Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_208

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 5044
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28


Found at i:3594 original size:19 final size:19

Alignment explanation


    Indices: 3570--3620  Score: 65
    Period size: 20  Copynumber: 2.6  Consensus size: 19

       3560 TTCTGAAAGG

                               
       3570 ACTTAATTGTTTAGCTACA
          1 ACTTAATTGTTTAGCTACA

                        *  *   *
       3589 ACTTAATTGTATAAGTTACG
          1 ACTTAATTGT-TTAGCTACA

             *          
       3609 AGTTAATTGTTT
          1 ACTTAATTGTTT

       3621 CCCGATAAGA


Statistics
Matches: 26,  Mismatches: 5, Indels: 2
        0.79            0.15        0.06

Matches are distributed among these distances:
  19   11  0.42
  20   15  0.58

ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45


Consensus pattern (19 bp):   
ACTTAATTGTTTAGCTACA

Done.