Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_199

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 5219
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22


Found at i:4966 original size:15 final size:15

Alignment explanation


    Indices: 4942--4973  Score: 57
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       4932 GCTCGTTAAG

                           
       4942 TTTAAATCTTGAATT
          1 TTTAAATCTTGAATT

               *           
       4957 TTTGAATCTTGAATT
          1 TTTAAATCTTGAATT

              
       4972 TT
          1 TT

       4974 ATTCACTTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.28, C:0.06, G:0.09, T:0.56


Consensus pattern (15 bp):   
TTTAAATCTTGAATT
Done.