Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_163

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 6004
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26


Found at i:1142 original size:14 final size:14

Alignment explanation


    Indices: 1123--1152  Score: 53
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1113 GCGCGCCGTA

                          
       1123 AAATCGTATAGTCC
          1 AAATCGTATAGTCC

                     *    
       1137 AAATCGTATTGTCC
          1 AAATCGTATAGTCC

              
       1151 AA
          1 AA

       1153 TGTTGTCTTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30


Consensus pattern (14 bp):   
AAATCGTATAGTCC
Done.