Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: C6641
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 85913
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Found at i:3797 original size:21 final size:21
Alignment explanation
Indices: 3720--3797 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 21
3710 ACAGCACGCT
* *
3720 CCTGAGGAGCATCACGGAGT-A
1 CCTGAAGAGCACCAC-GAGTCA
*
3741 CCTGAAGAGCACAACGAAG-CA
1 CCTGAAGAGCACCACG-AGTCA
* *
3762 CCTGACGAGCCCCACGAGTCA
1 CCTGAAGAGCACCACGAGTCA
*
3783 CTTGAAGAGCACCAC
1 CCTGAAGAGCACCAC
3798 CAGGCTACTG
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
20 3 0.07
21 42 0.93
ACGTcount: A:0.32, C:0.32, G:0.26, T:0.10
Consensus pattern (21 bp):
CCTGAAGAGCACCACGAGTCA
Left flanking sequence: Indices 3220 -- 3719
GAGTGTTTACGTGGATGTTTGGGGGCTCCAAGGGTGCCAAGGAGGTTGTGGGAGACATGTCACAG
GCTGCGTCGGAGGCATTGGCCGAGGCTACGCCCTCGGTGGATTTGGTGACCGAAGCCTTGATGTC
CACTGTAGTGGCTGCCTCTGTGATAGCACTGTCGATGATGGATCTGAGCCAGATCGAGGAAGTGG
AAGAAGATCCAGCGACAATCGAGGTGGTGTGGCCTCTGGATGAGGCGCAAGAGCACGAGGAGAAC
CAGCCTATCGGTGAGCCTTCTGAGGTGCGCGAAGAGGAGATGGTTCATGAGGCCCCTGAAGAGGC
TCAAGCCACCCCGGCGGTGGAAGAAGCTTCTGATGACGCCCAGGCTGCGGATGGTGAGTATAATT
ATGCGGAAGAAGAGCTTGCTGAGCCCGTTGACGAGCCAGAAGCAACCCAGGATGTTCAGGCAGTT
GAGGCTGAGTATAAATCACATGAAGCACCTGAGCAACAGCACGCT
Right flanking sequence: Indices 3798 -- 4297
CAGGCTACTGAAGCCCACCATGATGCACCTGAAATGCACATCGACCACCAAGAAGCGGAAAACGA
TGCTGAGGGTATCCGGGAGGCCCAGGGTGCGGTTTCTTCGATTAACGAGGAGAATTCTTACAATG
ACGTTCACGAACCGGCCCCTGAGCAAATTCCCGAGCCCTCCGTTGAGCACGAAGCTCCCCCCGTC
GACCCACCACACGCTGAGCCTGAGGAAAAGCCGGTTGTGGATCAAGAAGCTCTACACGAAGCTGT
CGAGTCCTTGGAGCAGCAACAGGAGCACGGGGAAGCGCAACAAACAGCTCACGAGCAGCCCCAAG
ATGCCCCTCACGATGAGCTTTAGTACGGTTTCAAGTTCAATCGACTACATAATGGACATTATTCA
ATGTAAAGTATTACCGTCATTACGCATGTAAGTTCCTGATATCTGTCATTTCATTATTCCCATTA
ATCTATTCAGCGCTTTAAGGTCTCTCGACATCCACGAGCTTACCC
Found at i:16574 original size:27 final size:27
Alignment explanation
Indices: 16555--16663 Score: 139
Period size: 27 Copynumber: 4.0 Consensus size: 27
16545 CCTACGGGTC
16555 CAGTTCGGGGCCCACCCCCTACGGCAG
1 CAGTTCGGGGCCCACCCCCTACGGCAG
* * * *
16582 CAGCTCGGGCCCCACCCCATACGGAAG
1 CAGTTCGGGGCCCACCCCCTACGGCAG
* *
16609 CAGTTC-CGGCCCTACCCCTTACGGCAG
1 CAGTTCGGGGCCC-ACCCCCTACGGCAG
*
16636 CAGTTCCGGGCCCACCCCCTACGGCAG
1 CAGTTCGGGGCCCACCCCCTACGGCAG
16663 C
1 C
16664 GGGTACCCCG
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.06
27 60 0.87
28 5 0.07
ACGTcount: A:0.17, C:0.46, G:0.26, T:0.12
Consensus pattern (27 bp):
CAGTTCGGGGCCCACCCCCTACGGCAG
Left flanking sequence: Indices 16055 -- 16554
CCGGTCAACCTAAAGACAACACACATACCCCCTCCCCACCCAATTGACACCCTACACACCACCCC
ACAGACCCCCTTCATCAGTCCATCCACCCATCCCACCATCCTCGTCCTTCCTCCACCCAGCCGCA
CGCGCGAAAATCAACACGACTACCACCCGCAAAATTCACCGGGATCACCCACCACCACCACACCC
ATGAGATCCCTGCGGAGCCAGCGCTCGTTTGGCGCCTCCACCAATGGCTCCAGTACCCAAAACCC
GCCCGCAGACAACCCCTACGCGGCACCGTCGCAGTACGGCACCGGTTCGCGCGCCGGCGGGCGCA
GCCACGGGACATATTCCCGAGACGGGACCCCCAACTCGCGCGAGTCGCCCCGCGAGCCCGACGAC
GATCCCCGCGCGCGTACCAGCTACGGGCGCGCTGGATCAGGCCCCAACCCCTACGGGAGCACCTC
GGGCCCCTCGTCGTATGGCAGTTCCGGACCGTCTCCCTACGGGTC
Right flanking sequence: Indices 16664 -- 17163
GGGTACCCCGCCCGCGACAGTGGCGCCACCCACCGCTCGCGCATCAGCAACCGGCTGCACGAGAG
CTACCTGAGCTTGTCGCGCCCGGGCTCGCGTGGCGTCAGTGCCAGCAACCCCTACGGGTCGCCCG
TGCTTGGGCGCAACAGCCCCAACTTGCGTGGGCGAGGCTCCGACAACGGGCGGTTTGAGTCTTAC
CGCGCCGAGCGCGACGGGTCACGCCACGCATCCGACGCGTACGAGCCCGATCCCTACGACCTAAA
CGAGCCCGAACCAGACGCGTACGGGTCACGCCACGCATCGCGCGACGCGTCCCGCCTCGACTCGC
GGGTGCTGTCGCTGGCCACCACCAACTACACCCCCAGGGGCCGGGCCACGCTGCGGTACACGGGC
CAGGGCGAGCCCATGGACGATCTCAAGGAGATCTTCAACAACCTCAAGTACGACTGGCCGCTGAT
GCTCGACGATCTGGCCAACCCCATCGAGATGGCAGTGGCGCTCTT
Found at i:20324 original size:15 final size:14
Alignment explanation
Indices: 20294--20377 Score: 105
Period size: 15 Copynumber: 5.6 Consensus size: 14
20284 GCATAGCTAT
20294 GAAGTGAGAGACTA
1 GAAGTGAGAGACTA
20308 GAAGTGAGAGTACTA
1 GAAGTGAGAG-ACTA
20323 GAAGTGAGAGTACTA
1 GAAGTGAGAG-ACTA
*
20338 GAAGGGAGGAGAGGACTA
1 GAA--G-TGAGA-GACTA
20356 GAAGTGAGAGACTA
1 GAAGTGAGAGACTA
20370 GAAGTGAG
1 GAAGTGAG
20378 GACAGACTGG
Statistics
Matches: 63, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
14 23 0.37
15 26 0.41
16 1 0.02
17 1 0.02
18 11 0.17
19 1 0.02
ACGTcount: A:0.40, C:0.06, G:0.39, T:0.14
Consensus pattern (14 bp):
GAAGTGAGAGACTA
Left flanking sequence: Indices 19794 -- 20293
TGCTGGAGCCGGCGGACGCGGACCGGTTTGTGCTGGTGCTCAACAAGGACATCTACACGTTGAAC
AACAAGCTCGCGGTGCGGTTGTCGGACCGCCACCGCCTCAACGTGTACGGTGGGTTGGACACTTT
TCTCAACCGGGTGCTCATCCAGGGGTCGTTTGTGGTGCTGAAGATCCTGGCGTTTGGCGTGAAGC
GGGTGATGCTCAACATCTACATTCTCCAGCAGATGTTGCGCAACTTGGCGGGCGGCGACGGTGCC
GACTTCACGTTGCTGGTGGCATACTACGACTTGTTCTCGCTCAACGAGCACAGCTTTATCCAGGA
GGTGAGAGAAAACCCTCACAAGTTCTCCAAGCCCGAGTTCATGAACATGGCCCGGTTGGTGTACT
CGGAGAAGCTTGCTGACGGCGGCGGGTCGTCGTTTGCCAAGTCCAAGTACGCGGACTTGAGAAAG
AAGATTGAAAACGAGTATCAGGAGTAATTAGAAATGCATAGCTAT
Right flanking sequence: Indices 20378 -- 20877
GACAGACTGGAATGGGTGACTGCCTCCGACTAATTTTGTGTTATCAGGGCTGATTCTGCTTAGGT
TATCAGAACTTATCTGGATCATGGGTACTGATAAGATAAGGACGACTATATATATGGGGTAGGCC
TGGTGTTTTTCGTAACAAGCCACCGCAAACTGTGAGCGATCCCGAGCGGGCCAGCATTTCACTCC
CACCCAAAGCACAAGCTCACTCTCCGCTACGATGACCCCACCCGTGACCCTGCAATGCCATGTCA
CCCCAGACCGCTATTGATGCACCGAATGCTAAAGTTTTTCCGGCGCAGGGTCTTTCCAAAAACGG
CAGTGGCTGCAAATTACGCAAATCAAAAATCTATCATATTAACATCTATAAAAGCAAATCGTTGG
ATCATTACTAAAACCAGTTTAGAAAACCTCACCCTGGTCGAACATAGCGTCGGCCACCTTGATGA
AACCAGCAATGTTAGCACCCTTCAACAACGAAGGCAAGCCCTCGG
Found at i:28379 original size:19 final size:19
Alignment explanation
Indices: 28355--28401 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
28345 ATCATAGCGT
*
28355 CACCACACCCAACCACCTC
1 CACCACAACCAACCACCTC
**
28374 CACCACAACCAACCTTCTC
1 CACCACAACCAACCACCTC
28393 CACCACAAC
1 CACCACAAC
28402 TTTACCAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.34, C:0.57, G:0.00, T:0.09
Consensus pattern (19 bp):
CACCACAACCAACCACCTC
Left flanking sequence: Indices 27855 -- 28354
CAGCTTCCGGTGGGGCTGTCTTCCGCTGGCAATATTACTAGCTCACTGGAAGAGAGCTTCGGGTC
CGCGAGTCCAGCGTCCGTTTCGAATGTAGACAGCGTTTCGATTTCGTTATCGCCCAGCTACACTT
CTTACGTTGGCTTGATTGACTCCGTTGAGTCCAAATCCGCAGGTGATTTCATCCAATCCGCTGTC
GACTCCCACACGGTGTCACCAGTCGTGGCTGCAAATTCTTCGCACAGTGGAACCACCCACCCTGC
CACCCAATCTATTTTCGACCATGGCGCCCAATCTGATGCGCCAATTCCTACCGTGATCGAAGTCC
CGACCGGCGGTTCTGTTATTCGTTTTCTCAGCCACAAAATGTTGGCTTTCGCTTTCGTTTCTCTC
ATGCTTCAATTGTAATTTCGATTCTGAAAAACACCTTCAATAAATGTTTCGCCTATTCAAAAGCA
GCCACACACCTAGGTCACTCTTCCAAGCAAAACCCATCATAGCGT
Right flanking sequence: Indices 28402 -- 28901
TTTACCAACCCGCTTTCAGACACCGCCGCACACGCGCGGCTCCTCCACGCCGCGCGATCGTTGCA
CTCTCATCTCAGCAACAAATTGGGCCTATCTCGCTAGTTACCACCACACTCCCCATGGACAACCG
GCGGGTGCTTTCCCAAAACAAAGGGCACAGCCAGCGCGGCGGTCTCTTTTCGCTGGTGAAGCGGA
TATTTTCCCGGGGAAATTCCCCCGAACCGTCGGGCCACGAGCCCTCCAACCCCACGCAGAGAACC
ACCCTGGCACCGGTAAAACCGCTTCCGTCGTTCTTACAGTTTTCCCATACCCAGAACAAGCCCGC
TCCGGAGCGCAAGTTGCTGATTCCCGGTACTTTTGAGGAGACCCCCAAAAAACGACGAGCTGAGG
ACCTCCTTGTGGCCCAGCAGGCACCTAAGCGGGTACACCGGGTTTCTCTGGCGAACGATCTCGGC
ACTCCGCGCCAACGAATCCTTTCCCGTCGCCCCCTGCGCGTGCTG
Found at i:29552 original size:12 final size:11
Alignment explanation
Indices: 29533--29582 Score: 54
Period size: 9 Copynumber: 4.7 Consensus size: 11
29523 TTTGGTTCGA
29533 AACCGGAAACC
1 AACCGGAAACC
29544 AAGCCGGAAACC
1 AA-CCGGAAACC
29556 AA--GGAAACC
1 AACCGGAAACC
29565 AA--GGAAACC
1 AACCGGAAACC
29574 AAGCCGGAA
1 AA-CCGGAA
29583 CCCCCGAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
9 18 0.51
11 2 0.06
12 15 0.43
ACGTcount: A:0.48, C:0.28, G:0.24, T:0.00
Consensus pattern (11 bp):
AACCGGAAACC
Left flanking sequence: Indices 29033 -- 29532
GCACCGGAGCCTGCAAGAACGGCAATTGACCCGGCAGAACGGGCTGGGCCAGGTTTCGGGACAAA
CCCTGGCCAACACCACGTTCGATGGGTTTGGCAACACGCTGGTGATGCTCAACACGAGTCATTTG
GCCGCCACACGCGGTCCCAAGCTGAAAACCTACCAAGCTCTTGAAGCGGTGTTGAAAAACCAGGA
GGAGAACGGCCACAAGCCCGCTGACGGCGCCGCTGCAAAGCTGGCGCAGTTCGGGAACCCCTACG
CGGCCTCGGGCGGCGCCAAACGCAAGGTGACAGCCCAGGACATCACCAAAACGTTGGCGTACGAC
AAGTCCACCCCGTTGCCTGCATCCAGCATGGAGGTGGACACCCCGGAGACGAGCACCCCGGCGAA
GCCCAAGGACTCCCAGGAGAAGTCGGAGCCGGTTTCGCAGCCGAAATCGTTTACGTTTGGCAAGT
CGGACGAGACCAAGGCCAACGGGCCCGGGTTCAGCTTTGGTTCGA
Right flanking sequence: Indices 29583 -- 30082
CCCCCGAAATTCAACCTCTTTGGCAACTCCCAGACCGCTAAGGAGATTAAGCAGCCCACCGCGGC
GCCCACGTTTGGGTTGAACGGGCCCAAGAAGTGCACTGAGAGCGCAAACCAACTTAAGCCAGTGG
AGAAGAAGGGGTTCGAGTTCAAGTCAGCCAAAGCCGAGTCGAAGAGTGCGCCCAAGCCCGAGTCT
GAGCCCAAGCCTGCTGCTTTCAAAAGTGCTGAGCCCAAGACTGACTCCCAACCGGCTCTCTTTGG
GGCCAACGGCACCGCGCCGGCCCTGTTGCCTGCGAAGCCCGTGGCCCAGCCTGCCCAACCATCGC
CACAGTACCTGTTTGGCTCGATAACGGTGCGTCCGGCGCAGTATTCTGACGCCGAGGTGGCCCGT
GAAAAGCATTTGTTTGTATTTTAGTGTAAAGTAGATCAAGCGTTGATTAGAAAGATGTAAGATGA
TATTTGGTGGATCAAGAAAGTAGAGACGGAAAGGGTTAGACTGCT
Found at i:29563 original size:9 final size:9
Alignment explanation
Indices: 29549--29576 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
29539 AAACCAAGCC
29549 GGAAACCAA
1 GGAAACCAA
29558 GGAAACCAA
1 GGAAACCAA
29567 GGAAACCAA
1 GGAAACCAA
29576 G
1 G
29577 CCGGAACCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.21, G:0.25, T:0.00
Consensus pattern (9 bp):
GGAAACCAA
Left flanking sequence: Indices 29049 -- 29548
GAACGGCAATTGACCCGGCAGAACGGGCTGGGCCAGGTTTCGGGACAAACCCTGGCCAACACCAC
GTTCGATGGGTTTGGCAACACGCTGGTGATGCTCAACACGAGTCATTTGGCCGCCACACGCGGTC
CCAAGCTGAAAACCTACCAAGCTCTTGAAGCGGTGTTGAAAAACCAGGAGGAGAACGGCCACAAG
CCCGCTGACGGCGCCGCTGCAAAGCTGGCGCAGTTCGGGAACCCCTACGCGGCCTCGGGCGGCGC
CAAACGCAAGGTGACAGCCCAGGACATCACCAAAACGTTGGCGTACGACAAGTCCACCCCGTTGC
CTGCATCCAGCATGGAGGTGGACACCCCGGAGACGAGCACCCCGGCGAAGCCCAAGGACTCCCAG
GAGAAGTCGGAGCCGGTTTCGCAGCCGAAATCGTTTACGTTTGGCAAGTCGGACGAGACCAAGGC
CAACGGGCCCGGGTTCAGCTTTGGTTCGAAACCGGAAACCAAGCC
Right flanking sequence: Indices 29577 -- 30076
CCGGAACCCCCGAAATTCAACCTCTTTGGCAACTCCCAGACCGCTAAGGAGATTAAGCAGCCCAC
CGCGGCGCCCACGTTTGGGTTGAACGGGCCCAAGAAGTGCACTGAGAGCGCAAACCAACTTAAGC
CAGTGGAGAAGAAGGGGTTCGAGTTCAAGTCAGCCAAAGCCGAGTCGAAGAGTGCGCCCAAGCCC
GAGTCTGAGCCCAAGCCTGCTGCTTTCAAAAGTGCTGAGCCCAAGACTGACTCCCAACCGGCTCT
CTTTGGGGCCAACGGCACCGCGCCGGCCCTGTTGCCTGCGAAGCCCGTGGCCCAGCCTGCCCAAC
CATCGCCACAGTACCTGTTTGGCTCGATAACGGTGCGTCCGGCGCAGTATTCTGACGCCGAGGTG
GCCCGTGAAAAGCATTTGTTTGTATTTTAGTGTAAAGTAGATCAAGCGTTGATTAGAAAGATGTA
AGATGATATTTGGTGGATCAAGAAAGTAGAGACGGAAAGGGTTAG
Found at i:31616 original size:16 final size:16
Alignment explanation
Indices: 31595--31629 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
31585 TGTAGATTCG
31595 TGATGTAGAGTCGCTT
1 TGATGTAGAGTCGCTT
*
31611 TGATGTAGAGTCGTTT
1 TGATGTAGAGTCGCTT
31627 TGA
1 TGA
31630 AGAAGGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.20, C:0.09, G:0.31, T:0.40
Consensus pattern (16 bp):
TGATGTAGAGTCGCTT
Left flanking sequence: Indices 31095 -- 31594
CAACTTGTTTGACTGGACCTACGTCGGGAACGTGGCTGACGCGCACGTGTTGGCTACCCAGAAGC
TTTTGGGCGGGTCGGATGACGAGATCAAGGCCATTGCTGGCGAGACGTTTTTCATCACCAACGAC
GCCCCCACCTACTTCTGGACGCTTGCGCGTACGGTGTGGAAGCAGGACGGGATCGTTGACAAGAG
CTACGTCAAGTTGGCGCGCCCGGTGGCCATCTGCTTGGGCTACGTGTCGGAGTTTGTCCTGAACA
TGCTCGGGAAGGAGCCCGGCATTACTCCTTTCAGAGTGAAGGTGGTTTGTGCCAACCGGTACCAC
GACATTACGAAGGCGAAGACGTTGTTGGGGTACACCCCCGCGGTGGACTTGGAACAGGGGATCAA
GTACACGTTGGACTGGATGAACGAGACTAATTAGTAATAGATCGAATTGACACGGAAAGGATGGG
TTTAGGTAGGTTGTTTTGACGTAGTGGTGTGTTGATGTAGATTCG
Right flanking sequence: Indices 31630 -- 32129
AGAAGGGTTTGATACAGTGGGGTGGATCCACATGCAGCAAGTTACTTGGTGTCTCAAGGTTCCAG
TTTTGGGACTTGTTTTGCAACCAAGTAAAATATGACGGATTCAGAACAGAAACCGAGCTAGTTGT
GTAGAAAATAACCTTGCAAGATGGAAACTATCTCTACTTCTAAAATAGCTTCCTTTTTACGCGTC
TCAACACGCGTCGGTCTAGGCCTCTTTTGATACCTCTGGGACAGATCGTCACGCCACGCACACAA
CATCCACCACCCTTGAAAATGCTATAAAAAAAGATCAATTGTCTTCTCCATTTCTCATGGACTCG
CTCATTTACTCTCCTCTGGACGCCGTGGCCCGCATGTACGTGCTTGGCACTTTTGGCCTCAAGTC
GACCGCCAAGGGAACCGGAGCCCGTACCCGTCGTCGGGAAGCCATGGCTACCGATGTGCCGGTTG
TGTGCACCGAGGCAGCCAGCTTAATAACTCTGGGGACCGTTGGGA
Found at i:35323 original size:12 final size:12
Alignment explanation
Indices: 35306--35378 Score: 123
Period size: 12 Copynumber: 6.2 Consensus size: 12
35296 GGCAGATCTT
35306 AGAGCGTAGATG
1 AGAGCGTAGATG
35318 AGAGCGTAG--G
1 AGAGCGTAGATG
*
35328 AGAGTGTAGATG
1 AGAGCGTAGATG
35340 AGAGCGTAGATG
1 AGAGCGTAGATG
35352 AGAGCGTAGATG
1 AGAGCGTAGATG
35364 AGAGCGTAGATG
1 AGAGCGTAGATG
35376 AGA
1 AGA
35379 AGCAGTGAAC
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
10 9 0.16
12 48 0.84
ACGTcount: A:0.34, C:0.07, G:0.42, T:0.16
Consensus pattern (12 bp):
AGAGCGTAGATG
Left flanking sequence: Indices 34806 -- 35305
AGAGCTCGGCGTTGTAGCCCTCGGCCTTGGCGCGCTCGGCCACCAAGCCAAAGTGGAGCACGTCG
CCCGTGTAGTTTTTGACCACGAGCACCACCCCGTGCTCCTTGGTGGCCACCGACTTAATGGCGGC
CATGATCTGGCGGGTGGCGGGCAGGGCAAAGATCAGGCCCAGCACGGCGGCGTCCAAGAGGTTCG
AGCCCACGTAGCCCCCGTGGAGCGGCTCGTGGCCCGCTCCGCCACCGGAGATGATCGCCACCTTG
TCTGCCAGGGGCTTGCGGAACACCACCTTTTCCAGCTCGATCAACGAGAGCAGCGGGTTGGCGCG
GACGAGGCCTTGGAGATTGGCCACCACGAGGTCCTTGTCGGCGTAGTTCCAGTGCTTTGAGAGGG
TCATGATTGCAATTGGGTGAGAAACGGGAGATTTCACCTGGTTTTACGTTGGCGTGGGTCTACGT
AATCGTGCGGTGGGGGGGCATGCAGGCCGGTGGGGGGCAGATCTT
Right flanking sequence: Indices 35379 -- 35878
AGCAGTGAACGGTGGTTAGTGTGTGAGCGTGGGCTAGAAGGTTCTACAAACAATTGCTACAATTG
CGGCCGGTCGTGACCACCGGGATTAGTTCCCGAGTCTCCTCGATCCGTATGCATGCTCCTAACCG
ATCAGACCACCACTGTGGTTAACATGCCATCGGGCACGGATGCGAAATCGAGGGGGGATTCTCGA
GACCCATATTGCCGGGGTGTCTGTCGACGGGTCACTCCCGACCGCATTGTTCTAATCGCCGAACT
CGCTCCTTGGCTTCCTAGTTAGGGCTACGAGCTTTGGGCTGCGAGCGTAGTGGGGGTATTCATTG
GTGGGGGTCACCCCACGGGGATTGTAGGCCACAAGCCCAGAGGCAAGCCCACAAGCCCAGAGGCA
GGCCCACAAACCCAGAGGCAAGCCACAAACCGTAGCCCTCGACACAAACCACAATCCCCCGCGTT
GATGCCCATTCCTGATTTTAACTTACGTCACCAAATAAACTCTTA
Found at i:35349 original size:34 final size:35
Alignment explanation
Indices: 35306--35378 Score: 121
Period size: 34 Copynumber: 2.1 Consensus size: 35
35296 GGCAGATCTT
*
35306 AGAGCGTAGATGAGAGCGTAG-GAGAGTGTAGATG
1 AGAGCGTAGATGAGAGCGTAGAGAGAGCGTAGATG
35340 AGAGCGTAGATGAGAGCGTAGATGAGAGCGTAGATG
1 AGAGCGTAGATGAGAGCGTAGA-GAGAGCGTAGATG
35376 AGA
1 AGA
35379 AGCAGTGAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 21 0.58
36 15 0.42
ACGTcount: A:0.34, C:0.07, G:0.42, T:0.16
Consensus pattern (35 bp):
AGAGCGTAGATGAGAGCGTAGAGAGAGCGTAGATG
Left flanking sequence: Indices 34806 -- 35305
AGAGCTCGGCGTTGTAGCCCTCGGCCTTGGCGCGCTCGGCCACCAAGCCAAAGTGGAGCACGTCG
CCCGTGTAGTTTTTGACCACGAGCACCACCCCGTGCTCCTTGGTGGCCACCGACTTAATGGCGGC
CATGATCTGGCGGGTGGCGGGCAGGGCAAAGATCAGGCCCAGCACGGCGGCGTCCAAGAGGTTCG
AGCCCACGTAGCCCCCGTGGAGCGGCTCGTGGCCCGCTCCGCCACCGGAGATGATCGCCACCTTG
TCTGCCAGGGGCTTGCGGAACACCACCTTTTCCAGCTCGATCAACGAGAGCAGCGGGTTGGCGCG
GACGAGGCCTTGGAGATTGGCCACCACGAGGTCCTTGTCGGCGTAGTTCCAGTGCTTTGAGAGGG
TCATGATTGCAATTGGGTGAGAAACGGGAGATTTCACCTGGTTTTACGTTGGCGTGGGTCTACGT
AATCGTGCGGTGGGGGGGCATGCAGGCCGGTGGGGGGCAGATCTT
Right flanking sequence: Indices 35379 -- 35878
AGCAGTGAACGGTGGTTAGTGTGTGAGCGTGGGCTAGAAGGTTCTACAAACAATTGCTACAATTG
CGGCCGGTCGTGACCACCGGGATTAGTTCCCGAGTCTCCTCGATCCGTATGCATGCTCCTAACCG
ATCAGACCACCACTGTGGTTAACATGCCATCGGGCACGGATGCGAAATCGAGGGGGGATTCTCGA
GACCCATATTGCCGGGGTGTCTGTCGACGGGTCACTCCCGACCGCATTGTTCTAATCGCCGAACT
CGCTCCTTGGCTTCCTAGTTAGGGCTACGAGCTTTGGGCTGCGAGCGTAGTGGGGGTATTCATTG
GTGGGGGTCACCCCACGGGGATTGTAGGCCACAAGCCCAGAGGCAAGCCCACAAGCCCAGAGGCA
GGCCCACAAACCCAGAGGCAAGCCACAAACCGTAGCCCTCGACACAAACCACAATCCCCCGCGTT
GATGCCCATTCCTGATTTTAACTTACGTCACCAAATAAACTCTTA
Found at i:35757 original size:20 final size:20
Alignment explanation
Indices: 35732--35796 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
35722 GGATTGTAGG
35732 CCACAAGCCCAGAGGCAAGC
1 CCACAAGCCCAGAGGCAAGC
*
35752 CCACAAGCCCAGAGGCAGGC
1 CCACAAGCCCAGAGGCAAGC
*
35772 CCACAAACCCAGAGGCAAG-
1 CCACAAGCCCAGAGGCAAGC
35791 CCACAA
1 CCACAA
35797 ACCGTAGCCC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 6 0.14
20 36 0.86
ACGTcount: A:0.37, C:0.40, G:0.23, T:0.00
Consensus pattern (20 bp):
CCACAAGCCCAGAGGCAAGC
Left flanking sequence: Indices 35232 -- 35731
CCTGGTTTTACGTTGGCGTGGGTCTACGTAATCGTGCGGTGGGGGGGCATGCAGGCCGGTGGGGG
GCAGATCTTAGAGCGTAGATGAGAGCGTAGGAGAGTGTAGATGAGAGCGTAGATGAGAGCGTAGA
TGAGAGCGTAGATGAGAAGCAGTGAACGGTGGTTAGTGTGTGAGCGTGGGCTAGAAGGTTCTACA
AACAATTGCTACAATTGCGGCCGGTCGTGACCACCGGGATTAGTTCCCGAGTCTCCTCGATCCGT
ATGCATGCTCCTAACCGATCAGACCACCACTGTGGTTAACATGCCATCGGGCACGGATGCGAAAT
CGAGGGGGGATTCTCGAGACCCATATTGCCGGGGTGTCTGTCGACGGGTCACTCCCGACCGCATT
GTTCTAATCGCCGAACTCGCTCCTTGGCTTCCTAGTTAGGGCTACGAGCTTTGGGCTGCGAGCGT
AGTGGGGGTATTCATTGGTGGGGGTCACCCCACGGGGATTGTAGG
Right flanking sequence: Indices 35797 -- 36296
ACCGTAGCCCTCGACACAAACCACAATCCCCCGCGTTGATGCCCATTCCTGATTTTAACTTACGT
CACCAAATAAACTCTTATTGTTTACTGTCTCATTTCGCACTCATGAAGTTGGTGGTGACAACGGG
GGCCACCGTCACGTTCAAGAGCCTCCTCGCCAAGGTGCTCGCGCCCCAGTTCCTCGCCGAGCTCG
CCGAGCTCGGATTCTCCGACATCGTCGTCCAGTACGGGCGCGAGCTCCGCGACGGCACCGACGTC
AGCGCCCGGTTCGTCGAGCAGTTGGGAATCCCCGATCACGTGACCGCGATCGGGCTAACCAATGA
CGTTGACGCTTTGCTTGCTCACGCTGACGTCGTTGTGAGCCACGCCGGAACCGGGGCCATTCTCG
ACGCGCTCCGGCGCGGGCTCCGGCTCGTGGTGGTGCCCAACGAGGACCTCATGGGCAACCACCAG
ACCGAGATAGCCACCCAGTTCGCCGGGTTGGGGGTGTGCAAGGCT
Found at i:38293 original size:30 final size:30
Alignment explanation
Indices: 38209--38293 Score: 125
Period size: 30 Copynumber: 2.8 Consensus size: 30
38199 CGAGCATGCG
* **
38209 CACCAGCTCGGCCAGTCGCACCTGATGGAC
1 CACCAGCTCGGCCAGGCGCACCTGGCGGAC
* *
38239 CACCAGCTTGGCCAAGCGCACCTGGCGGAC
1 CACCAGCTCGGCCAGGCGCACCTGGCGGAC
38269 CACCAGCTCGGCCAGGCGCACCTGG
1 CACCAGCTCGGCCAGGCGCACCTGG
38294 ACCACCTCCT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.19, C:0.41, G:0.29, T:0.11
Consensus pattern (30 bp):
CACCAGCTCGGCCAGGCGCACCTGGCGGAC
Left flanking sequence: Indices 37709 -- 38208
TGCCCGGGGACGACTCGCCGTTCCTGCCGCACAAGCAGTTGCCACTGCCCATGCCCACGCTGCTG
CTGCAAAACACCCCGCCGTGGACGGGCTCGGGCATGCTCCCGCGGCTGCCGCCCAAAAAGGAGCT
GAAGCTGCCCCAGGGGCTGGCCAAGCTGACGCCCAACGCGATTCTGGGCCGCCACATGGACCGGT
TGCAGGGCCACGGGCGCCACGCGTCGTTTTCCGCGGCGCTGGGCTCGGGCTATGCCCAGCCACAC
GACCCTCCGGCCGAGGACAAGACCCTCCTTCTCCTGGGGCTCGAGATGGACCTTGGCACGTTTGA
CTGGCACCAGGACCCGCCGCAGCTGTTCAAGAACCTCTTGCAGTACTTTGTCGAGAACACCACCA
ACTTTGCCAACCCGAGCCATCCCCACCACTTGCCCGGGTCCACGCCCGAGGTGTTCCCGCTGCCT
CGCCCGCGCCAGCTGCTGATCACGCTTGGCCAGCTCGAGCATGCG
Right flanking sequence: Indices 38294 -- 38793
ACCACCTCCTGGACCACCCGCTCGAGCCGCCCGCAAAGAAGCCGCGCATGGACTTCCAGTTCGAC
GACGACGACGACGACTGGCTCCACGAGCTCATCCTGGTGCCCACGGAGCCGGTGCCCGAGTTCTC
CGAGGCGATGGAGCCCACGCTGCTGGGGTCGCTGCCGCTCCTGCTGTTGTTCCGCACCCGCCAGC
ACGACTTGCGGGCCACCGCCACCCCCGCGACCCCGCACCCGTTCATCACCGTCGAGCTCCGCAAC
CGCATCTTGTTGCTGTTGCTGCGGCTGGACCTGCTGTTCCCCACGGTGGACGAGCTCAACCACTA
CATGGGGATGTACGAGCTGGAGTTCAACAAGTACTTCCCGTTCATCCACTTGCCGCTGCTCAAGA
ACCCGCGGGTCAACAACGTGGAGAACATCCCGTTGCTCTTGCTGATGTGTCTGATTGGCGCCCTC
TACTCGTTTGCCGAGCAGCACACCCAGTTGCTCTTCAACTTGTCC
Found at i:40644 original size:10 final size:10
Alignment explanation
Indices: 40621--40669 Score: 80
Period size: 10 Copynumber: 4.8 Consensus size: 10
40611 GCGTCTACCG
40621 TCACATTCCAC
1 TCACATT-CAC
40632 TCACATTCAC
1 TCACATTCAC
40642 TCACATTCAC
1 TCACATTCAC
40652 TCACATTCAC
1 TCACATTCAC
*
40662 TTACATTC
1 TCACATTC
40670 CTTTCCTTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
10 30 0.81
11 7 0.19
ACGTcount: A:0.29, C:0.39, G:0.00, T:0.33
Consensus pattern (10 bp):
TCACATTCAC
Left flanking sequence: Indices 40121 -- 40620
CCGACGCCGACCAGTTGTCCACCGAGATCAGCCAAGAGGTGAAGCTGGTGCAGTTGCTGGTGAAG
CTGTTGTACTTGGGCATCCGCATTTTGGCCGATGCTCCGGTGTGGCCAGTGGCGTTGGGGTTCAG
CGAGGCAATGAAGAAGCGCGCAAACAAACTTAAGGGCCCCAACAACTAATGACTATTTATTCTAT
TTATTATTATTTATTTATTGAAGGTTTTGCCAGAGGTGAAGGGGGGTGGAGGTAGTGGGAAGGGG
TGTGAAGTTTGGTGAGGGCTGTGAGAATGTGAAGTTTGTGGTGGAGGATAGTGTGAAGAGGTCGT
AGTGGTTTAGACATTCGAAGTGGGGCACGCGCGGGGTACGTGTATCAAAACGAATCAATGAATCA
CAGGATACGGCGCATTCCGACAGTAATTTCCTCATGTTTCATCGTCAGTCCACAGGATTTGTCAC
GTTGGGCCACCAGTTACCTGTCACGAGCGTCACTAGCGTCTACCG
Right flanking sequence: Indices 40670 -- 41169
CTTTCCTTTCCTTTCACATTCTTGTCACACATCCTCGTCCTCTCGTTCCTTTGCCGCCAAAAGAA
ACGACCACCCCAACCCACCTATCTCGACCACCGCCCACCCTACGCTAGCGCCGTGCTCCGATCGC
CATTGTCGGATCACCGCCCAAAGTTGCTCACTCGAGCAACCACAACGGTGACGACACGGCCGTGT
GCAGGTGGTGTACGCGGGGCACCCGCGGGGCATTGCGATCTTGGCGGAACATAAGGCCAGAACCA
ACGACAACGAGACGACGGCCCACCGTTTCGTCGCTCTTCTGTTCCCTCGCGTACCTGATCTCCCC
CCGAAGCTCGCCAATGCAGCTAAAATTAGATCGCCCGAGCGTGCCCGAGCCAGCAACCGGTGCTC
CTACTCGTCAGCCATGCGTCTGAAACACGGAACCCACTGCGCGTTCGCAACCGTGGCGAGCCAAA
CGTAAGCACTCTGAGCCAACTGTTTTGCAGTCGTCCCGACCGATC
Found at i:44190 original size:8 final size:8
Alignment explanation
Indices: 44179--44209 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
44169 GAAGAGTGTA
44179 GAAGTGGG
1 GAAGTGGG
44187 GAAGTGGG
1 GAAGTGGG
44195 GAAGTGGG
1 GAAGTGGG
*
44203 GAGGTGG
1 GAAGTGG
44210 TTCGTTGGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.65, T:0.13
Consensus pattern (8 bp):
GAAGTGGG
Left flanking sequence: Indices 43679 -- 44178
AGGACCTGACGTTCCACCGCGCGCTGAGTCTGGTGGACATGGAGACGTTGAACCGGGCCCCCGTG
GTGCGCACCGAGTATCCGGGCGTGTACTCGCAACAGGCTCCCGACGGTAAGTTCTACTTTGTGGA
CGACGACGAGACCCCGCCTACTCCCCCTGCGCACAACAATGGGTATGAAGGCAACAATGGGTACA
ATGCTGGCAATGGCACTGGCTACGGGGCCGACAATGGCTACGCTGGTGGCGACTACAACGCCAAC
CCGTACGACGATGCCAATGGGTACGACGCGGGGTACAACCAGGGTAACCAGTACCAGCTGGACGA
GTTCCGTCCTGGCCACCTGCGCCAGCCGCTGGGCCGCAGTGTTTACGAGGACTACCCGCGCCGGC
AAGCCTACCAATCTCACCACTAGGGCTGGCCCTTGGAGGCGTGGCCACGTTATAGAGACGGTGAG
TGTATGAATAGAGTGTAGTAATAATGTAATGATATGAAGAGTGTA
Right flanking sequence: Indices 44210 -- 44709
TTCGTTGGGAGGTGGTTTTGTTAGGAGGTGGGTTCCTTTGTGAAGTGGATTTCTTTGTGAAGTGG
ATTCATTCAAATGGATATCTTGGGAAGTAGCTTCATTCGTGCAGTGAGTACCTTGCGAACTGGGT
TCATTCGCGAACTGAGTTCTTCTAATATTCCATGAGCTTGTTGGAGCCTACTTCTATTGCTTAAC
CACATGGTTACTCTAAGCGAGGAATTGAAACTGGTTCGGTGATTGGTTGATCTGGAACTCGTTAA
TCAGTTCGTAACCTATTCGTGGTTCTCTTCTGAATCCACCCTTATGGATACTTCTTCCCCACCTC
TGCACAGATCCCCTGGCTGTCCCACTTGGCAACCACCTAGAACAGCCCGTCTGTTCCACCCACTA
CCCTATTGTCCCACTGGTCACATTCCCTGCATCAGCCGTGGCGAAGGCAAGAAGCAACCGGGCTA
TTTTTGGAACGGGACCCGGCAGCAACACAAAAAAAGAGGCCTCCA
Found at i:44221 original size:15 final size:16
Alignment explanation
Indices: 44201--44240 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
44191 TGGGGAAGTG
44201 GGGAGGTGG-TTCGTT
1 GGGAGGTGGTTTCGTT
*
44216 GGGAGGTGGTTTTGTT
1 GGGAGGTGGTTTCGTT
*
44232 AGGAGGTGG
1 GGGAGGTGG
44241 GTTCCTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.10, C:0.03, G:0.55, T:0.33
Consensus pattern (16 bp):
GGGAGGTGGTTTCGTT
Left flanking sequence: Indices 43701 -- 44200
GCTGAGTCTGGTGGACATGGAGACGTTGAACCGGGCCCCCGTGGTGCGCACCGAGTATCCGGGCG
TGTACTCGCAACAGGCTCCCGACGGTAAGTTCTACTTTGTGGACGACGACGAGACCCCGCCTACT
CCCCCTGCGCACAACAATGGGTATGAAGGCAACAATGGGTACAATGCTGGCAATGGCACTGGCTA
CGGGGCCGACAATGGCTACGCTGGTGGCGACTACAACGCCAACCCGTACGACGATGCCAATGGGT
ACGACGCGGGGTACAACCAGGGTAACCAGTACCAGCTGGACGAGTTCCGTCCTGGCCACCTGCGC
CAGCCGCTGGGCCGCAGTGTTTACGAGGACTACCCGCGCCGGCAAGCCTACCAATCTCACCACTA
GGGCTGGCCCTTGGAGGCGTGGCCACGTTATAGAGACGGTGAGTGTATGAATAGAGTGTAGTAAT
AATGTAATGATATGAAGAGTGTAGAAGTGGGGAAGTGGGGAAGTG
Right flanking sequence: Indices 44241 -- 44740
GTTCCTTTGTGAAGTGGATTTCTTTGTGAAGTGGATTCATTCAAATGGATATCTTGGGAAGTAGC
TTCATTCGTGCAGTGAGTACCTTGCGAACTGGGTTCATTCGCGAACTGAGTTCTTCTAATATTCC
ATGAGCTTGTTGGAGCCTACTTCTATTGCTTAACCACATGGTTACTCTAAGCGAGGAATTGAAAC
TGGTTCGGTGATTGGTTGATCTGGAACTCGTTAATCAGTTCGTAACCTATTCGTGGTTCTCTTCT
GAATCCACCCTTATGGATACTTCTTCCCCACCTCTGCACAGATCCCCTGGCTGTCCCACTTGGCA
ACCACCTAGAACAGCCCGTCTGTTCCACCCACTACCCTATTGTCCCACTGGTCACATTCCCTGCA
TCAGCCGTGGCGAAGGCAAGAAGCAACCGGGCTATTTTTGGAACGGGACCCGGCAGCAACACAAA
AAAAGAGGCCTCCACCCTACACACTACAGTAAAACCACCCACCAC
Found at i:44257 original size:17 final size:17
Alignment explanation
Indices: 44237--44278 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
44227 TTGTTAGGAG
*
44237 GTGGGTTCCTTTGTGAA
1 GTGGATTCCTTTGTGAA
*
44254 GTGGATTTCTTTGTGAA
1 GTGGATTCCTTTGTGAA
44271 GTGGATTC
1 GTGGATTC
44279 ATTCAAATGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.14, C:0.10, G:0.33, T:0.43
Consensus pattern (17 bp):
GTGGATTCCTTTGTGAA
Left flanking sequence: Indices 43737 -- 44236
CCCCGTGGTGCGCACCGAGTATCCGGGCGTGTACTCGCAACAGGCTCCCGACGGTAAGTTCTACT
TTGTGGACGACGACGAGACCCCGCCTACTCCCCCTGCGCACAACAATGGGTATGAAGGCAACAAT
GGGTACAATGCTGGCAATGGCACTGGCTACGGGGCCGACAATGGCTACGCTGGTGGCGACTACAA
CGCCAACCCGTACGACGATGCCAATGGGTACGACGCGGGGTACAACCAGGGTAACCAGTACCAGC
TGGACGAGTTCCGTCCTGGCCACCTGCGCCAGCCGCTGGGCCGCAGTGTTTACGAGGACTACCCG
CGCCGGCAAGCCTACCAATCTCACCACTAGGGCTGGCCCTTGGAGGCGTGGCCACGTTATAGAGA
CGGTGAGTGTATGAATAGAGTGTAGTAATAATGTAATGATATGAAGAGTGTAGAAGTGGGGAAGT
GGGGAAGTGGGGAGGTGGTTCGTTGGGAGGTGGTTTTGTTAGGAG
Right flanking sequence: Indices 44279 -- 44778
ATTCAAATGGATATCTTGGGAAGTAGCTTCATTCGTGCAGTGAGTACCTTGCGAACTGGGTTCAT
TCGCGAACTGAGTTCTTCTAATATTCCATGAGCTTGTTGGAGCCTACTTCTATTGCTTAACCACA
TGGTTACTCTAAGCGAGGAATTGAAACTGGTTCGGTGATTGGTTGATCTGGAACTCGTTAATCAG
TTCGTAACCTATTCGTGGTTCTCTTCTGAATCCACCCTTATGGATACTTCTTCCCCACCTCTGCA
CAGATCCCCTGGCTGTCCCACTTGGCAACCACCTAGAACAGCCCGTCTGTTCCACCCACTACCCT
ATTGTCCCACTGGTCACATTCCCTGCATCAGCCGTGGCGAAGGCAAGAAGCAACCGGGCTATTTT
TGGAACGGGACCCGGCAGCAACACAAAAAAAGAGGCCTCCACCCTACACACTACAGTAAAACCAC
CCACCACCACCTTCCCCCAGCTCTCCACCGCCCCTGGTAGCCCCC
Found at i:46881 original size:13 final size:12
Alignment explanation
Indices: 46865--46918 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
46855 AGCAAACATG
46865 TGGTACTAACAAT
1 TGGTA-TAACAAT
46878 TGGTATAAACAAT
1 TGGTAT-AACAAT
* *
46891 TGGTGTTAACATT
1 TGGT-ATAACAAT
46904 TGGTAGTAACAAT
1 TGGTA-TAACAAT
46917 TG
1 TG
46919 CTATTGTAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 1 0.03
13 32 0.94
14 1 0.03
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.35
Consensus pattern (12 bp):
TGGTATAACAAT
Left flanking sequence: Indices 46365 -- 46864
GACGCGCCCGTCAGTGGCTCTGCAGCCCTCGGTGGGGTGCCTGACAACCCCGTTGGTGGATCTCG
AAGCTGGGCTGCCGCCCGCGGACCTGTTTGTCACGGCTCCCGAGGGCCCTCCGTCGCCCAAGTTC
ACTGCTCCTCCGATGATCTAGGTGGCCCTGGAGTCCCAGGTGAACACCTACAGGCAAGACCTCCA
CTTTGACCGGCCGCGGGCGGTGTCGTTGCGCCTGGAGCCGTCGGTGAATAGCCAGTACCGACCGC
GGTACGCGCAGCCAGCCCATGTGCTCCGGTGGTATCAGAGCCCGAAGAAGGAGCCAGCTAGCCCG
CAGAGCTCCCGGAGCTCGACGGGCCTGCTCTCAGTGAGCATCGACGAAGACTAGGTGAGAGAAGA
ACGAACAGAACCAGCCCACGAGCTGTAAGAATCGCAGGGCGATACATAATGACTAATACGACGAG
ACATGGTAGACCAGTACACTGGTTGGGACTACTTTAGCAAACATG
Right flanking sequence: Indices 46919 -- 47418
CTATTGTAGCTTATCACAAGACCCAGATTAGACACTGTCCGATGATTACATAACACAGACTTCAC
AAGGTAAATTTAGAACTCTTGTGAACAGTCTCGACCCCGAGACTGAGGCCTGACTCAATCTGACC
CCATCCGGATGGTACGAGGCGTTACCAAATCGGGCCATTTGGTCGTCTCGGCTTGTCTGGCGCGA
CTTTCGTCGGATCATCCGGTAGGAACGACCCTCGTCGGACTTTTTTGTTTCCTTTGGCTTGGCCG
TTGCCTCTATCGCGGCCGATAGTCCCGGGTCAAACTAATAAACCTAAATGCGAAAGCGACTCGAA
ACCCCAAATCACAACTGGTAAAAGTACTAAATAGAAGCCACGTAGCTCTACTAAAAACCGAGCAA
ACCAGCTTCCATCCAGCCCCCCGTCCAGCCCAACGCCACCCCTCTCTGCCAAGTGTCCCTGGCCG
CCTCGCCCCTCCCGAGTTTCCCCGGGTACCCCACAACCGAGTCGC
Found at i:46894 original size:26 final size:26
Alignment explanation
Indices: 46865--46918 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
46855 AGCAAACATG
46865 TGGTACTAACAATTGGTA-TAAACAAT
1 TGGTACTAACAATTGGTAGT-AACAAT
** *
46891 TGGTGTTAACATTTGGTAGTAACAAT
1 TGGTACTAACAATTGGTAGTAACAAT
46917 TG
1 TG
46919 CTATTGTAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.35
Consensus pattern (26 bp):
TGGTACTAACAATTGGTAGTAACAAT
Left flanking sequence: Indices 46365 -- 46864
GACGCGCCCGTCAGTGGCTCTGCAGCCCTCGGTGGGGTGCCTGACAACCCCGTTGGTGGATCTCG
AAGCTGGGCTGCCGCCCGCGGACCTGTTTGTCACGGCTCCCGAGGGCCCTCCGTCGCCCAAGTTC
ACTGCTCCTCCGATGATCTAGGTGGCCCTGGAGTCCCAGGTGAACACCTACAGGCAAGACCTCCA
CTTTGACCGGCCGCGGGCGGTGTCGTTGCGCCTGGAGCCGTCGGTGAATAGCCAGTACCGACCGC
GGTACGCGCAGCCAGCCCATGTGCTCCGGTGGTATCAGAGCCCGAAGAAGGAGCCAGCTAGCCCG
CAGAGCTCCCGGAGCTCGACGGGCCTGCTCTCAGTGAGCATCGACGAAGACTAGGTGAGAGAAGA
ACGAACAGAACCAGCCCACGAGCTGTAAGAATCGCAGGGCGATACATAATGACTAATACGACGAG
ACATGGTAGACCAGTACACTGGTTGGGACTACTTTAGCAAACATG
Right flanking sequence: Indices 46919 -- 47418
CTATTGTAGCTTATCACAAGACCCAGATTAGACACTGTCCGATGATTACATAACACAGACTTCAC
AAGGTAAATTTAGAACTCTTGTGAACAGTCTCGACCCCGAGACTGAGGCCTGACTCAATCTGACC
CCATCCGGATGGTACGAGGCGTTACCAAATCGGGCCATTTGGTCGTCTCGGCTTGTCTGGCGCGA
CTTTCGTCGGATCATCCGGTAGGAACGACCCTCGTCGGACTTTTTTGTTTCCTTTGGCTTGGCCG
TTGCCTCTATCGCGGCCGATAGTCCCGGGTCAAACTAATAAACCTAAATGCGAAAGCGACTCGAA
ACCCCAAATCACAACTGGTAAAAGTACTAAATAGAAGCCACGTAGCTCTACTAAAAACCGAGCAA
ACCAGCTTCCATCCAGCCCCCCGTCCAGCCCAACGCCACCCCTCTCTGCCAAGTGTCCCTGGCCG
CCTCGCCCCTCCCGAGTTTCCCCGGGTACCCCACAACCGAGTCGC
Found at i:57456 original size:21 final size:21
Alignment explanation
Indices: 57412--57459 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
57402 GTGTCGTCGG
* *
57412 CCTTCTGCTTAGCGTCGTGTT
1 CCTTCTGCTTAGCCTCATGTT
57433 CCTTCTGCTTAGCCTCATCG-T
1 CCTTCTGCTTAGCCTCAT-GTT
57454 CCTTCT
1 CCTTCT
57460 CTTCGGTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.06, C:0.35, G:0.17, T:0.42
Consensus pattern (21 bp):
CCTTCTGCTTAGCCTCATGTT
Left flanking sequence: Indices 56912 -- 57411
CAGCACCACGTCACGGGGCTCCCAGTAGCCAATCTTGTCGCGGGCCCACGAGGCAAACGCCCAGT
CCTGGCCACCGGTCCCACGCGGGTCTATGGCAAGCACAATGCAGTCGAGCATGGCGGAGAAGGTC
TGTTTCATCATGATCGCCAGCGATTTGTCCACCTTCTGGGCGCCCGGACCGCCGTACACGTCCAC
GAGGAGCGGGTACTTCTTCGTGGGGTCGAACCCGGGCGGAAGCACCTGCATCACGTTGACCATGA
CCGGGTTCTCGTCGTCGTCGTTGACCTGGACCTGGTAGTACGTGCGCGTGGGGAGGTTGGTGTTC
TTCTTCAACCCGATGATGTGCTCGTTGCGCATCACGTTGGGGAACATCTTGGTGACCACCTCGTA
CGGCTTCGTGAGTTTTTCGGGGGCCTTGTCTTCGGGAGCCGGGTCCTTCTGGGGGAGCTTGACAG
CCTGGGCGGGCTCCTGGTGCTCCTCGGGCTTCTCTGTGTCGTCGG
Right flanking sequence: Indices 57460 -- 57959
CTTCGGTCTTCTCGTCTCTCTTTGCGAGCGACGCTCTCACGTACCCCAACTCCACCAACCGCTGC
CACGGAACCAACTCCGGGCCCTTGTACTGGATGTTGGCCAACTTCCCGTCCGGTGACATGTCCAA
CGTGTGCAACCCCTCCTTCTCGGGGTCGGTGAGGTACCACAAGTCGTTCTCCGCATCGACCTTGG
CCCCAAACACCGTCGAGTCCATCGACGAGTTCTGGGTGCCAAGGGCATACACCCGGTGCTCGTCC
TTGTTGTACCAAATGTCGGTCTTCTGGGTAACGTGCCATTTGTCCAGCGAGGTGATAAACCGCCC
GTGCTTGTCCTCAGCACTGTCAAAGTACGCCAAGTGCATGCGGCCCGTGGTGGCATTGACCACTT
TGTCCACGTACCCGGTGCCGTCCTTTTTGGGCACCAACGCGATGGCCTGCTGCTTCTCCACCCAG
CCTCCGTACGCCTCGGTCACGTTCACCCGGTTGATCTCGGCAAAC
Found at i:60386 original size:15 final size:15
Alignment explanation
Indices: 60366--60398 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
60356 CTCCCCCGAT
60366 TCTGTTTGTTTCAAC
1 TCTGTTTGTTTCAAC
*
60381 TCTGTTTGTTTCACC
1 TCTGTTTGTTTCAAC
60396 TCT
1 TCT
60399 CGTATTTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.12, T:0.55
Consensus pattern (15 bp):
TCTGTTTGTTTCAAC
Left flanking sequence: Indices 59866 -- 60365
ACGTGACAGTTGTGAAGTGCTGAACAGGGAGTGGATGTGAGGTAAACATACATAGCGTTTGACAG
CTAGTCACTGCCTATACCAGCGTGGTACCAATGACGTCAACCATTGCAACCACATTAAGAGGCTT
GTAAACATGTTAGCGGATTCCGGTGACGTTATGGAAGGGGCGGAATGGCCTGGAGTGTTCGTGTG
TACTCAATCTGGCAAATATAATATTGACTTCTTCAGATTTTCTACAACTTTTGCAAATACGTGGG
ATTACTAGTGAGAACCAAAAAGTAAACACAGGGGTTAACTATACGACCAACGCGTTGTAAGCTAT
CACCTTACCCCTCACTCGTGCAACAACACACCACGAGCCCATCTCCCGTAATCTCCCGGCTCACC
GAACCGACCTTCCCCTTCGCTACACAGCCACAGCTGTTACAAACTCTCTCGTAGAACCAAACCCA
CTTCCTCCCCCAAACACAAGCACAGACGCGTTCTTCTCCCCCGAT
Right flanking sequence: Indices 60399 -- 60898
CGTATTTACCAGTTTCAAAGCCACGCCAAGACCATGCCCAATCCACACCAAGCCACATCCCTAGA
TCAACATGAAAATACAGTATCCACACGAAACACACCCTACACACTCAAACCAACACCCATAAACA
CTAAACAGCCCTATTTCTTCCCGCTTTTCCCTTCTTCCCTTCTTCCTTCTACTCTCGTCCCATCC
CACCCATGGCCTGCGAAAAACGCGTACATACACCCACCTGTACCACCAACCCTACTCCATCCCAT
CCCACCCACGCACCCATGGCACTGGTGTACGCCCAATTGTTCGACCCGAGCTACGCCAAGGACGA
GGGCCTCTACAAAGTGCTCTTTGCTACCCCCGTGGTGGAGGACGCCCTCCGCCAGACCATGGTGG
CCAACCTCGACCAGATGATGACCGACGGGGCCAGCGACAATCGCGAGGTGTTTACCGACATGCTA
CGGTACGGAATCACCTTTTTCAACGACGCCATCCGCTACAACACC
Found at i:60520 original size:21 final size:21
Alignment explanation
Indices: 60495--60534 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
60485 CACACGAAAC
*
60495 ACACCC-TACACACTCAAACCA
1 ACACCCATAAACACT-AAACCA
60516 ACACCCATAAACACTAAAC
1 ACACCCATAAACACTAAAC
60535 AGCCCTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.47, C:0.42, G:0.00, T:0.10
Consensus pattern (21 bp):
ACACCCATAAACACTAAACCA
Left flanking sequence: Indices 59995 -- 60494
TGTAAACATGTTAGCGGATTCCGGTGACGTTATGGAAGGGGCGGAATGGCCTGGAGTGTTCGTGT
GTACTCAATCTGGCAAATATAATATTGACTTCTTCAGATTTTCTACAACTTTTGCAAATACGTGG
GATTACTAGTGAGAACCAAAAAGTAAACACAGGGGTTAACTATACGACCAACGCGTTGTAAGCTA
TCACCTTACCCCTCACTCGTGCAACAACACACCACGAGCCCATCTCCCGTAATCTCCCGGCTCAC
CGAACCGACCTTCCCCTTCGCTACACAGCCACAGCTGTTACAAACTCTCTCGTAGAACCAAACCC
ACTTCCTCCCCCAAACACAAGCACAGACGCGTTCTTCTCCCCCGATTCTGTTTGTTTCAACTCTG
TTTGTTTCACCTCTCGTATTTACCAGTTTCAAAGCCACGCCAAGACCATGCCCAATCCACACCAA
GCCACATCCCTAGATCAACATGAAAATACAGTATCCACACGAAAC
Right flanking sequence: Indices 60535 -- 61034
AGCCCTATTTCTTCCCGCTTTTCCCTTCTTCCCTTCTTCCTTCTACTCTCGTCCCATCCCACCCA
TGGCCTGCGAAAAACGCGTACATACACCCACCTGTACCACCAACCCTACTCCATCCCATCCCACC
CACGCACCCATGGCACTGGTGTACGCCCAATTGTTCGACCCGAGCTACGCCAAGGACGAGGGCCT
CTACAAAGTGCTCTTTGCTACCCCCGTGGTGGAGGACGCCCTCCGCCAGACCATGGTGGCCAACC
TCGACCAGATGATGACCGACGGGGCCAGCGACAATCGCGAGGTGTTTACCGACATGCTACGGTAC
GGAATCACCTTTTTCAACGACGCCATCCGCTACAACACCCGCTCAGACGGCCCAGACCCGAAAAA
TTCCGAAAAAGACAACGAAACCTCCGAACCTGAGGCTGATCTCGAGGATGACGGCGATGACATCA
CATCCATGGGCACCGGTGCCACCCAGGCGCCCGAGGAAGACGCCA
Found at i:63171 original size:43 final size:44
Alignment explanation
Indices: 63107--63195 Score: 153
Period size: 43 Copynumber: 2.0 Consensus size: 44
63097 AGAAGAAAAG
* *
63107 GAAAAGCAGTAGCGATGCGTGAT-TAACCGGCAACCGGGTTAGA
1 GAAAAGCAGTAGCGATACGTGATATAACCGGCAACCGGATTAGA
63150 GAAAAGCAGTAGCGATACGTGATATAACCGGCAACCGGATTAGA
1 GAAAAGCAGTAGCGATACGTGATATAACCGGCAACCGGATTAGA
63194 GA
1 GA
63196 TGAGGTGTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 22 0.51
44 21 0.49
ACGTcount: A:0.36, C:0.18, G:0.30, T:0.16
Consensus pattern (44 bp):
GAAAAGCAGTAGCGATACGTGATATAACCGGCAACCGGATTAGA
Left flanking sequence: Indices 62607 -- 63106
GCACGGTGCTGGCGGTGGCCGAGGAGATTCTCGCGGTGTTTGACCAGGTGTTGGAGCCGCGGTTC
AGCCGGGTGGTCGAGCCCGAGCGCCAGCTCTCGATAAACTACGACCTAGTCTATGCGGTGTTGAT
GGACCGCAAGTACGTGGTGGAGGCCATGGGGGCGACCAAGGCGCTGTTCCCGCGGTTGGAGCACT
GTTTGGGCTACTTTGACGACCGCATCCACCTCACCGAGTCGTCCAAGGCCGAGGGGGGCGACAAG
ATTGACTTGTACGACTACAATTTTGACTCGCCAGTGCTCATTGACCTTTTGAACCAGTACTTGGT
CAAGGAGAGCCTTCCTGACACCCCAGCGCTGGGGTTCCGGGCCGAGCTGTTCAAGTACGTCAACG
GCAACGACGAGATGAGCTCGACAGACGCCCTACAGGTGATTAACTTGACGTTGGCTCCCGACTGC
AAGCCCATGTCCCGGTTCTTTCAGGAAAGAGCAGGAGAAGAAAAG
Right flanking sequence: Indices 63196 -- 63695
TGAGGTGTGTATAGAACCGGGTACAAACAGCATAGACCACTAATGTAAGCGCTCCACGGTTACAT
CACCGTACGGGCTCCGCCTCGATCTCATCTCTGCGTCGACCGTTTTTCAGTTCCGATCCAGGCAC
TATGTCATCGGGCATGGTCGTGCATAAAAGTTTATCCGGTGGAATAGACCATCGCTGGCCAGCAG
TTTTCTTGGTATTGTGCCCGCGATGCCGCCGACGTTTGTGGTTTAGTGTTGTGTTGCAATTTCAC
CGGTAGATCTCCAATACATACAGCACGAAAGCACATTTTGTAACAACCCCCAGACAGATGTCCCC
CACACTATCACAGGCTCTTCCACACCGAGGCCCGCGTTGTTCCTTCGCGTTTCACACGCATCGAG
CCCGGCTACCGGTGCAGAGAGCGTCTAGTGTCAAAACGCACGGTGACGGCATAACCGTTGAGGCC
GCGATGACAGGTAACGGGTGGCGCCCGCGGACGAGGGGTCTAGAA
Found at i:67271 original size:20 final size:20
Alignment explanation
Indices: 67246--67298 Score: 90
Period size: 20 Copynumber: 2.6 Consensus size: 20
67236 TTGTGGTCGA
67246 TGGTGAAAACTGGTGA-TCGG
1 TGGTGAAAACTGGTGACT-GG
67266 TGGTGAAAACTGGTGACTGG
1 TGGTGAAAACTGGTGACTGG
67286 TGGTGAAAACTGG
1 TGGTGAAAACTGG
67299 GCTATTTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.26, C:0.09, G:0.40, T:0.25
Consensus pattern (20 bp):
TGGTGAAAACTGGTGACTGG
Left flanking sequence: Indices 66746 -- 67245
GCAAACTGGAAAAGAAACACGGTAAGCTGAACTAAGAACAAACCCATTGAAGCTGTAAATGGTCG
TATTCGCTTGAATTTGACCCCATTTATACCGCTTGATCCTTCGTATTCGGTCAATTCATCTATTC
TTATAGACAATTACAAAAGAAACAACCCGAGGCCTGCAATGACTGCGCCGTACGCGTAGCCCATG
GTGGGGGCACCTCCGCTGTCGGTCTTGGTCTTTGTGAAGTCTTCAAACTCCAGGTCAAGCGACGC
AATCATCGCCGTGTTCGTCTGGATCTCGAGTAACGTTTCGAGGGGAATCAGCCCCAGGAACGAGT
CGTAGAGCATCTGGTACATGAGCCCGATGTTGTTGTAGGTGAACCCCTCGGCCTCCGCGTCGTCT
GCAAACTTGTCGGGCTCCACGGTGATGTAGGTGGTCCCGTCCTCGACGTTGTAGATCTCGGCAAC
GGCTAAAGCAAGAAGAGAGGGAGAGAAGTGCATGTTTGTGGTCGA
Right flanking sequence: Indices 67299 -- 67798
GCTATTTATGACACACTACCCCTGGCTGCGGTGCCTAGCCCTGGCTGCCAAGACGACCAGATAAG
CTGGGGATTGTAGATAGAAAGAGGGTAGAGAAGGAAGCTGAGCGAGAGTAAGCGTGTGTCCAGTT
AGAGCTGACTAGCCACGAGTCTAGCAATCTACAGCAATTGTGGATCTTCCATCTGTCGTTTCATC
TGTGGTTCGTATGGTCACCCCTGGCTAAACCCCGTATCTGCAAGCCCCGATCCGACCGTGACCAC
CGTTGCCAGAATCTATCGTGGTTGTCAACGAATGGGTTCCAGTTACAATCTCAACGGCGATTGTC
ACTCCGGACTATGCCCCTGGGGCTGAGCAAAGGTCACGAGGCCCGTCGCGGCCCGTCGTAGTAAT
GCCAATACGAGCATCAATGCACGGGTGATCACCGTGGCAATACGAGCATGGTGGCATAGTAAACA
GAATGAACAGAATGGTTGAGTAGTCTTATTGCTTGGGTCTAGTTC
Found at i:68466 original size:26 final size:26
Alignment explanation
Indices: 68401--68466 Score: 114
Period size: 26 Copynumber: 2.5 Consensus size: 26
68391 TAGCCGACCA
* *
68401 CCACTCATTGCGAACTGTCACTGCTC
1 CCACTCATTGCGACCTGTCACCGCTC
68427 CCACTCATTGCGACCTGTCACCGCTC
1 CCACTCATTGCGACCTGTCACCGCTC
68453 CCACTCATTGCGAC
1 CCACTCATTGCGAC
68467 TCATTGCGAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.18, C:0.42, G:0.15, T:0.24
Consensus pattern (26 bp):
CCACTCATTGCGACCTGTCACCGCTC
Left flanking sequence: Indices 67901 -- 68400
CCTTCGACCGAGGCTGCCAAGACAGCGTTGGTCTGGAAAGCCTCAAACGTCTCCAATGGGATCAG
CCCCAGGAACGACTCGTAGAGGTAGGCGTAGATGTTTCTGAACTCGGTTCTGGTGACTCCCAACG
ACAGCGCGAGCTTCAGAAACTTGTCGGCGTTGGCGGTGATGTAGGTGGTGCCGTCCTTCTCTTTG
TAGAAGCCATTAGCGGCGACGAGGGGTAGGAGATACAAAAAACGCATGGTTTACGGGTCTCGAGA
GAACCAGGGCTATTTAAATTACCTCGTATTGGTGTTTACGAGGGAATTTCCACCGGAGTTTGGGA
ACCCAGATATTACGTGCATAACCGAAAAGGAATGCCTGAACACGTTCCAGTCACCCAGGTGCTTG
GCAACCAAGGAGTGGCGACGGCAACGACGACATCAACCTGAATGAATACGCTATCAACAGTGTGT
AAAACAGTACTCCTTTAAAGACCTTCAATTCCGTATAGCCGACCA
Right flanking sequence: Indices 68467 -- 68966
TCATTGCGACCTGTCACCGCTCGTATATTGAGAGTCTCATGCACACGGCCCCTTGTCCAGTCCGT
CAGGCCCGCAGACCATCCTACCCCACTATTTTCCCCATAGAGCGGTTGTGGTTATGAGTCCCCAA
AAGCAATAGTGGATCGGGTCATGTGGCTCCAACCCCTGGATACACCATGATTCTACCACGACGTC
TCGAGAAACGGGACAACACCTACACGGGGTTCGTGGTGATCCCCGTGTTGCTTGTGGTTATTTTC
ATGTTGATCGTTCTTCGCCTGAGACGGCAGAGGCGGCTCACGGCCCAGGTAGACGCCCTACCGAA
CCCCCGAACCCGGTTTCCCATCAGTTTCTCGCCGCTAGACCCGCCTCCGGTGCACAGACCCCACC
AAGAGGTGGACGAGGCGTTGCCCGTGTACACCAAGCACCCCGAAGAGCCTCCGCCCGTGTACGTG
CCGCCCTACAAGGAGCAGGCCACGGTGGGGGTTGCCGAGGTGGGG
Found at i:69231 original size:22 final size:21
Alignment explanation
Indices: 69186--69279 Score: 97
Period size: 20 Copynumber: 4.5 Consensus size: 21
69176 GAGTAACGAT
*
69186 GATTAATGGCAAG-TAACAAC
1 GATTAATGGCAAGATAATAAC
69206 GATTAATGGCAAGAGCT-ATAAC
1 GATTAATGGCAAGA--TAATAAC
*
69228 GATTTAA-GGCAAGATAATAGC
1 GA-TTAATGGCAAGATAATAAC
*
69249 GATTAATGGCAAG-TAACAAC
1 GATTAATGGCAAGATAATAAC
69269 GAATTAATGGC
1 G-ATTAATGGC
69280 GAATGAGGGG
Statistics
Matches: 63, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
20 24 0.38
21 21 0.33
22 13 0.21
23 5 0.08
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (21 bp):
GATTAATGGCAAGATAATAAC
Left flanking sequence: Indices 68686 -- 69185
CGGGGTTCGTGGTGATCCCCGTGTTGCTTGTGGTTATTTTCATGTTGATCGTTCTTCGCCTGAGA
CGGCAGAGGCGGCTCACGGCCCAGGTAGACGCCCTACCGAACCCCCGAACCCGGTTTCCCATCAG
TTTCTCGCCGCTAGACCCGCCTCCGGTGCACAGACCCCACCAAGAGGTGGACGAGGCGTTGCCCG
TGTACACCAAGCACCCCGAAGAGCCTCCGCCCGTGTACGTGCCGCCCTACAAGGAGCAGGCCACG
GTGGGGGTTGCCGAGGTGGGGACGAGACACGGCTCGCTCCCCGGCGAGGACATTCCGATGGGGGT
GTTGGCTCGAGACGGAGGCAGTTTGGGCCGAGACAGTCAGGGGGGAGGCAGTTTGAGCCAGGATA
GAGACAGTCTCGGAGGTGGCAGCTTGAGCCAGGATAGAGACAGTCGCGGGTGTTAAAAGGCCTAG
TGCCAATGCAAAGCTGGCTTTGCGGCATAGAGATAGAGTAACGAT
Right flanking sequence: Indices 69280 -- 69779
GAATGAGGGGTTTGTGTTAGCTAACAAGAAGATCTATGTTTCAGAGTACAATAGAGATGATAAGA
CGATAATAAAGACGATAATAAAGAGGATTATTGCATAAAACAAGCGGGCACTAGTAGTTTAACAA
GCTACGTCCCCATTTCACAGCCATCTACCTTGAAACCCTACCAGTTCACCTACCCCACCACACAT
CTTCCCTAAAATTACACCATTTCCAGCCACACCTGAACCCTGAACGGCTGAACCTCCATCCCTTC
TATTGTTCGCGGACTAGCATTATCGGACCAGAGCAAGCCTGGCCAAGGCTGGAAAAACACTGTAG
GGGGCAAACGTAGGCAAACGTCTCTCCCTTGAGCCACCCCAGCTCTCCCTTGAGCCCCCTTCCGG
CTCCGCCTCCTACATCGCCCCATTCGCTCAGGCTGTCTGGCACTGGAGACGCACCTGCCCAACGG
TCGTCAGGGACGTGGGGCCACGAGCCACCCTCGCCGGGCGTTGCC
Found at i:69358 original size:12 final size:12
Alignment explanation
Indices: 69341--69368 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
69331 TAGAGATGAT
69341 AAGACGATAATA
1 AAGACGATAATA
69353 AAGACGATAATA
1 AAGACGATAATA
69365 AAGA
1 AAGA
69369 GGATTATTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.61, C:0.07, G:0.18, T:0.14
Consensus pattern (12 bp):
AAGACGATAATA
Left flanking sequence: Indices 68841 -- 69340
GTGCACAGACCCCACCAAGAGGTGGACGAGGCGTTGCCCGTGTACACCAAGCACCCCGAAGAGCC
TCCGCCCGTGTACGTGCCGCCCTACAAGGAGCAGGCCACGGTGGGGGTTGCCGAGGTGGGGACGA
GACACGGCTCGCTCCCCGGCGAGGACATTCCGATGGGGGTGTTGGCTCGAGACGGAGGCAGTTTG
GGCCGAGACAGTCAGGGGGGAGGCAGTTTGAGCCAGGATAGAGACAGTCTCGGAGGTGGCAGCTT
GAGCCAGGATAGAGACAGTCGCGGGTGTTAAAAGGCCTAGTGCCAATGCAAAGCTGGCTTTGCGG
CATAGAGATAGAGTAACGATGATTAATGGCAAGTAACAACGATTAATGGCAAGAGCTATAACGAT
TTAAGGCAAGATAATAGCGATTAATGGCAAGTAACAACGAATTAATGGCGAATGAGGGGTTTGTG
TTAGCTAACAAGAAGATCTATGTTTCAGAGTACAATAGAGATGAT
Right flanking sequence: Indices 69369 -- 69868
GGATTATTGCATAAAACAAGCGGGCACTAGTAGTTTAACAAGCTACGTCCCCATTTCACAGCCAT
CTACCTTGAAACCCTACCAGTTCACCTACCCCACCACACATCTTCCCTAAAATTACACCATTTCC
AGCCACACCTGAACCCTGAACGGCTGAACCTCCATCCCTTCTATTGTTCGCGGACTAGCATTATC
GGACCAGAGCAAGCCTGGCCAAGGCTGGAAAAACACTGTAGGGGGCAAACGTAGGCAAACGTCTC
TCCCTTGAGCCACCCCAGCTCTCCCTTGAGCCCCCTTCCGGCTCCGCCTCCTACATCGCCCCATT
CGCTCAGGCTGTCTGGCACTGGAGACGCACCTGCCCAACGGTCGTCAGGGACGTGGGGCCACGAG
CCACCCTCGCCGGGCGTTGCCAGTGGCTGTCCCGACGGTTGGGAACCCTCTCCGCCACGTAGCCA
CGTAACAACGCCCGACTCGGCACCGCCCTACACGACGACGCTGGG
Found at i:70018 original size:13 final size:13
Alignment explanation
Indices: 69981--70047 Score: 61
Period size: 13 Copynumber: 5.4 Consensus size: 13
69971 TCTCTTCTCC
69981 ATTCTCCATTCTT
1 ATTCTCCATTCTT
* *
69994 ATTCTTCGTTCTT
1 ATTCTCCATTCTT
*
70007 ATTCTCCATTCTC
1 ATTCTCCATTCTT
*
70020 ATT-TCTATTCTT
1 ATTCTCCATTCTT
70032 -TT-T-CATTCTCT
1 ATTCTCCATTCT-T
70043 ATTCT
1 ATTCT
70048 TTCATTCTCC
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
10 5 0.12
11 4 0.09
12 9 0.21
13 25 0.58
ACGTcount: A:0.13, C:0.27, G:0.01, T:0.58
Consensus pattern (13 bp):
ATTCTCCATTCTT
Left flanking sequence: Indices 69481 -- 69980
TAAAATTACACCATTTCCAGCCACACCTGAACCCTGAACGGCTGAACCTCCATCCCTTCTATTGT
TCGCGGACTAGCATTATCGGACCAGAGCAAGCCTGGCCAAGGCTGGAAAAACACTGTAGGGGGCA
AACGTAGGCAAACGTCTCTCCCTTGAGCCACCCCAGCTCTCCCTTGAGCCCCCTTCCGGCTCCGC
CTCCTACATCGCCCCATTCGCTCAGGCTGTCTGGCACTGGAGACGCACCTGCCCAACGGTCGTCA
GGGACGTGGGGCCACGAGCCACCCTCGCCGGGCGTTGCCAGTGGCTGTCCCGACGGTTGGGAACC
CTCTCCGCCACGTAGCCACGTAACAACGCCCGACTCGGCACCGCCCTACACGACGACGCTGGGCC
AGGCACAGCTACGCCGTGCCGGGTGACGGCCCGACGCTGCCGACACGTCGTACCCACGCAGCCAC
CCAACCGGGCTCATCCTACCTATTCTCATTTTCATTCTCTTCTCC
Right flanking sequence: Indices 70048 -- 70547
TTCATTCTCCTTCCTTCCGGCTTACACCGGGTTATCGTCAAGACTACCCGGTGCTGAAACGGTAA
GAATGTGCGGGGAGTACACGTACACCGATCGCGCACTGATCCTCCCAACACTCTACACACACCAC
CGCCTAACCAAAACCTGCACATCTCCCACCTATCCTCCGCTAACTGATCTCTCCTATCCTCATCC
TCTCATACGCCTCTCAAACTCCTCCCATACTCCTCTCATCCTCCCCCTACACTTCTCTCACACTT
CTCCTACACTTCTCTCGCACTCTCTACACCCCGCCCTTCCTCTCATCTCCACCTACCCTCCTCTC
TCCTCTCCACGTCCGCCGTCTCCTTGCTCTCCTGCACACCGCCCGCGCTCCCCGCGACTTGATCG
GGCGCACCGCACCACGTCCCCATAGGTCTAACAACCACCAAGCTCCACACTCTGTTCGTTTACCC
CTCCTCCTGCGGTCTTCCTTCGGCATCCCTGTTTTCTGACTGCCG
Found at i:70022 original size:6 final size:6
Alignment explanation
Indices: 69957--70047 Score: 55
Period size: 6 Copynumber: 14.8 Consensus size: 6
69947 CATCCTACCT
* * * *
69957 ATTCTC ATTTTC ATTCTC -TTCTCC ATTCTCC ATTCTT ATTCTTC GTTCTT
1 ATTCTC ATTCTC ATTCTC ATTCT-C ATTCT-C ATTCTC ATTC-TC ATTCTC
*
70007 ATTCTCC ATTCTC ATT-TC TATTCT- -TTTTC ATTCTC TATTCT
1 ATTCT-C ATTCTC ATTCTC -ATTCTC ATTCTC ATTCTC -ATTCT
70048 TTCATTCTCC
Statistics
Matches: 66, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
4 3 0.05
5 6 0.09
6 31 0.47
7 26 0.39
ACGTcount: A:0.13, C:0.29, G:0.01, T:0.57
Consensus pattern (6 bp):
ATTCTC
Left flanking sequence: Indices 69457 -- 69956
ACCTACCCCACCACACATCTTCCCTAAAATTACACCATTTCCAGCCACACCTGAACCCTGAACGG
CTGAACCTCCATCCCTTCTATTGTTCGCGGACTAGCATTATCGGACCAGAGCAAGCCTGGCCAAG
GCTGGAAAAACACTGTAGGGGGCAAACGTAGGCAAACGTCTCTCCCTTGAGCCACCCCAGCTCTC
CCTTGAGCCCCCTTCCGGCTCCGCCTCCTACATCGCCCCATTCGCTCAGGCTGTCTGGCACTGGA
GACGCACCTGCCCAACGGTCGTCAGGGACGTGGGGCCACGAGCCACCCTCGCCGGGCGTTGCCAG
TGGCTGTCCCGACGGTTGGGAACCCTCTCCGCCACGTAGCCACGTAACAACGCCCGACTCGGCAC
CGCCCTACACGACGACGCTGGGCCAGGCACAGCTACGCCGTGCCGGGTGACGGCCCGACGCTGCC
GACACGTCGTACCCACGCAGCCACCCAACCGGGCTCATCCTACCT
Right flanking sequence: Indices 70048 -- 70547
TTCATTCTCCTTCCTTCCGGCTTACACCGGGTTATCGTCAAGACTACCCGGTGCTGAAACGGTAA
GAATGTGCGGGGAGTACACGTACACCGATCGCGCACTGATCCTCCCAACACTCTACACACACCAC
CGCCTAACCAAAACCTGCACATCTCCCACCTATCCTCCGCTAACTGATCTCTCCTATCCTCATCC
TCTCATACGCCTCTCAAACTCCTCCCATACTCCTCTCATCCTCCCCCTACACTTCTCTCACACTT
CTCCTACACTTCTCTCGCACTCTCTACACCCCGCCCTTCCTCTCATCTCCACCTACCCTCCTCTC
TCCTCTCCACGTCCGCCGTCTCCTTGCTCTCCTGCACACCGCCCGCGCTCCCCGCGACTTGATCG
GGCGCACCGCACCACGTCCCCATAGGTCTAACAACCACCAAGCTCCACACTCTGTTCGTTTACCC
CTCCTCCTGCGGTCTTCCTTCGGCATCCCTGTTTTCTGACTGCCG
Found at i:70045 original size:17 final size:16
Alignment explanation
Indices: 70018--70049 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
70008 TTCTCCATTC
70018 TCATTTCTATTCTTTT
1 TCATTTCTATTCTTTT
70034 TCATTCTCTATTCTTT
1 TCATT-TCTATTCTTT
70050 CATTCTCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.12, C:0.22, G:0.00, T:0.66
Consensus pattern (16 bp):
TCATTTCTATTCTTTT
Left flanking sequence: Indices 69518 -- 70017
ACGGCTGAACCTCCATCCCTTCTATTGTTCGCGGACTAGCATTATCGGACCAGAGCAAGCCTGGC
CAAGGCTGGAAAAACACTGTAGGGGGCAAACGTAGGCAAACGTCTCTCCCTTGAGCCACCCCAGC
TCTCCCTTGAGCCCCCTTCCGGCTCCGCCTCCTACATCGCCCCATTCGCTCAGGCTGTCTGGCAC
TGGAGACGCACCTGCCCAACGGTCGTCAGGGACGTGGGGCCACGAGCCACCCTCGCCGGGCGTTG
CCAGTGGCTGTCCCGACGGTTGGGAACCCTCTCCGCCACGTAGCCACGTAACAACGCCCGACTCG
GCACCGCCCTACACGACGACGCTGGGCCAGGCACAGCTACGCCGTGCCGGGTGACGGCCCGACGC
TGCCGACACGTCGTACCCACGCAGCCACCCAACCGGGCTCATCCTACCTATTCTCATTTTCATTC
TCTTCTCCATTCTCCATTCTTATTCTTCGTTCTTATTCTCCATTC
Right flanking sequence: Indices 70050 -- 70549
CATTCTCCTTCCTTCCGGCTTACACCGGGTTATCGTCAAGACTACCCGGTGCTGAAACGGTAAGA
ATGTGCGGGGAGTACACGTACACCGATCGCGCACTGATCCTCCCAACACTCTACACACACCACCG
CCTAACCAAAACCTGCACATCTCCCACCTATCCTCCGCTAACTGATCTCTCCTATCCTCATCCTC
TCATACGCCTCTCAAACTCCTCCCATACTCCTCTCATCCTCCCCCTACACTTCTCTCACACTTCT
CCTACACTTCTCTCGCACTCTCTACACCCCGCCCTTCCTCTCATCTCCACCTACCCTCCTCTCTC
CTCTCCACGTCCGCCGTCTCCTTGCTCTCCTGCACACCGCCCGCGCTCCCCGCGACTTGATCGGG
CGCACCGCACCACGTCCCCATAGGTCTAACAACCACCAAGCTCCACACTCTGTTCGTTTACCCCT
CCTCCTGCGGTCTTCCTTCGGCATCCCTGTTTTCTGACTGCCGAC
Found at i:70050 original size:15 final size:16
Alignment explanation
Indices: 70018--70056 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
70008 TTCTCCATTC
70018 TCATT-TCTATTCTTTT
1 TCATTCTCTATTC-TTT
70034 TCATTCTCTATTC-TT
1 TCATTCTCTATTCTTT
70049 TCATTCTC
1 TCATTCTC
70057 CTTCCTTCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.45
16 5 0.23
17 7 0.32
ACGTcount: A:0.13, C:0.26, G:0.00, T:0.62
Consensus pattern (16 bp):
TCATTCTCTATTCTTT
Left flanking sequence: Indices 69518 -- 70017
ACGGCTGAACCTCCATCCCTTCTATTGTTCGCGGACTAGCATTATCGGACCAGAGCAAGCCTGGC
CAAGGCTGGAAAAACACTGTAGGGGGCAAACGTAGGCAAACGTCTCTCCCTTGAGCCACCCCAGC
TCTCCCTTGAGCCCCCTTCCGGCTCCGCCTCCTACATCGCCCCATTCGCTCAGGCTGTCTGGCAC
TGGAGACGCACCTGCCCAACGGTCGTCAGGGACGTGGGGCCACGAGCCACCCTCGCCGGGCGTTG
CCAGTGGCTGTCCCGACGGTTGGGAACCCTCTCCGCCACGTAGCCACGTAACAACGCCCGACTCG
GCACCGCCCTACACGACGACGCTGGGCCAGGCACAGCTACGCCGTGCCGGGTGACGGCCCGACGC
TGCCGACACGTCGTACCCACGCAGCCACCCAACCGGGCTCATCCTACCTATTCTCATTTTCATTC
TCTTCTCCATTCTCCATTCTTATTCTTCGTTCTTATTCTCCATTC
Right flanking sequence: Indices 70057 -- 70556
CTTCCTTCCGGCTTACACCGGGTTATCGTCAAGACTACCCGGTGCTGAAACGGTAAGAATGTGCG
GGGAGTACACGTACACCGATCGCGCACTGATCCTCCCAACACTCTACACACACCACCGCCTAACC
AAAACCTGCACATCTCCCACCTATCCTCCGCTAACTGATCTCTCCTATCCTCATCCTCTCATACG
CCTCTCAAACTCCTCCCATACTCCTCTCATCCTCCCCCTACACTTCTCTCACACTTCTCCTACAC
TTCTCTCGCACTCTCTACACCCCGCCCTTCCTCTCATCTCCACCTACCCTCCTCTCTCCTCTCCA
CGTCCGCCGTCTCCTTGCTCTCCTGCACACCGCCCGCGCTCCCCGCGACTTGATCGGGCGCACCG
CACCACGTCCCCATAGGTCTAACAACCACCAAGCTCCACACTCTGTTCGTTTACCCCTCCTCCTG
CGGTCTTCCTTCGGCATCCCTGTTTTCTGACTGCCGACATGGACG
Found at i:70255 original size:11 final size:11
Alignment explanation
Indices: 70240--70286 Score: 58
Period size: 11 Copynumber: 4.3 Consensus size: 11
70230 CCTATCCTCA
70240 TCCTCTCATAC
1 TCCTCTCATAC
* *
70251 GCCTCTCAAAC
1 TCCTCTCATAC
*
70262 TCCTCCCATAC
1 TCCTCTCATAC
*
70273 TCCTCTCATCC
1 TCCTCTCATAC
70284 TCC
1 TCC
70287 CCCTACACTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.17, C:0.51, G:0.02, T:0.30
Consensus pattern (11 bp):
TCCTCTCATAC
Left flanking sequence: Indices 69740 -- 70239
AGGGACGTGGGGCCACGAGCCACCCTCGCCGGGCGTTGCCAGTGGCTGTCCCGACGGTTGGGAAC
CCTCTCCGCCACGTAGCCACGTAACAACGCCCGACTCGGCACCGCCCTACACGACGACGCTGGGC
CAGGCACAGCTACGCCGTGCCGGGTGACGGCCCGACGCTGCCGACACGTCGTACCCACGCAGCCA
CCCAACCGGGCTCATCCTACCTATTCTCATTTTCATTCTCTTCTCCATTCTCCATTCTTATTCTT
CGTTCTTATTCTCCATTCTCATTTCTATTCTTTTTCATTCTCTATTCTTTCATTCTCCTTCCTTC
CGGCTTACACCGGGTTATCGTCAAGACTACCCGGTGCTGAAACGGTAAGAATGTGCGGGGAGTAC
ACGTACACCGATCGCGCACTGATCCTCCCAACACTCTACACACACCACCGCCTAACCAAAACCTG
CACATCTCCCACCTATCCTCCGCTAACTGATCTCTCCTATCCTCA
Right flanking sequence: Indices 70287 -- 70786
CCCTACACTTCTCTCACACTTCTCCTACACTTCTCTCGCACTCTCTACACCCCGCCCTTCCTCTC
ATCTCCACCTACCCTCCTCTCTCCTCTCCACGTCCGCCGTCTCCTTGCTCTCCTGCACACCGCCC
GCGCTCCCCGCGACTTGATCGGGCGCACCGCACCACGTCCCCATAGGTCTAACAACCACCAAGCT
CCACACTCTGTTCGTTTACCCCTCCTCCTGCGGTCTTCCTTCGGCATCCCTGTTTTCTGACTGCC
GACATGGACGTCCTAGTGCTGACCCCGGCCCGCGGCGGCGGCATGTGCGTGGTGGAGGTGTCGCG
CGGCGCGTGGGGCCCCCCGGTGGCGGCGGGGCACCCGCACGTCACCCAGGTGCTCACGGGGCGCA
CCGCCAACCACAAGCACTGGCTCGCGGTGGTGCGCGCCCTGGGGCTCATCCAGTTGTACGAGCGC
CTGGCCGAGCAATACCTGTTGTTTAAGGAGTGGAAGAACCTGGTG
Found at i:70300 original size:22 final size:22
Alignment explanation
Indices: 70253--70329 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 22
70243 TCTCATACGC
* * *
70253 CTCTCAAACTCCTCCC-ATACTC
1 CTCTCACACTCC-CCCTACACTT
70275 CTCTCATC-CTCCCCCTACACTT
1 CTCTCA-CACTCCCCCTACACTT
* *
70297 CTCTCACACTTCTCCTACACTT
1 CTCTCACACTCCCCCTACACTT
*
70319 CTCTCGCACTC
1 CTCTCACACTC
70330 TCTACACCCC
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
21 4 0.09
22 41 0.91
ACGTcount: A:0.17, C:0.51, G:0.01, T:0.31
Consensus pattern (22 bp):
CTCTCACACTCCCCCTACACTT
Left flanking sequence: Indices 69753 -- 70252
CACGAGCCACCCTCGCCGGGCGTTGCCAGTGGCTGTCCCGACGGTTGGGAACCCTCTCCGCCACG
TAGCCACGTAACAACGCCCGACTCGGCACCGCCCTACACGACGACGCTGGGCCAGGCACAGCTAC
GCCGTGCCGGGTGACGGCCCGACGCTGCCGACACGTCGTACCCACGCAGCCACCCAACCGGGCTC
ATCCTACCTATTCTCATTTTCATTCTCTTCTCCATTCTCCATTCTTATTCTTCGTTCTTATTCTC
CATTCTCATTTCTATTCTTTTTCATTCTCTATTCTTTCATTCTCCTTCCTTCCGGCTTACACCGG
GTTATCGTCAAGACTACCCGGTGCTGAAACGGTAAGAATGTGCGGGGAGTACACGTACACCGATC
GCGCACTGATCCTCCCAACACTCTACACACACCACCGCCTAACCAAAACCTGCACATCTCCCACC
TATCCTCCGCTAACTGATCTCTCCTATCCTCATCCTCTCATACGC
Right flanking sequence: Indices 70330 -- 70829
TCTACACCCCGCCCTTCCTCTCATCTCCACCTACCCTCCTCTCTCCTCTCCACGTCCGCCGTCTC
CTTGCTCTCCTGCACACCGCCCGCGCTCCCCGCGACTTGATCGGGCGCACCGCACCACGTCCCCA
TAGGTCTAACAACCACCAAGCTCCACACTCTGTTCGTTTACCCCTCCTCCTGCGGTCTTCCTTCG
GCATCCCTGTTTTCTGACTGCCGACATGGACGTCCTAGTGCTGACCCCGGCCCGCGGCGGCGGCA
TGTGCGTGGTGGAGGTGTCGCGCGGCGCGTGGGGCCCCCCGGTGGCGGCGGGGCACCCGCACGTC
ACCCAGGTGCTCACGGGGCGCACCGCCAACCACAAGCACTGGCTCGCGGTGGTGCGCGCCCTGGG
GCTCATCCAGTTGTACGAGCGCCTGGCCGAGCAATACCTGTTGTTTAAGGAGTGGAAGAACCTGG
TGGTGACGCCCGACGACCCCGTGGTGGCCGCGGGGTTTGCGGGCC
Found at i:70305 original size:11 final size:11
Alignment explanation
Indices: 70291--70336 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
70281 TCCTCCCCCT
70291 ACACTTCTCTC
1 ACACTTCTCTC
70302 ACACTTCTC-C
1 ACACTTCTCTC
70312 TACACTTCTCTC
1 -ACACTTCTCTC
*
70324 GCAC-TCTCT-
1 ACACTTCTCTC
70333 ACAC
1 ACAC
70337 CCCGCCCTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
9 3 0.10
10 6 0.19
11 21 0.68
12 1 0.03
ACGTcount: A:0.20, C:0.46, G:0.02, T:0.33
Consensus pattern (11 bp):
ACACTTCTCTC
Left flanking sequence: Indices 69791 -- 70290
CGACGGTTGGGAACCCTCTCCGCCACGTAGCCACGTAACAACGCCCGACTCGGCACCGCCCTACA
CGACGACGCTGGGCCAGGCACAGCTACGCCGTGCCGGGTGACGGCCCGACGCTGCCGACACGTCG
TACCCACGCAGCCACCCAACCGGGCTCATCCTACCTATTCTCATTTTCATTCTCTTCTCCATTCT
CCATTCTTATTCTTCGTTCTTATTCTCCATTCTCATTTCTATTCTTTTTCATTCTCTATTCTTTC
ATTCTCCTTCCTTCCGGCTTACACCGGGTTATCGTCAAGACTACCCGGTGCTGAAACGGTAAGAA
TGTGCGGGGAGTACACGTACACCGATCGCGCACTGATCCTCCCAACACTCTACACACACCACCGC
CTAACCAAAACCTGCACATCTCCCACCTATCCTCCGCTAACTGATCTCTCCTATCCTCATCCTCT
CATACGCCTCTCAAACTCCTCCCATACTCCTCTCATCCTCCCCCT
Right flanking sequence: Indices 70337 -- 70836
CCCGCCCTTCCTCTCATCTCCACCTACCCTCCTCTCTCCTCTCCACGTCCGCCGTCTCCTTGCTC
TCCTGCACACCGCCCGCGCTCCCCGCGACTTGATCGGGCGCACCGCACCACGTCCCCATAGGTCT
AACAACCACCAAGCTCCACACTCTGTTCGTTTACCCCTCCTCCTGCGGTCTTCCTTCGGCATCCC
TGTTTTCTGACTGCCGACATGGACGTCCTAGTGCTGACCCCGGCCCGCGGCGGCGGCATGTGCGT
GGTGGAGGTGTCGCGCGGCGCGTGGGGCCCCCCGGTGGCGGCGGGGCACCCGCACGTCACCCAGG
TGCTCACGGGGCGCACCGCCAACCACAAGCACTGGCTCGCGGTGGTGCGCGCCCTGGGGCTCATC
CAGTTGTACGAGCGCCTGGCCGAGCAATACCTGTTGTTTAAGGAGTGGAAGAACCTGGTGGTGAC
GCCCGACGACCCCGTGGTGGCCGCGGGGTTTGCGGGCCACCGCTA
Found at i:72026 original size:27 final size:26
Alignment explanation
Indices: 71967--72050 Score: 116
Period size: 27 Copynumber: 3.2 Consensus size: 26
71957 GAAATGAGAC
* * *
71967 AAGGAGGGGTGGACG-AAGCGTAGGAG
1 AAGGA-GGGTAGACGAAAGTGTAGGGG
71993 AAGGAGGGTAGACGAAAGTGTAGGGGG
1 AAGGAGGGTAGACGAAAGTGTA-GGGG
72020 AAGGAGGGTAGACGAAAGTGTAGGGG
1 AAGGAGGGTAGACGAAAGTGTAGGGG
72046 AAGGA
1 AAGGA
72051 ATGGGTTAGA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
25 8 0.15
26 20 0.38
27 25 0.47
ACGTcount: A:0.35, C:0.05, G:0.51, T:0.10
Consensus pattern (26 bp):
AAGGAGGGTAGACGAAAGTGTAGGGG
Left flanking sequence: Indices 71467 -- 71966
CCACGTGTTCTTCTGCGACGGCATTGCCCAGATGGGGGTGATTGACGTGGCCCGGATGGCGGTGG
TGCAGCGGTTCTCGTTTGCGGGGGTGGGCCCCGTGCACCTGTGGCTGGTGGTGGCGCTGGAGAGC
ACCAGCCCCGCCGCCAGCTGCTGGTACGCCGTGGTCACCGCCATGGACCACTCGCTCGCCGTGTT
CAAGCTCCGCCCGCTGCTGACCCAGGCGGTGATGGTGAGCCGGGTGTCGTGCCCGCTGGCAGCCC
CGCTGGCGTGTGTGCTCGGCACCCACCGCGACATGGAGCGGGTGTTTGGCGACGGCACCTCCCCG
CCGGCGGTGGAGAGCTACGAGGTGTGCGCGCTGGGGGCGCTGACCCCCGACACCGCGCCGTGGGT
GGAGGCGGTGCTGCCGAAGCGGCGCCACCGGCTGGTGCCCGGGTGCACCAAAAAGACCAAGTTGG
ATAAGATCAAGCTTACGAATGTATGAGAAATGAAAGAAATGAGAC
Right flanking sequence: Indices 72051 -- 72550
ATGGGTTAGACGGGAGACGGGTTAAAAGTGTAAGAGTGTCAGGATGGGGAGTGTGGAGGGTGAGA
GTACGGATGTGTGCGGAGGGTGTGTATGTGAGGAGAGTGTGAGGAGAGTGTGAGGAGAGTGTGTG
TAGGGCTTGTAGAGTGTGTGGAATATGTAGAGTATGGCATGTGTGACGCGTGTGACGCGTGTGGA
GCTGTGTGGAGCGTGTGTGGAGAGGTGCTGTGGGGAAACCACTTGATCAATTGGTTGAGAAGCGA
ATCAGTCGAGGAAATAGAGTGTCCACACCAACTCTTTCTCAATCGTTTGTTCTACAGTTGTTTGA
GCATTGCAACTTGTGTAGCACATAAGGTGGGATGATAAGGTAGGACGTGAAATATATCCTATTAG
TGTCCAGAACTAAACAGGATGCCACAATGAAACCAACACATTCGGAGGCATGGTACACCATCACA
ACACTTTGATGACTAGCGAAACACCCACACGCCAATCAGCCCATT
Found at i:72156 original size:11 final size:11
Alignment explanation
Indices: 72142--72178 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
72132 AGGGTGTGTA
72142 TGTGAGGAGAG
1 TGTGAGGAGAG
72153 TGTGAGGAGAG
1 TGTGAGGAGAG
72164 TGTGAGGAGAG
1 TGTGAGGAGAG
72175 TGTG
1 TGTG
72179 TGTAGGGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.24, C:0.00, G:0.54, T:0.22
Consensus pattern (11 bp):
TGTGAGGAGAG
Left flanking sequence: Indices 71642 -- 72141
GACCACTCGCTCGCCGTGTTCAAGCTCCGCCCGCTGCTGACCCAGGCGGTGATGGTGAGCCGGGT
GTCGTGCCCGCTGGCAGCCCCGCTGGCGTGTGTGCTCGGCACCCACCGCGACATGGAGCGGGTGT
TTGGCGACGGCACCTCCCCGCCGGCGGTGGAGAGCTACGAGGTGTGCGCGCTGGGGGCGCTGACC
CCCGACACCGCGCCGTGGGTGGAGGCGGTGCTGCCGAAGCGGCGCCACCGGCTGGTGCCCGGGTG
CACCAAAAAGACCAAGTTGGATAAGATCAAGCTTACGAATGTATGAGAAATGAAAGAAATGAGAC
AAGGAGGGGTGGACGAAGCGTAGGAGAAGGAGGGTAGACGAAAGTGTAGGGGGAAGGAGGGTAGA
CGAAAGTGTAGGGGAAGGAATGGGTTAGACGGGAGACGGGTTAAAAGTGTAAGAGTGTCAGGATG
GGGAGTGTGGAGGGTGAGAGTACGGATGTGTGCGGAGGGTGTGTA
Right flanking sequence: Indices 72179 -- 72678
TGTAGGGCTTGTAGAGTGTGTGGAATATGTAGAGTATGGCATGTGTGACGCGTGTGACGCGTGTG
GAGCTGTGTGGAGCGTGTGTGGAGAGGTGCTGTGGGGAAACCACTTGATCAATTGGTTGAGAAGC
GAATCAGTCGAGGAAATAGAGTGTCCACACCAACTCTTTCTCAATCGTTTGTTCTACAGTTGTTT
GAGCATTGCAACTTGTGTAGCACATAAGGTGGGATGATAAGGTAGGACGTGAAATATATCCTATT
AGTGTCCAGAACTAAACAGGATGCCACAATGAAACCAACACATTCGGAGGCATGGTACACCATCA
CAACACTTTGATGACTAGCGAAACACCCACACGCCAATCAGCCCATTTCCAAGTGTATTTCGATC
GATCTCGACTGAGGTTACGAGGTTATGAGCTTCAAAGACTATTCGTAAATAGTGGCCCAAAGTGA
CCCAATCAACCAAAAGTCAGCCACTAACTACACCATCCCATAGGT
Found at i:72718 original size:17 final size:17
Alignment explanation
Indices: 72684--72752 Score: 113
Period size: 17 Copynumber: 4.1 Consensus size: 17
72674 TAGGTCACCA
*
72684 CCACTACTTCAA-CCCT
1 CCACCACTTCAACCCCT
72700 CCACCACTTCAACCCCT
1 CCACCACTTCAACCCCT
72717 CCACCACTTCAACCCCT
1 CCACCACTTCAACCCCT
*
72734 CCACCACTTCAACCACT
1 CCACCACTTCAACCCCT
72751 CC
1 CC
72753 TCAATCCCCC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
16 11 0.22
17 39 0.78
ACGTcount: A:0.25, C:0.57, G:0.00, T:0.19
Consensus pattern (17 bp):
CCACCACTTCAACCCCT
Left flanking sequence: Indices 72184 -- 72683
GGCTTGTAGAGTGTGTGGAATATGTAGAGTATGGCATGTGTGACGCGTGTGACGCGTGTGGAGCT
GTGTGGAGCGTGTGTGGAGAGGTGCTGTGGGGAAACCACTTGATCAATTGGTTGAGAAGCGAATC
AGTCGAGGAAATAGAGTGTCCACACCAACTCTTTCTCAATCGTTTGTTCTACAGTTGTTTGAGCA
TTGCAACTTGTGTAGCACATAAGGTGGGATGATAAGGTAGGACGTGAAATATATCCTATTAGTGT
CCAGAACTAAACAGGATGCCACAATGAAACCAACACATTCGGAGGCATGGTACACCATCACAACA
CTTTGATGACTAGCGAAACACCCACACGCCAATCAGCCCATTTCCAAGTGTATTTCGATCGATCT
CGACTGAGGTTACGAGGTTATGAGCTTCAAAGACTATTCGTAAATAGTGGCCCAAAGTGACCCAA
TCAACCAAAAGTCAGCCACTAACTACACCATCCCATAGGTCACCA
Right flanking sequence: Indices 72753 -- 73252
TCAATCCCCCCCTCCACCCTTCTCAATTATAATCGCCCCTTGCACCTGAAACGCGTGGCCATGAC
AACGGAGTCACTGGCTCCGTGACGACCCACACAGGTATATAGCCTCCAGAATACCACGCGACCAC
CACCCGACCCCAAATGTCTTTTACTGTCGCCAAACTCGGTAAACAAGCAATCACCCACACCCCCG
GATGGATCCTTTTGGCCGAGCTCCTCTGGCGTCTCGTCCGCGACTGGCCCTCGTTGACCCCGGCT
CAGATCTTGCTCCGGCTGTTGTGGATCGCCGGTACCATTGTTAGTGGGGTTATCCGCATGAGAAT
GTGTGACGTGCCCATCTACAACTCGTTGATCACCATTGCCAACACGTTGTTTCTGTTTAAGGAGA
GCTTACCGCACGTGCTGCTCTCGGTGGGGATCTTTTTGGTGGTGGCCCTTGACTTTTTGGGCCTT
TGCTCGGAGGAAATCGACAACGAGGAGAACCCGTTGTTGCCAGAG
Found at i:72750 original size:9 final size:9
Alignment explanation
Indices: 72689--72750 Score: 51
Period size: 9 Copynumber: 7.3 Consensus size: 9
72679 CACCACCACT
72689 ACTTCAACC
1 ACTTCAACC
*
72698 -C-TCCACC
1 ACTTCAACC
72705 ACTTCAACC
1 ACTTCAACC
* *
72714 -CCTCCACC
1 ACTTCAACC
72722 ACTTCAACC
1 ACTTCAACC
* *
72731 -CCTCCACC
1 ACTTCAACC
72739 ACTTCAACC
1 ACTTCAACC
72748 ACT
1 ACT
72751 CCTCAATCCC
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
7 5 0.13
8 14 0.36
9 20 0.51
ACGTcount: A:0.26, C:0.55, G:0.00, T:0.19
Consensus pattern (9 bp):
ACTTCAACC
Left flanking sequence: Indices 72189 -- 72688
GTAGAGTGTGTGGAATATGTAGAGTATGGCATGTGTGACGCGTGTGACGCGTGTGGAGCTGTGTG
GAGCGTGTGTGGAGAGGTGCTGTGGGGAAACCACTTGATCAATTGGTTGAGAAGCGAATCAGTCG
AGGAAATAGAGTGTCCACACCAACTCTTTCTCAATCGTTTGTTCTACAGTTGTTTGAGCATTGCA
ACTTGTGTAGCACATAAGGTGGGATGATAAGGTAGGACGTGAAATATATCCTATTAGTGTCCAGA
ACTAAACAGGATGCCACAATGAAACCAACACATTCGGAGGCATGGTACACCATCACAACACTTTG
ATGACTAGCGAAACACCCACACGCCAATCAGCCCATTTCCAAGTGTATTTCGATCGATCTCGACT
GAGGTTACGAGGTTATGAGCTTCAAAGACTATTCGTAAATAGTGGCCCAAAGTGACCCAATCAAC
CAAAAGTCAGCCACTAACTACACCATCCCATAGGTCACCACCACT
Right flanking sequence: Indices 72751 -- 73250
CCTCAATCCCCCCCTCCACCCTTCTCAATTATAATCGCCCCTTGCACCTGAAACGCGTGGCCATG
ACAACGGAGTCACTGGCTCCGTGACGACCCACACAGGTATATAGCCTCCAGAATACCACGCGACC
ACCACCCGACCCCAAATGTCTTTTACTGTCGCCAAACTCGGTAAACAAGCAATCACCCACACCCC
CGGATGGATCCTTTTGGCCGAGCTCCTCTGGCGTCTCGTCCGCGACTGGCCCTCGTTGACCCCGG
CTCAGATCTTGCTCCGGCTGTTGTGGATCGCCGGTACCATTGTTAGTGGGGTTATCCGCATGAGA
ATGTGTGACGTGCCCATCTACAACTCGTTGATCACCATTGCCAACACGTTGTTTCTGTTTAAGGA
GAGCTTACCGCACGTGCTGCTCTCGGTGGGGATCTTTTTGGTGGTGGCCCTTGACTTTTTGGGCC
TTTGCTCGGAGGAAATCGACAACGAGGAGAACCCGTTGTTGCCAG
Found at i:73345 original size:20 final size:20
Alignment explanation
Indices: 73318--73408 Score: 62
Period size: 22 Copynumber: 4.5 Consensus size: 20
73308 CACAACGTAG
73318 AAATAGGCTAGCTCCCCACC
1 AAATAGGCTAGCTCCCCACC
* *
73338 AGATAGGC---CTTCCCACC
1 AAATAGGCTAGCTCCCCACC
* * *
73355 ACCGATAGGCGAACTCCCCACTAC
1 A--AATAGGCTAGCTCCCCAC--C
* *
73379 AAATAGGCTAGCTCACCACT
1 AAATAGGCTAGCTCCCCACC
73399 AAATAGGCTA
1 AAATAGGCTA
73409 ATTCCCCAAC
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
17 9 0.16
19 7 0.12
20 17 0.30
22 21 0.38
24 2 0.04
ACGTcount: A:0.32, C:0.35, G:0.16, T:0.16
Consensus pattern (20 bp):
AAATAGGCTAGCTCCCCACC
Left flanking sequence: Indices 72818 -- 73317
AACGGAGTCACTGGCTCCGTGACGACCCACACAGGTATATAGCCTCCAGAATACCACGCGACCAC
CACCCGACCCCAAATGTCTTTTACTGTCGCCAAACTCGGTAAACAAGCAATCACCCACACCCCCG
GATGGATCCTTTTGGCCGAGCTCCTCTGGCGTCTCGTCCGCGACTGGCCCTCGTTGACCCCGGCT
CAGATCTTGCTCCGGCTGTTGTGGATCGCCGGTACCATTGTTAGTGGGGTTATCCGCATGAGAAT
GTGTGACGTGCCCATCTACAACTCGTTGATCACCATTGCCAACACGTTGTTTCTGTTTAAGGAGA
GCTTACCGCACGTGCTGCTCTCGGTGGGGATCTTTTTGGTGGTGGCCCTTGACTTTTTGGGCCTT
TGCTCGGAGGAAATCGACAACGAGGAGAACCCGTTGTTGCCAGAGTAGTTTTGCAGCCAGTTACA
TGCAGGAGATGAATAAATGGAGTCACGTGATATGCCACAACGTAG
Right flanking sequence: Indices 73409 -- 73908
ATTCCCCAACTCCAGTACCACCCCACAACCACGCTAGCCCCACTGTAGACCACCCCATCCCCACT
GTAGACCACCCACCACGCCCAAACTACGTCCATTACCTCCCTTAATCTACACCCCTCCAATACCC
CCCACTACCTTCCCCTACACCCATCATCCCACTATATTACATTCATTTTCCCCTATCTAGCTCGA
CCCCGACACCACCAACTTGCGCAAGTGGTCCATAAACACCTGCAACGACACGTCGTCGGTCAACA
CAATGGCGCCGTTGTTGGTGGCAAACTCGTTCGAGTTGTAGGTGGTCGAAGGGTTAAGCTTCGAC
AACAAGAACCGCGCCTGCGACCCGCCCTCCTCGGTGACAATGTACCGCGGCAACGGGTACCGGTC
GATCAAAAGCTCCTTGGCCTCCTGCTTGGGCTCGTCCAACAACTGGCGGAAGTTCTCGTACTCGG
GCTGGTCCTGGTACCCCGCCTTCTTCCACTGGGCAATCGTCTTGC
Found at i:73384 original size:22 final size:20
Alignment explanation
Indices: 73359--73416 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
73349 CCCACCACCG
*
73359 ATAGGCGAACTCCCCACTACAA
1 ATAGGCTAACTCCCCACT--AA
* *
73381 ATAGGCTAGCTCACCACTAA
1 ATAGGCTAACTCCCCACTAA
*
73401 ATAGGCTAATTCCCCA
1 ATAGGCTAACTCCCCA
73417 ACTCCAGTAC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 15 0.50
22 15 0.50
ACGTcount: A:0.34, C:0.33, G:0.14, T:0.19
Consensus pattern (20 bp):
ATAGGCTAACTCCCCACTAA
Left flanking sequence: Indices 72859 -- 73358
GCCTCCAGAATACCACGCGACCACCACCCGACCCCAAATGTCTTTTACTGTCGCCAAACTCGGTA
AACAAGCAATCACCCACACCCCCGGATGGATCCTTTTGGCCGAGCTCCTCTGGCGTCTCGTCCGC
GACTGGCCCTCGTTGACCCCGGCTCAGATCTTGCTCCGGCTGTTGTGGATCGCCGGTACCATTGT
TAGTGGGGTTATCCGCATGAGAATGTGTGACGTGCCCATCTACAACTCGTTGATCACCATTGCCA
ACACGTTGTTTCTGTTTAAGGAGAGCTTACCGCACGTGCTGCTCTCGGTGGGGATCTTTTTGGTG
GTGGCCCTTGACTTTTTGGGCCTTTGCTCGGAGGAAATCGACAACGAGGAGAACCCGTTGTTGCC
AGAGTAGTTTTGCAGCCAGTTACATGCAGGAGATGAATAAATGGAGTCACGTGATATGCCACAAC
GTAGAAATAGGCTAGCTCCCCACCAGATAGGCCTTCCCACCACCG
Right flanking sequence: Indices 73417 -- 73916
ACTCCAGTACCACCCCACAACCACGCTAGCCCCACTGTAGACCACCCCATCCCCACTGTAGACCA
CCCACCACGCCCAAACTACGTCCATTACCTCCCTTAATCTACACCCCTCCAATACCCCCCACTAC
CTTCCCCTACACCCATCATCCCACTATATTACATTCATTTTCCCCTATCTAGCTCGACCCCGACA
CCACCAACTTGCGCAAGTGGTCCATAAACACCTGCAACGACACGTCGTCGGTCAACACAATGGCG
CCGTTGTTGGTGGCAAACTCGTTCGAGTTGTAGGTGGTCGAAGGGTTAAGCTTCGACAACAAGAA
CCGCGCCTGCGACCCGCCCTCCTCGGTGACAATGTACCGCGGCAACGGGTACCGGTCGATCAAAA
GCTCCTTGGCCTCCTGCTTGGGCTCGTCCAACAACTGGCGGAAGTTCTCGTACTCGGGCTGGTCC
TGGTACCCCGCCTTCTTCCACTGGGCAATCGTCTTGCCGTGGAAA
Found at i:73460 original size:21 final size:21
Alignment explanation
Indices: 73444--73484 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
73434 CAACCACGCT
73444 AGCCCCACTGTAGACCACCCC
1 AGCCCCACTGTAGACCACCCC
*
73465 ATCCCCACTGTAGACCACCC
1 AGCCCCACTGTAGACCACCC
73485 ACCACGCCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.51, G:0.12, T:0.12
Consensus pattern (21 bp):
AGCCCCACTGTAGACCACCCC
Left flanking sequence: Indices 72944 -- 73443
CCCGGATGGATCCTTTTGGCCGAGCTCCTCTGGCGTCTCGTCCGCGACTGGCCCTCGTTGACCCC
GGCTCAGATCTTGCTCCGGCTGTTGTGGATCGCCGGTACCATTGTTAGTGGGGTTATCCGCATGA
GAATGTGTGACGTGCCCATCTACAACTCGTTGATCACCATTGCCAACACGTTGTTTCTGTTTAAG
GAGAGCTTACCGCACGTGCTGCTCTCGGTGGGGATCTTTTTGGTGGTGGCCCTTGACTTTTTGGG
CCTTTGCTCGGAGGAAATCGACAACGAGGAGAACCCGTTGTTGCCAGAGTAGTTTTGCAGCCAGT
TACATGCAGGAGATGAATAAATGGAGTCACGTGATATGCCACAACGTAGAAATAGGCTAGCTCCC
CACCAGATAGGCCTTCCCACCACCGATAGGCGAACTCCCCACTACAAATAGGCTAGCTCACCACT
AAATAGGCTAATTCCCCAACTCCAGTACCACCCCACAACCACGCT
Right flanking sequence: Indices 73485 -- 73984
ACCACGCCCAAACTACGTCCATTACCTCCCTTAATCTACACCCCTCCAATACCCCCCACTACCTT
CCCCTACACCCATCATCCCACTATATTACATTCATTTTCCCCTATCTAGCTCGACCCCGACACCA
CCAACTTGCGCAAGTGGTCCATAAACACCTGCAACGACACGTCGTCGGTCAACACAATGGCGCCG
TTGTTGGTGGCAAACTCGTTCGAGTTGTAGGTGGTCGAAGGGTTAAGCTTCGACAACAAGAACCG
CGCCTGCGACCCGCCCTCCTCGGTGACAATGTACCGCGGCAACGGGTACCGGTCGATCAAAAGCT
CCTTGGCCTCCTGCTTGGGCTCGTCCAACAACTGGCGGAAGTTCTCGTACTCGGGCTGGTCCTGG
TACCCCGCCTTCTTCCACTGGGCAATCGTCTTGCCGTGGAAAATCAAAATGTGGAAAAAGGTGTC
CAACAACAAGATCCGGTCGTCCTTGATCGACACCGAGTCCAAGAG
Found at i:76394 original size:21 final size:21
Alignment explanation
Indices: 76368--76415 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
76358 CGAGATGATA
*
76368 GAGAGTATCCCATTCAGGATT
1 GAGAGTACCCCATTCAGGATT
76389 GAGAGTACCCCATTCAGGATT
1 GAGAGTACCCCATTCAGGATT
76410 GAGAGT
1 GAGAGT
76416 GCCATTTAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (21 bp):
GAGAGTACCCCATTCAGGATT
Left flanking sequence: Indices 75868 -- 76367
GGCGAAAACATAAACGCGTTGGTGCGGGGCTCGCAATCGCCACGTCGCGCGTGGGGTACGGCGGG
ATTAGAGTGTGAAAGTGGGCGGTCAAGTGGGCGGTCTGGTGGGTGTTGCTGGGCTTGATCACATT
GTGGTTTTAGTTTAGCTGTTTGTAGTTTAGTTATTGGTAGATCAGTGGTTCTTTGAGCTAGAAAT
TTCCGAGCAACGCAGGGAATGTTGGGTGATTAAATAGTTGCGAATGAGGGGAAGATGGACCGGAG
GAGTAATTGAGTAGGGGTGGTTGCTCGTTGCAACGGAATGCGGGCCACGGTTCCCGTGTTCGCTC
TGTCCGCTTTGGGCGGGATACGAGTCGGGTATCGGTCCGTTACGAACTTTATTACGAAAGCATAG
GTCCGTCGCGACTGAAATTATTTAGGCACAGGTCAAACGCTACCGGTATTTTCAGCTTGGCTACC
AAACAGACGTGACCTAGACCACTGAAGAATTTAGACGAGATGATA
Right flanking sequence: Indices 76416 -- 76915
GCCATTTAGGTGTGAAGAGCAGTGGTTCATATTCGGTGTATTAAATGCCATTATGAGCGTCACTA
TCCTAGGACGCTATTGAATTAGATCACTCTAGATCACTCTTCAGAGTTTATTACAACATCACAAG
CACAAGCAAGCCTACAACCGCACCAACCCCTACGGTGGCGCCAGCGTTGTCGGACTTGGACGCGG
ATTGTGTCTTTTCAGCTTCTGTAGTCAGTTCTTGGGCAGTGGAGTTTGTGTTAGCTGAGTTTACC
AGCAGCTCAGCTTTGGAGGCGGACTCAGTGGTGGAGGAGGCAGTCAGCTCAGCTTTGGAGGAGGA
CTCAGTGGTGGAGGAGGCAGTCAGCTCAGCACCAGAGACGGAGTCCTGGTTGGAGGTCACCTCAG
CACTGGACTCCACGCTCTCAGTCTTTGACGCAGTGGACCCTTCATTCTCGCTGCTTGACTCGGTC
TGAGGCTCTGTGAAAGAGGCCTGTGAGACGTCAGACGGCGACAGA
Found at i:76725 original size:42 final size:42
Alignment explanation
Indices: 76678--76770 Score: 177
Period size: 42 Copynumber: 2.2 Consensus size: 42
76668 AGTTTACCAG
*
76678 CAGCTCAGCTTTGGAGGCGGACTCAGTGGTGGAGGAGGCAGT
1 CAGCTCAGCTTTGGAGGAGGACTCAGTGGTGGAGGAGGCAGT
76720 CAGCTCAGCTTTGGAGGAGGACTCAGTGGTGGAGGAGGCAGT
1 CAGCTCAGCTTTGGAGGAGGACTCAGTGGTGGAGGAGGCAGT
76762 CAGCTCAGC
1 CAGCTCAGC
76771 ACCAGAGACG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.20, C:0.20, G:0.41, T:0.18
Consensus pattern (42 bp):
CAGCTCAGCTTTGGAGGAGGACTCAGTGGTGGAGGAGGCAGT
Left flanking sequence: Indices 76178 -- 76677
TTCCCGTGTTCGCTCTGTCCGCTTTGGGCGGGATACGAGTCGGGTATCGGTCCGTTACGAACTTT
ATTACGAAAGCATAGGTCCGTCGCGACTGAAATTATTTAGGCACAGGTCAAACGCTACCGGTATT
TTCAGCTTGGCTACCAAACAGACGTGACCTAGACCACTGAAGAATTTAGACGAGATGATAGAGAG
TATCCCATTCAGGATTGAGAGTACCCCATTCAGGATTGAGAGTGCCATTTAGGTGTGAAGAGCAG
TGGTTCATATTCGGTGTATTAAATGCCATTATGAGCGTCACTATCCTAGGACGCTATTGAATTAG
ATCACTCTAGATCACTCTTCAGAGTTTATTACAACATCACAAGCACAAGCAAGCCTACAACCGCA
CCAACCCCTACGGTGGCGCCAGCGTTGTCGGACTTGGACGCGGATTGTGTCTTTTCAGCTTCTGT
AGTCAGTTCTTGGGCAGTGGAGTTTGTGTTAGCTGAGTTTACCAG
Right flanking sequence: Indices 76771 -- 77270
ACCAGAGACGGAGTCCTGGTTGGAGGTCACCTCAGCACTGGACTCCACGCTCTCAGTCTTTGACG
CAGTGGACCCTTCATTCTCGCTGCTTGACTCGGTCTGAGGCTCTGTGAAAGAGGCCTGTGAGACG
TCAGACGGCGACAGATTAGTCTCAGAAGTTCCATCCAGCTGCCCTTGCTGACTTGACACTGTCCC
GCCCAGCAGGGCGTTGGTCTTCAAAATCTCGGTCTGCTTGTCCAGCTCACCATGCCTTCTGGCGT
CCAGTTCCGGCGACAGGGTCTCAAGGGCATTTTTTCCCGCTTCAGAGTCGTCGCCTGTGTCGTCT
TCCTCATCGCCTATCTGGTAGATGCTGTAGGCACTTGGACCCCCACAACGGAGCAAGCCAAATCC
GGAGCAAGGCGTAACACACCTCCCCTCCTTACTTGTTGGCATTCGGTCTAAACAGAAACATTCAT
CACCCTGAACAGCGGTGTAAGTGCGGGCTTTACAGTGGTCAGCGC
Found at i:76734 original size:24 final size:23
Alignment explanation
Indices: 76706--76770 Score: 68
Period size: 18 Copynumber: 3.0 Consensus size: 23
76696 GGACTCAGTG
76706 GTGGAGGAGGCAGTCAGCTCAGC
1 GTGGAGGAGGCAGTCAGCTCAGC
* *
76729 TTTGGAGGAGG-ACTCAG-T--G-
1 -GTGGAGGAGGCAGTCAGCTCAGC
76748 GTGGAGGAGGCAGTCAGCTCAGC
1 GTGGAGGAGGCAGTCAGCTCAGC
76771 ACCAGAGACG
Statistics
Matches: 32, Mismatches: 4, Indels: 11
0.68 0.09 0.23
Matches are distributed among these distances:
18 9 0.28
19 5 0.16
20 2 0.06
22 2 0.06
23 5 0.16
24 9 0.28
ACGTcount: A:0.22, C:0.18, G:0.43, T:0.17
Consensus pattern (23 bp):
GTGGAGGAGGCAGTCAGCTCAGC
Left flanking sequence: Indices 76206 -- 76705
CGGGATACGAGTCGGGTATCGGTCCGTTACGAACTTTATTACGAAAGCATAGGTCCGTCGCGACT
GAAATTATTTAGGCACAGGTCAAACGCTACCGGTATTTTCAGCTTGGCTACCAAACAGACGTGAC
CTAGACCACTGAAGAATTTAGACGAGATGATAGAGAGTATCCCATTCAGGATTGAGAGTACCCCA
TTCAGGATTGAGAGTGCCATTTAGGTGTGAAGAGCAGTGGTTCATATTCGGTGTATTAAATGCCA
TTATGAGCGTCACTATCCTAGGACGCTATTGAATTAGATCACTCTAGATCACTCTTCAGAGTTTA
TTACAACATCACAAGCACAAGCAAGCCTACAACCGCACCAACCCCTACGGTGGCGCCAGCGTTGT
CGGACTTGGACGCGGATTGTGTCTTTTCAGCTTCTGTAGTCAGTTCTTGGGCAGTGGAGTTTGTG
TTAGCTGAGTTTACCAGCAGCTCAGCTTTGGAGGCGGACTCAGTG
Right flanking sequence: Indices 76771 -- 77270
ACCAGAGACGGAGTCCTGGTTGGAGGTCACCTCAGCACTGGACTCCACGCTCTCAGTCTTTGACG
CAGTGGACCCTTCATTCTCGCTGCTTGACTCGGTCTGAGGCTCTGTGAAAGAGGCCTGTGAGACG
TCAGACGGCGACAGATTAGTCTCAGAAGTTCCATCCAGCTGCCCTTGCTGACTTGACACTGTCCC
GCCCAGCAGGGCGTTGGTCTTCAAAATCTCGGTCTGCTTGTCCAGCTCACCATGCCTTCTGGCGT
CCAGTTCCGGCGACAGGGTCTCAAGGGCATTTTTTCCCGCTTCAGAGTCGTCGCCTGTGTCGTCT
TCCTCATCGCCTATCTGGTAGATGCTGTAGGCACTTGGACCCCCACAACGGAGCAAGCCAAATCC
GGAGCAAGGCGTAACACACCTCCCCTCCTTACTTGTTGGCATTCGGTCTAAACAGAAACATTCAT
CACCCTGAACAGCGGTGTAAGTGCGGGCTTTACAGTGGTCAGCGC
Found at i:76752 original size:18 final size:18
Alignment explanation
Indices: 76689--76757 Score: 57
Period size: 18 Copynumber: 3.5 Consensus size: 18
76679 AGCTCAGCTT
*
76689 TGGAGGCGGACTCAGTGG
1 TGGAGGAGGACTCAGTGG
* *
76707 TGGAGGAGGCAGTCAGCTCAGCTT
1 TGGAGGAGG-ACTCAG-T--G--G
76731 TGGAGGAGGACTCAGTGG
1 TGGAGGAGGACTCAGTGG
76749 TGGAGGAGG
1 TGGAGGAGG
76758 CAGTCAGCTC
Statistics
Matches: 40, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
18 17 0.43
19 5 0.12
20 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.20, C:0.14, G:0.48, T:0.17
Consensus pattern (18 bp):
TGGAGGAGGACTCAGTGG
Left flanking sequence: Indices 76189 -- 76688
GCTCTGTCCGCTTTGGGCGGGATACGAGTCGGGTATCGGTCCGTTACGAACTTTATTACGAAAGC
ATAGGTCCGTCGCGACTGAAATTATTTAGGCACAGGTCAAACGCTACCGGTATTTTCAGCTTGGC
TACCAAACAGACGTGACCTAGACCACTGAAGAATTTAGACGAGATGATAGAGAGTATCCCATTCA
GGATTGAGAGTACCCCATTCAGGATTGAGAGTGCCATTTAGGTGTGAAGAGCAGTGGTTCATATT
CGGTGTATTAAATGCCATTATGAGCGTCACTATCCTAGGACGCTATTGAATTAGATCACTCTAGA
TCACTCTTCAGAGTTTATTACAACATCACAAGCACAAGCAAGCCTACAACCGCACCAACCCCTAC
GGTGGCGCCAGCGTTGTCGGACTTGGACGCGGATTGTGTCTTTTCAGCTTCTGTAGTCAGTTCTT
GGGCAGTGGAGTTTGTGTTAGCTGAGTTTACCAGCAGCTCAGCTT
Right flanking sequence: Indices 76758 -- 77257
CAGTCAGCTCAGCACCAGAGACGGAGTCCTGGTTGGAGGTCACCTCAGCACTGGACTCCACGCTC
TCAGTCTTTGACGCAGTGGACCCTTCATTCTCGCTGCTTGACTCGGTCTGAGGCTCTGTGAAAGA
GGCCTGTGAGACGTCAGACGGCGACAGATTAGTCTCAGAAGTTCCATCCAGCTGCCCTTGCTGAC
TTGACACTGTCCCGCCCAGCAGGGCGTTGGTCTTCAAAATCTCGGTCTGCTTGTCCAGCTCACCA
TGCCTTCTGGCGTCCAGTTCCGGCGACAGGGTCTCAAGGGCATTTTTTCCCGCTTCAGAGTCGTC
GCCTGTGTCGTCTTCCTCATCGCCTATCTGGTAGATGCTGTAGGCACTTGGACCCCCACAACGGA
GCAAGCCAAATCCGGAGCAAGGCGTAACACACCTCCCCTCCTTACTTGTTGGCATTCGGTCTAAA
CAGAAACATTCATCACCCTGAACAGCGGTGTAAGTGCGGGCTTTA
Found at i:80510 original size:16 final size:16
Alignment explanation
Indices: 80485--80518 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80475 ATCTTCCGAG
* *
80485 TGATTTAGACCTTAGC
1 TGATTCAGACCTAAGC
80501 TGATTCAGACCTAAGC
1 TGATTCAGACCTAAGC
80517 TG
1 TG
80519 TTCGATTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (16 bp):
TGATTCAGACCTAAGC
Left flanking sequence: Indices 79985 -- 80484
TACGGCGGACACCCACAAGGAAGCTGTCGGCAATCCACCAGAATATCACGAGGGAGACAATGAGA
GTCCACCACATGATAAAAGATGGGCTCGCTGGGTGGTCTTATATCACCAGATCACGACGTGCACA
TAGGTCCGAATTATCAGGTGCATGCGCCCCTGGAAGTGTGTGGCAAATACGAACAACGACATGGT
GCGACAGATACTTGATTGAACACGTGTAATTTGACCAATTGAGCAGGGTGTTGCTGGGAGTAGTG
ATGGTTAGCGTTGTCAGTTTGGTTCAGGTAGACAATCAGGGCAGAATATTGACAGACACTCAACT
TCACCGGGTGTTGTCGTGCTTCTGCAGCTCACAACCTTCGCTTGTAGACGCGTTTATCCAACGGT
CATGCTTCCCATCGGATCTATTTGAAAGCAAATCAGTCATTTTGATAAGGGGCTTTGCTTGATGT
AAAAGGTTCTCTGGATCAATTCAAACAGTGCGAGAATCTTCCGAG
Right flanking sequence: Indices 80519 -- 81018
TTCGATTTTGACAACCTAAGCGAACTGTCCAGCCAGGGAGGGGGTGACGTTTTGCAGCCATTGGA
TGTAAACCAAAGAGGACAATCTTCAGATTGTAGAAACGATTGGGGAGTAGCGGAAAGCAGTTTCA
GAATCACCCATAGAATCCAAAGAATTTTATTCCTGAAACCAATGCCCATTTAAGATGATGAACAT
CGAACGAGAAACTACCGAAACGGTTACTAATACTTAGTAAGCACGCTTTCAGAGCACTTTCGATC
CATCTTTTGCAACTAGTCCGGAAAACACTGGCCTCTGGTAAATTATTACGTAAACTTTTATCACG
CCATGGCGTATTTAACCCTTGGGGCTCTCTCCCCTATCCATACGTTGCAATCTCACCATGTTTCT
ACAAGGTGTCTACTGGAACCCTGTCATACACAAAACCAAGCCCAGGCCACAAAGGCTTTGCAATT
GAGCGCGCCACAGTGAATTGATATATCCAACCAAGATATATGAGC
Found at i:83203 original size:60 final size:60
Alignment explanation
Indices: 83133--83264 Score: 183
Period size: 60 Copynumber: 2.2 Consensus size: 60
83123 TTCTTCTACA
* * * * *
83133 GCTGAACTGAGCTCAAACTATTCTGAGAGTATACTGACATCCACCGAGTCTTTATCGACG
1 GCTGAACTGAGCTCAAACTATTCTGAGACTATAATCACAACCACCGAGTCTTCATCGACG
* **
83193 GCTGAGCTGAGCTCAAACTATTCTGAGACTATAATCACAACCGTCGAGTCTTCATCGACG
1 GCTGAACTGAGCTCAAACTATTCTGAGACTATAATCACAACCACCGAGTCTTCATCGACG
*
83253 GCTGATCTGAGC
1 GCTGAACTGAGC
83265 CCGTATTTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (60 bp):
GCTGAACTGAGCTCAAACTATTCTGAGACTATAATCACAACCACCGAGTCTTCATCGACG
Left flanking sequence: Indices 82633 -- 83132
GCCCGGGTTCGACAGGAGAGATTTTAACGTCCTCTTGGGGATGGTCAAACAGTTATTACACTGTG
CGAGGTTTTGGTGAGGGAATGAAGATCGGCAATTCAATGAAGATCTTCAGTTTCTCGTATTCAGG
AAATATTCTCACTCTCAATCTTGACTACTTTGGATTTACTAATCAAAAGTTTGATATCGGTCCTG
GTTACGATCCCAATCGATTTGCGATTGTGACCAGATTATTCCTGTCCTTTGGGTTCCCGATCCGT
GATGCAATTGAGTACCATGGACCCGTCCCTTCAGGAGCTGCGACTGACCCAAAATGTGGTGCTTG
TACCTCAACGGCCGAGAAGCCAGAACCAACACTGTCTTCGCTGGAATCTTCATCTACGGCTGAAC
TGAGCTCTCTTTTTAGCCAAACAGCGGAGTCTACACTGTCGTCAACGGAGTTTGCAACCACAGCG
GAGTTCAGCTCAGTATATTCTGAGGTTACATCGTCTTCTTCTACA
Right flanking sequence: Indices 83265 -- 83764
CCGTATTTTTCTCATTCGGTCGAAACACACGATTCTGAGGAGTCATTGGTGGAGCTGATCCTGTT
TGACACGTCTGAATCAGCAAGTCTGGAGTTTTTAGGTGATGAAGCAGATCTGACAAGCAACAGTG
TCTCAGTGGTGGAGCTGACCTACGAATCATCAAACACTCAAACCACGAGCGTCCCATCCACTTCT
GGGGCCGAGGAGCTGTATACACCACTGGAAACTGATTCCCAACTGGACTCAGTAACTCTTCAACA
GTCTGAGGACACTGACTCTAACGGGTCGCTGGCCACTCTGTTGTCGAGCTACTTTGAATCAGTGG
AAAGTAGTTCGAGCGGGTCGTTGGTTACCACCAGTGGTGAACTGAGTGGTAACGTCCCATCCACT
TCTGGGGCCGAGAAGCTGTATACACCACTGGAAACTGATTCCCAGCTGGACTCAGTAACTCTTCA
ACAGTCTGAGGACACTGACTCTAACGGGTCGTTGGTCACTCTGTT
Found at i:83782 original size:198 final size:198
Alignment explanation
Indices: 83444--83837 Score: 698
Period size: 198 Copynumber: 2.0 Consensus size: 198
83434 AAACCACGAG
*
83444 CGTCCCATCCACTTCTGGGGCCGAGGAGCTGTATACACCACTGGAAACTGATTCCCAACTGGACT
1 CGTCCCATCCACTTCTGGGGCCGAGAAGCTGTATACACCACTGGAAACTGATTCCCAACTGGACT
83509 CAGTAACTCTTCAACAGTCTGAGGACACTGACTCTAACGGGTCGCTGGCCACTCTGTTGTCGAGC
66 CAGTAACTCTTCAACAGTCTGAGGACACTGACTCTAACGGGTCGCTGGCCACTCTGTTGTCGAGC
* ** *
83574 TACTTTGAATCAGTGGAAAGTAGTTCGAGCGGGTCGTTGGTTACCACCAGTGGTGAACTGAGTGG
131 TACTTTGAATCAGTGGAAAGTAGTTCGAGCGGGTCATTGACTACCACCAGTGGCGAACTGAGTGG
83639 TAA
196 TAA
*
83642 CGTCCCATCCACTTCTGGGGCCGAGAAGCTGTATACACCACTGGAAACTGATTCCCAGCTGGACT
1 CGTCCCATCCACTTCTGGGGCCGAGAAGCTGTATACACCACTGGAAACTGATTCCCAACTGGACT
* *
83707 CAGTAACTCTTCAACAGTCTGAGGACACTGACTCTAACGGGTCGTTGGTCACTCTGTTGTCGAGC
66 CAGTAACTCTTCAACAGTCTGAGGACACTGACTCTAACGGGTCGCTGGCCACTCTGTTGTCGAGC
* *
83772 TACTTTGAATCAGTTGAAAGTAGTTCGAGTGGGTCATTGACTACCACCAGTGGCGAACTGAGTGG
131 TACTTTGAATCAGTGGAAAGTAGTTCGAGCGGGTCATTGACTACCACCAGTGGCGAACTGAGTGG
83837 T
196 T
83838 GACGATAGTG
Statistics
Matches: 186, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
198 186 1.00
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.25
Consensus pattern (198 bp):
CGTCCCATCCACTTCTGGGGCCGAGAAGCTGTATACACCACTGGAAACTGATTCCCAACTGGACT
CAGTAACTCTTCAACAGTCTGAGGACACTGACTCTAACGGGTCGCTGGCCACTCTGTTGTCGAGC
TACTTTGAATCAGTGGAAAGTAGTTCGAGCGGGTCATTGACTACCACCAGTGGCGAACTGAGTGG
TAA
Left flanking sequence: Indices 82944 -- 83443
AAATGTGGTGCTTGTACCTCAACGGCCGAGAAGCCAGAACCAACACTGTCTTCGCTGGAATCTTC
ATCTACGGCTGAACTGAGCTCTCTTTTTAGCCAAACAGCGGAGTCTACACTGTCGTCAACGGAGT
TTGCAACCACAGCGGAGTTCAGCTCAGTATATTCTGAGGTTACATCGTCTTCTTCTACAGCTGAA
CTGAGCTCAAACTATTCTGAGAGTATACTGACATCCACCGAGTCTTTATCGACGGCTGAGCTGAG
CTCAAACTATTCTGAGACTATAATCACAACCGTCGAGTCTTCATCGACGGCTGATCTGAGCCCGT
ATTTTTCTCATTCGGTCGAAACACACGATTCTGAGGAGTCATTGGTGGAGCTGATCCTGTTTGAC
ACGTCTGAATCAGCAAGTCTGGAGTTTTTAGGTGATGAAGCAGATCTGACAAGCAACAGTGTCTC
AGTGGTGGAGCTGACCTACGAATCATCAAACACTCAAACCACGAG
Right flanking sequence: Indices 83838 -- 84337
GACGATAGTGACTCTAGTGGGTCAACCGCCACCCCCACTTCGGGTCAATCCTCGACTACCACCAA
TGGCGAACTGAGTGGTGACGATAGTGACTCTAATGGGACAACCACCCCCACTACGAGTCAATCTC
AATTGGCTGACACCGAAAGCACAACGCACTTGGTGACTGGATCCCAACTGACTACAAGCCACTCC
AGGTTGCTAGAAACTACCGACTCACATGAGACGCTTGCTACACTGCAGCTGTCGGACACTTCAAG
CTTTAGTTCGTTAATTGGCACTAGTACAGGCCTGACCTCCGATGGAGACATCACGGAATCAACTA
TCACTTCCCATGATCTGACCTCCATCATTTCTGGATTGTCTAAAACTGCCAGCTACGACGACTTT
TGGGACACCCATAGCTTGCCCGATCTAGTCGACGATTTTGAGATTGTGCCTGATGATTACTTCGA
GTCTCATGTAACGGCAACCTCGAGCAATGACCAACATTCCAAAAC
Found at i:83945 original size:81 final size:78
Alignment explanation
Indices: 83810--83965 Score: 240
Period size: 81 Copynumber: 2.0 Consensus size: 78
83800 GTGGGTCATT
* * *
83810 GACTACCACCAGTGGCGAACTGAGTGGTGACGATAGTGACTCTAGTGGGTCAACCGCCACCCCCA
1 GACTACCACCAATGGCGAACTGAGTGGTGACGATAGTGACTCTAATGGGACAA---CCACCCCCA
* *
83875 CTTCGGGTCAATCCTC
63 CTACGAGTCAATCCTC
83891 GACTACCACCAATGGCGAACTGAGTGGTGACGATAGTGACTCTAATGGGACAACCACCCCCACTA
1 GACTACCACCAATGGCGAACTGAGTGGTGACGATAGTGACTCTAATGGGACAACCACCCCCACTA
83956 CGAGTCAATC
66 CGAGTCAATC
83966 TCAATTGGCT
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
78 20 0.29
81 50 0.71
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (78 bp):
GACTACCACCAATGGCGAACTGAGTGGTGACGATAGTGACTCTAATGGGACAACCACCCCCACTA
CGAGTCAATCCTC
Left flanking sequence: Indices 83310 -- 83809
TTGGTGGAGCTGATCCTGTTTGACACGTCTGAATCAGCAAGTCTGGAGTTTTTAGGTGATGAAGC
AGATCTGACAAGCAACAGTGTCTCAGTGGTGGAGCTGACCTACGAATCATCAAACACTCAAACCA
CGAGCGTCCCATCCACTTCTGGGGCCGAGGAGCTGTATACACCACTGGAAACTGATTCCCAACTG
GACTCAGTAACTCTTCAACAGTCTGAGGACACTGACTCTAACGGGTCGCTGGCCACTCTGTTGTC
GAGCTACTTTGAATCAGTGGAAAGTAGTTCGAGCGGGTCGTTGGTTACCACCAGTGGTGAACTGA
GTGGTAACGTCCCATCCACTTCTGGGGCCGAGAAGCTGTATACACCACTGGAAACTGATTCCCAG
CTGGACTCAGTAACTCTTCAACAGTCTGAGGACACTGACTCTAACGGGTCGTTGGTCACTCTGTT
GTCGAGCTACTTTGAATCAGTTGAAAGTAGTTCGAGTGGGTCATT
Right flanking sequence: Indices 83966 -- 84465
TCAATTGGCTGACACCGAAAGCACAACGCACTTGGTGACTGGATCCCAACTGACTACAAGCCACT
CCAGGTTGCTAGAAACTACCGACTCACATGAGACGCTTGCTACACTGCAGCTGTCGGACACTTCA
AGCTTTAGTTCGTTAATTGGCACTAGTACAGGCCTGACCTCCGATGGAGACATCACGGAATCAAC
TATCACTTCCCATGATCTGACCTCCATCATTTCTGGATTGTCTAAAACTGCCAGCTACGACGACT
TTTGGGACACCCATAGCTTGCCCGATCTAGTCGACGATTTTGAGATTGTGCCTGATGATTACTTC
GAGTCTCATGTAACGGCAACCTCGAGCAATGACCAACATTCCAAAACTAGTGTTTCAGCCATTAC
ATCTTCTTCCCAAGACTCGATATCTCAGGCTTCAAACAACTCAGCTTCCTCTCAACTGTCTGTCA
CCTCCATCGATGATAATTCATGGGATTCATTGGACTCCACCGTCG
Found at i:85720 original size:39 final size:38
Alignment explanation
Indices: 85677--85852 Score: 124
Period size: 39 Copynumber: 4.5 Consensus size: 38
85667 TGAAACCGCT
85677 GGGTTTGGTGGAGCAGTGCCAGAGCCTTCACATTCAGAC
1 GGGTTTGGTGGAGC-GTGCCAGAGCCTTCACATTCAGAC
* * * *
85716 GGGTTCGGTGGAGCGCTGCCAGAGCCATCTGAGACT-AGA-
1 GGGTTTGGTGGAGCG-TGCCAGAGCC-T-TCACATTCAGAC
* ** * *
85755 GAGTTTAATGGAGCGTTGCCAGAGCCTTCACAGTCCGAC
1 GGGTTTGGTGGAGCG-TGCCAGAGCCTTCACATTCAGAC
* * * * *
85794 GGATTTGGTGGTGCAGTACCTGAGCCTTCACAATCCA-AC
1 GGGTTTGGTGGAGC-GTGCCAGAGCCTTCAC-ATTCAGAC
*
85833 GGATTTGGTGGAGCGGTGCC
1 GGGTTTGGTGGAGC-GTGCC
85853 TCAGCCATCT
Statistics
Matches: 104, Mismatches: 26, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
37 4 0.04
38 4 0.04
39 85 0.82
40 7 0.07
41 4 0.04
ACGTcount: A:0.20, C:0.23, G:0.34, T:0.23
Consensus pattern (38 bp):
GGGTTTGGTGGAGCGTGCCAGAGCCTTCACATTCAGAC
Left flanking sequence: Indices 85177 -- 85676
TGACCCTGACATCTAGTCACCTTCAAGAGACTACGAATAGTGGAACCGATGAATCGACATCAGAG
AGTTCAAACAGCCATTCTAGCGCTCTCAGCTCTGCTACCTATGATTCAACTGAGACAGGAACTTT
TGGTGGTTCGTATTCTCTGACCGCAGAGGATATGTCGGCTAGCGATCCTGAGCCGAGTGTCAGCT
CTCCCGGATATCTGTCGTCTCTGACGTCAGCACAGATTGACCCGTCTGGTACAAGTGCTCCTGAA
CCTCATCCTCTTTCGTCTGGGACCGACAGCTCAACCGACAGATCTCCAACTATATCCGAGTCTCC
GTTGCCTACTCTGACTTCTCATTACAGCTCTTTGCTCGAGACCAGCAGCAGTTTTAGAGGGTTTG
GCGGAGCAGTACCTGAGCCAGCTGAGTTGAAAGGGTTTGGTGGAGCGTTGTCAGAGCCTTCTCAA
TCCCATGGCTTCGGTAATACAGTGCCTGAGCCATCTGAAACCGCT
Right flanking sequence: Indices 85853 -- 85913
TCAGCCATCTGAGACTGGAGGGTTTGGAGGACCTGTGCCCGAGCCTTCACAATCCAACGGG
Found at i:85780 original size:117 final size:117
Alignment explanation
Indices: 85654--85877 Score: 254
Period size: 117 Copynumber: 1.9 Consensus size: 117
85644 GGTAATACAG
* ** * * *
85654 TGCCTGAGCCATCTGAAACCG-CTGGGTTTGGTGGAGCAGTGCCAGAGCCTTCAC-ATTCAGACG
1 TGCCAGAGCCATCACAAACCGAC-GGATTTGGTGGAGCAGTACCAGAGCCTTCACAATCCA-ACG
* *
85717 GGTTCGGTGGAGCGCTGCCAGAGCCATCTGAGACTAGAGAGTTTAATGGAGCGT
64 GATTCGGTGGAGCGCTGCCACAGCCATCTGAGACTAGAGAGTTTAATGGAGCGT
* ** * *
85771 TGCCAGAGCCTTCACAGTCCGACGGATTTGGTGGTGCAGTACCTGAGCCTTCACAATCCAACGGA
1 TGCCAGAGCCATCACAAACCGACGGATTTGGTGGAGCAGTACCAGAGCCTTCACAATCCAACGGA
* * * * *
85836 TTTGGTGGAGCGGTGCCTCAGCCATCTGAGACTGGAGGGTTT
66 TTCGGTGGAGCGCTGCCACAGCCATCTGAGACTAGAGAGTTT
85878 GGAGGACCTG
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
117 82 0.94
118 5 0.06
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.23
Consensus pattern (117 bp):
TGCCAGAGCCATCACAAACCGACGGATTTGGTGGAGCAGTACCAGAGCCTTCACAATCCAACGGA
TTCGGTGGAGCGCTGCCACAGCCATCTGAGACTAGAGAGTTTAATGGAGCGT
Left flanking sequence: Indices 85154 -- 85653
TTCGGATTCCCACAGTTCATTGATGACCCTGACATCTAGTCACCTTCAAGAGACTACGAATAGTG
GAACCGATGAATCGACATCAGAGAGTTCAAACAGCCATTCTAGCGCTCTCAGCTCTGCTACCTAT
GATTCAACTGAGACAGGAACTTTTGGTGGTTCGTATTCTCTGACCGCAGAGGATATGTCGGCTAG
CGATCCTGAGCCGAGTGTCAGCTCTCCCGGATATCTGTCGTCTCTGACGTCAGCACAGATTGACC
CGTCTGGTACAAGTGCTCCTGAACCTCATCCTCTTTCGTCTGGGACCGACAGCTCAACCGACAGA
TCTCCAACTATATCCGAGTCTCCGTTGCCTACTCTGACTTCTCATTACAGCTCTTTGCTCGAGAC
CAGCAGCAGTTTTAGAGGGTTTGGCGGAGCAGTACCTGAGCCAGCTGAGTTGAAAGGGTTTGGTG
GAGCGTTGTCAGAGCCTTCTCAATCCCATGGCTTCGGTAATACAG
Right flanking sequence: Indices 85878 -- 85913
GGAGGACCTGTGCCCGAGCCTTCACAATCCAACGGG
Found at i:85897 original size:117 final size:117
Alignment explanation
Indices: 85680--85912 Score: 274
Period size: 117 Copynumber: 2.0 Consensus size: 117
85670 AACCGCTGGG
* * * *
85680 TTTGGTGGAGCAGTGCCAGAGCCTTCACATTCAGACGGGTTCGGTGGAGCGCTGCCAGAGCCATC
1 TTTGGTGGAGCAGTACCAGAGCCTTCACATCCAGACGGATTCGGTGGAGCGCTGCCACAGCCATC
* * *
85745 TGAGACTAGAGAGTTTAATGGAGCGTTGCCAGAGCCTTCACAGTCCGACGGA
66 TGAGACTAGAGAGTTTAATGGACCGTTGCCAGAGCCTTCACAATCCAACGGA
* * * * *
85797 TTTGGTGGTGCAGTACCTGAGCCTTCACAATCCA-ACGGATTTGGTGGAGCGGTGCCTCAGCCAT
1 TTTGGTGGAGCAGTACCAGAGCCTTCAC-ATCCAGACGGATTCGGTGGAGCGCTGCCACAGCCAT
* * * *
85861 CTGAGACTGGAGGGTTTGGA-GGACC-TGTGCCCGAGCCTTCACAATCCAACGG
65 CTGAGACTAGAGAGTTT-AATGGACCGT-TGCCAGAGCCTTCACAATCCAACGG
85913 G
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
116 1 0.01
117 91 0.94
118 5 0.05
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.22
Consensus pattern (117 bp):
TTTGGTGGAGCAGTACCAGAGCCTTCACATCCAGACGGATTCGGTGGAGCGCTGCCACAGCCATC
TGAGACTAGAGAGTTTAATGGACCGTTGCCAGAGCCTTCACAATCCAACGGA
Left flanking sequence: Indices 85180 -- 85679
CCCTGACATCTAGTCACCTTCAAGAGACTACGAATAGTGGAACCGATGAATCGACATCAGAGAGT
TCAAACAGCCATTCTAGCGCTCTCAGCTCTGCTACCTATGATTCAACTGAGACAGGAACTTTTGG
TGGTTCGTATTCTCTGACCGCAGAGGATATGTCGGCTAGCGATCCTGAGCCGAGTGTCAGCTCTC
CCGGATATCTGTCGTCTCTGACGTCAGCACAGATTGACCCGTCTGGTACAAGTGCTCCTGAACCT
CATCCTCTTTCGTCTGGGACCGACAGCTCAACCGACAGATCTCCAACTATATCCGAGTCTCCGTT
GCCTACTCTGACTTCTCATTACAGCTCTTTGCTCGAGACCAGCAGCAGTTTTAGAGGGTTTGGCG
GAGCAGTACCTGAGCCAGCTGAGTTGAAAGGGTTTGGTGGAGCGTTGTCAGAGCCTTCTCAATCC
CATGGCTTCGGTAATACAGTGCCTGAGCCATCTGAAACCGCTGGG
Right flanking sequence: Indices 85913 -- 85913
G
Done.