Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_159

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 6103
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25


Found at i:824 original size:54 final size:54

Alignment explanation


    Indices: 760--874  Score: 146
    Period size: 54  Copynumber: 2.1  Consensus size: 54

        750 CTTTCCTGCT

                             *          **        *               
        760 TCAATGGCGCCTACAACGGCTGCCTTGCTTTCCTCATATAGCGCTGAGCTATTG
          1 TCAATGGCGCCTACAACAGCTGCCTTGCCGTCCTCATACAGCGCTGAGCTATTG

                        *         **           *     *   **   *   
        814 TCAATGGCGCCTGCAACAGCTGTTTTGCCGTCCTCGTACAGTGCTTTGCTCTTG
          1 TCAATGGCGCCTACAACAGCTGCCTTGCCGTCCTCATACAGCGCTGAGCTATTG

                   
        868 TCAATGG
          1 TCAATGG

        875 TCGTGTCAAT


Statistics
Matches: 49,  Mismatches: 12, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  54   49  1.00

ACGTcount: A:0.17, C:0.29, G:0.23, T:0.31


Consensus pattern (54 bp):   
TCAATGGCGCCTACAACAGCTGCCTTGCCGTCCTCATACAGCGCTGAGCTATTG

Found at i:883 original size:12 final size:12

Alignment explanation


    Indices: 866--891  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        856 GCTTTGCTCT

                        
        866 TGTCAATGGTCG
          1 TGTCAATGGTCG

                        
        878 TGTCAATGGTCG
          1 TGTCAATGGTCG

              
        890 TG
          1 TG

        892 GAGATCGTAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.15, C:0.15, G:0.35, T:0.35


Consensus pattern (12 bp):   
TGTCAATGGTCG
Done.