Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_522

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1069

Length: 1782
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.20


Found at i:529 original size:15 final size:16

Alignment explanation


    Indices: 511--542  Score: 57
    Period size: 15  Copynumber: 2.1  Consensus size: 16

        501 CATCGGTATT

                            
        511 GCCGTCATCGCG-GCG
          1 GCCGTCATCGCGAGCG

                            
        526 GCCGTCATCGCGAGCG
          1 GCCGTCATCGCGAGCG

             
        542 G
          1 G

        543 TTGCGTCAGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   12  0.75
  16    4  0.25

ACGTcount: A:0.09, C:0.38, G:0.41, T:0.12


Consensus pattern (16 bp):   
GCCGTCATCGCGAGCG

Found at i:670 original size:21 final size:21

Alignment explanation


    Indices: 604--675  Score: 72
    Period size: 21  Copynumber: 3.4  Consensus size: 21

        594 GATAGCGATG

               *     * *   * *   
        604 CTGCAGCAGAATAAGGCGGCC
          1 CTGGAGCAGCAGAAGACAGCC

                  * *             
        625 CTGGAGGATCAGAAGA-AGACC
          1 CTGGAGCAGCAGAAGACAG-CC

                                *
        646 CTGGAGCAGCAGAAGACAGCA
          1 CTGGAGCAGCAGAAGACAGCC

                     
        667 CTGGAGCAG
          1 CTGGAGCAG

        676 GACAACGCCG


Statistics
Matches: 39,  Mismatches: 10, Indels: 4
        0.74            0.19        0.08

Matches are distributed among these distances:
  20    1  0.03
  21   36  0.92
  22    2  0.05

ACGTcount: A:0.33, C:0.24, G:0.35, T:0.08


Consensus pattern (21 bp):   
CTGGAGCAGCAGAAGACAGCC
Done.