Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold81
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 88812
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Found at i:669 original size:12 final size:12
Alignment explanation
Indices: 651--693 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
641 GTTTACTTCC
*
651 ATTTCCTTGCTT
1 ATTTCCTTACTT
* *
663 CTTTCCTTACTA
1 ATTTCCTTACTT
675 ATTTCCTTACTT
1 ATTTCCTTACTT
687 ATTTCCT
1 ATTTCCT
694 CGAAGGTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.14, C:0.28, G:0.02, T:0.56
Consensus pattern (12 bp):
ATTTCCTTACTT
Left flanking sequence: Indices 151 -- 650
CGGTAGGCTAATCTCCGGACCTTCGGGGGGATGAAGGTATATCCGAGACATAGTTCCGAGTACAT
TATAAATAGCGCAAGGGGTTCACGCTGCCGTTGTCTGCCACTAGCCTAACGCAGACATTAGTATG
AGATGAGGAAGAAAGCGTTTTTGAACGATGCACAGTAAGCGGGGATTAACATGCGGTGGTGGCAG
GGGTGTGTGGTGAAATTTGTGAAAACTATGAAACTGAGGTGTAGTAAATGCTGCTGGTGAGGGAT
TTTGATGAGTCCAACGGAAGTACAGCACCGCTGACAGAGAGGCGGGGTGGTTGGTGTTCGGAAGC
CCCGGGACAATCAAAACACTACTTGATTACATAATGATGCCCTGCTTATGTGGCTGATCTGTGAT
TGCATACATTGGCTGGATAAGGTATGCTAACAAACGGTTTGAGTCTAAAAGCTAAACGGTGCCTT
TGAAGTGTTCAGTTCTTATTGGAAATAATGTCTTTGTTTACTTCC
Right flanking sequence: Indices 694 -- 1193
CGAAGGTTAACTCTCTCGAATGCTAACTGCTGTTCTTCCAATTTTTCACCAATTTTCGATAAAAT
TTCACAATCTTGATCTACTCCACAATTCCCTACACTCGTCCTCAAACCAATCAAAACACCACAAA
ACACCATTAAAAACTACACTAAAACACACCCTAACACCGCATTCACTCAAACTTTTTATTTTTTA
TAGTATGAATCTATTGGTTCACATATGATAAATGACGTATTTACATTGGCCGGATGATGAAGCCA
ACTAACTGGGGGACGAAGTACGCTTACTTCTTCTTGTTGGGGGGGTCAAATCTGAACTTTCTGTT
CTTGATGGGTTGCCACTTGAACTTCTTGACGTAGATCGAGATCAAGTAGAGGGACGACACCACAA
TGAGCGCCTTCAAACCCCACTTCTTACGCTCGTCGTGCTCGGGCTCGGCGGCCCAGTTGAGGAAA
GTGGTGACATCCTTGGCCATCTGCGAGGTGGTGGCAGGGGTGCCG
Found at i:4237 original size:20 final size:21
Alignment explanation
Indices: 4206--4274 Score: 81
Period size: 21 Copynumber: 3.3 Consensus size: 21
4196 ACCACTCTTC
4206 CTCTGTTT-AATCCATAC-CCT
1 CTCT-TTTCAATCCATACTCCT
*
4226 CTCTTTTCAATCCATACTCAT
1 CTCTTTTCAATCCATACTCCT
4247 CT-TCTTTCAATCCATACTCCT
1 CTCT-TTTCAATCCATACTCCT
4268 CTTCTTT
1 C-TCTTT
4275 CCGAATATTC
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
19 3 0.07
20 14 0.33
21 21 0.50
22 3 0.07
23 1 0.02
ACGTcount: A:0.19, C:0.35, G:0.01, T:0.45
Consensus pattern (21 bp):
CTCTTTTCAATCCATACTCCT
Left flanking sequence: Indices 3706 -- 4205
GTCTTCAACGTGTCGTACGCCACGTTGCGGTACGGGCGGAGCCCGCCCTCGGTGTCGATGCGTTT
CTGGATCTGCTCGAGGAGCTGTGCCGGGGTGGTCTCCTTCAAGTTGATTCGGGGCACCACAAGGT
TCTTGACATTGCGGTAGGGGAACGACTTGATGATGCGGACAGTGATCAACGCGTCGGTGGCGGGG
CGGGTGTGGGTGGTTAACGGCTCGGACATGGTGATGGCTGCGAAATCGTATGAAAAAGATGTAAA
GCGTGCGAAAGTGGAAGTGGGGGTGAGATAATGTTTACGGAGACTGTGATTCGTGGTGGGTGTAT
GGTGTGTTGTATGGTGAGCGAGGCAGTCGAATAGGTGATTTAAAGTGGGTATAATGGAGATATCA
TGGGTCGATGTACCACATCGTATATATGCGCTAAGTGAAATAATTCACAGTATGGATGGAAAACA
TTGGTACATATTATCTAGCAAACTTGCTGACAACAACCACTCTTC
Right flanking sequence: Indices 4275 -- 4774
CCGAATATTCGTGAGGTTCACCATCAAAGAATCCACAAACCTTAGTATTCAGACTACTGAGTCCA
CTAATCACACCCACCTACCTTTCAAACTTTCCTAATGTTTATTCATGCTACAACTTCGTCCCCTT
GTCGCCCTCGATCGACTCCATCGCAAGCTGCGACAAGTACGGGTACAACAGGGCAAACCCAGAGG
CGTTGGCCAGCGACGCCACCCCCTTCTTCACCCGCATGGCAATACCCTGGGAAATGACACACAAC
CGCAACAACCCAAACACATCGCCCACAACCCGCAAGTCGAGCGGGTTGTTCTTGGGGTCAGCGGG
GTCCCACAGCCCTTCGTACTTGGACATGTACAACTTCAACACCTTGATCACCTGTGCCTGCGACT
CTGGGTTTTCGCGGCCCATGTCGGTCTTGTACGGCTTGTACAACAAGTTGACCAACTGGTTGGGC
AACACGTACGGCTGCAAAAAGTTGGCCAAGTCGAACTGCGGGTGG
Found at i:4256 original size:21 final size:21
Alignment explanation
Indices: 4214--4275 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
4204 TCCTCTGTTT
4214 AATCCATAC-CCTC-TCTTTTC
1 AATCCATACTCCTCTTC-TTTC
*
4234 AATCCATACTCATCTTCTTTC
1 AATCCATACTCCTCTTCTTTC
4255 AATCCATACTCCTCTTCTTTC
1 AATCCATACTCCTCTTCTTTC
4276 CGAATATTCG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 9 0.24
21 27 0.71
22 2 0.05
ACGTcount: A:0.21, C:0.37, G:0.00, T:0.42
Consensus pattern (21 bp):
AATCCATACTCCTCTTCTTTC
Left flanking sequence: Indices 3714 -- 4213
CGTGTCGTACGCCACGTTGCGGTACGGGCGGAGCCCGCCCTCGGTGTCGATGCGTTTCTGGATCT
GCTCGAGGAGCTGTGCCGGGGTGGTCTCCTTCAAGTTGATTCGGGGCACCACAAGGTTCTTGACA
TTGCGGTAGGGGAACGACTTGATGATGCGGACAGTGATCAACGCGTCGGTGGCGGGGCGGGTGTG
GGTGGTTAACGGCTCGGACATGGTGATGGCTGCGAAATCGTATGAAAAAGATGTAAAGCGTGCGA
AAGTGGAAGTGGGGGTGAGATAATGTTTACGGAGACTGTGATTCGTGGTGGGTGTATGGTGTGTT
GTATGGTGAGCGAGGCAGTCGAATAGGTGATTTAAAGTGGGTATAATGGAGATATCATGGGTCGA
TGTACCACATCGTATATATGCGCTAAGTGAAATAATTCACAGTATGGATGGAAAACATTGGTACA
TATTATCTAGCAAACTTGCTGACAACAACCACTCTTCCTCTGTTT
Right flanking sequence: Indices 4276 -- 4775
CGAATATTCGTGAGGTTCACCATCAAAGAATCCACAAACCTTAGTATTCAGACTACTGAGTCCAC
TAATCACACCCACCTACCTTTCAAACTTTCCTAATGTTTATTCATGCTACAACTTCGTCCCCTTG
TCGCCCTCGATCGACTCCATCGCAAGCTGCGACAAGTACGGGTACAACAGGGCAAACCCAGAGGC
GTTGGCCAGCGACGCCACCCCCTTCTTCACCCGCATGGCAATACCCTGGGAAATGACACACAACC
GCAACAACCCAAACACATCGCCCACAACCCGCAAGTCGAGCGGGTTGTTCTTGGGGTCAGCGGGG
TCCCACAGCCCTTCGTACTTGGACATGTACAACTTCAACACCTTGATCACCTGTGCCTGCGACTC
TGGGTTTTCGCGGCCCATGTCGGTCTTGTACGGCTTGTACAACAAGTTGACCAACTGGTTGGGCA
ACACGTACGGCTGCAAAAAGTTGGCCAAGTCGAACTGCGGGTGGC
Found at i:13484 original size:19 final size:19
Alignment explanation
Indices: 13460--13505 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
13450 TGTATATTCG
*
13460 AGGGTTGTAAATCGTTGTA
1 AGGGTTATAAATCGTTGTA
***
13479 AGGGTTATTCTTCGTTGTA
1 AGGGTTATAAATCGTTGTA
13498 AGGGTTAT
1 AGGGTTAT
13506 TTTTTCATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.22, C:0.07, G:0.30, T:0.41
Consensus pattern (19 bp):
AGGGTTATAAATCGTTGTA
Left flanking sequence: Indices 12960 -- 13459
CTCTCGCGGGACTACCCGTCGGTGGACGGGGTGCGTGCGGTGAGCGCGGTGGTGCGGCCGTTTGT
CGTGCTGTCGCCGGGTCTTCCCGTGACCACCGAGTTTGACTTGCCGGGCTGCAAGTACTTGCTCA
CGGTGCAGGTGGATTTTGAGGACGAGAAGCTCAAGACCACGCCCACGATTATATTCTTGCCCCGG
TGGCACTTCCCCTTTGTCAACCTGGGGGACATATACATTTCTGGTGGGCACGTCAAGTACCACCA
GCGGCTCGAGTACCTTGAGTGGTACCACGAGCGCGAGGAGGGAGAAGGCGATGCGAAGACGACGA
CCGAGGCGTCGATCATGATCCGCAACTATCTGGGCCCGATCACCGAGGCCGCACCCGACGGGAAG
AACTACTGCCCGATCGCTTAGACTAGATGAGTTAATGAAGGTAATGATTAGGGGAAGTATGAGGA
GTAGGGTTTCGAACAAAGGGGATGGGGGTCAGTGTTGTATATTCG
Right flanking sequence: Indices 13506 -- 14005
TTTTTCATTAAAAGGTTTGACTTTCGTTGTAAGGGTTGTATTATCATTGTAAGGATTGTATTTTC
GTTATAACCGTTGTGATTCGTTGTAATTCCATTGGTCTCTCCTGAGAGTTTGCTCATACCATTAT
AGACCGCAGGAATGAATCGGTCGTCTCTTTCACATGAATTCACTCCAATAGAATACGACTTGGTA
GTTAGCAAATGAACTGTCCACCTCACTTTCACATGATCTAACCGTCTATCTGACCTTCTCAAATG
ACACATGTCTGAGTTCTATCCGATCAGGTGGTCTGAATTCCAGGAACTCAAATCGCTCGCCGCCT
ACGAGCACCTGGTTCAAGGGCCACCTGTCACATACCCCTAAACCACCACACCCCATTACTTCTCT
ATGGTCGTCTATCATCGTTACATAAATACTAAAGCCAAGCAGCCCTAGAGTGCAAACAGCCTAAA
GAGCTACAGCCCTCAAGAGTGCAAGCAGCCTAAAGAGCTGCAAGC
Found at i:13990 original size:34 final size:32
Alignment explanation
Indices: 13935--13999 Score: 103
Period size: 34 Copynumber: 2.0 Consensus size: 32
13925 TAAAGCCAAG
13935 CAGCCCTAGAGTGCAAACAGCCTAAAGAGCTA
1 CAGCCCTAGAGTGCAAACAGCCTAAAGAGCTA
*
13967 CAGCCCTCAAGAGTGCAAGCAGCCTAAAGAGCT
1 CAGCCCT--AGAGTGCAAACAGCCTAAAGAGCT
14000 GCAAGCTCGG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 7 0.23
34 23 0.77
ACGTcount: A:0.35, C:0.29, G:0.23, T:0.12
Consensus pattern (32 bp):
CAGCCCTAGAGTGCAAACAGCCTAAAGAGCTA
Left flanking sequence: Indices 13435 -- 13934
GATGGGGGTCAGTGTTGTATATTCGAGGGTTGTAAATCGTTGTAAGGGTTATTCTTCGTTGTAAG
GGTTATTTTTTCATTAAAAGGTTTGACTTTCGTTGTAAGGGTTGTATTATCATTGTAAGGATTGT
ATTTTCGTTATAACCGTTGTGATTCGTTGTAATTCCATTGGTCTCTCCTGAGAGTTTGCTCATAC
CATTATAGACCGCAGGAATGAATCGGTCGTCTCTTTCACATGAATTCACTCCAATAGAATACGAC
TTGGTAGTTAGCAAATGAACTGTCCACCTCACTTTCACATGATCTAACCGTCTATCTGACCTTCT
CAAATGACACATGTCTGAGTTCTATCCGATCAGGTGGTCTGAATTCCAGGAACTCAAATCGCTCG
CCGCCTACGAGCACCTGGTTCAAGGGCCACCTGTCACATACCCCTAAACCACCACACCCCATTAC
TTCTCTATGGTCGTCTATCATCGTTACATAAATACTAAAGCCAAG
Right flanking sequence: Indices 14000 -- 14499
GCAAGCTCGGCCACAAACCGCGGGGTGTTCTCAATGTACTCGGTGGGCAAGTCGTACTCCTCACC
GGAGTCCACCATCACACCAACCACATGGGCTCCCAGGGCCAACACGTGGCGCATCTTGGCAAGCT
TCAGCTCGTACTCGGCGTTACCCAACTGGCCCACGTCTACCATCACCGGTCGCAGCCCGGCCTTG
GCGAGCACAGCGTCGATTTGCGCCAAACAAAGGTGCTCGATGTTGGCCACAATGAACGTCTCGTC
GTTTCCGGAGGTGCCCAACACCGCCACCTGCCCTCTCTTGGTGATATTCAAAAAGTGGTGCGGGT
TGTGAGCGGCCTGCATCAGGTCCAAGCACCCCTGGAGCTTGTGGGTGTAGGTGATCTCCAGGTAG
GGGGCGTCTCCGTCGTGGCACGCAAATCCCACGGGGTACGAGATGCCCAGCACGATCTCGCGGTG
CAACTGCAGCTCCGCCAACAGCGACAGCACCGTCGACAGGGTGAA
Found at i:14002 original size:19 final size:18
Alignment explanation
Indices: 13942--14005 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
13932 AAGCAGCCCT
*
13942 AGAGTGCAAACAGCCTAA
1 AGAGTGCAAGCAGCCTAA
* *
13960 AGA--GCTA-CAGCCCTCA
1 AGAGTGCAAGCAG-CCTAA
13976 AGAGTGCAAGCAGCCTAA
1 AGAGTGCAAGCAGCCTAA
13994 AGAGCTGCAAGC
1 AGAG-TGCAAGC
14006 TCGGCCACAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
15 3 0.08
16 10 0.27
18 14 0.38
19 10 0.27
ACGTcount: A:0.38, C:0.27, G:0.25, T:0.11
Consensus pattern (18 bp):
AGAGTGCAAGCAGCCTAA
Left flanking sequence: Indices 13442 -- 13941
GTCAGTGTTGTATATTCGAGGGTTGTAAATCGTTGTAAGGGTTATTCTTCGTTGTAAGGGTTATT
TTTTCATTAAAAGGTTTGACTTTCGTTGTAAGGGTTGTATTATCATTGTAAGGATTGTATTTTCG
TTATAACCGTTGTGATTCGTTGTAATTCCATTGGTCTCTCCTGAGAGTTTGCTCATACCATTATA
GACCGCAGGAATGAATCGGTCGTCTCTTTCACATGAATTCACTCCAATAGAATACGACTTGGTAG
TTAGCAAATGAACTGTCCACCTCACTTTCACATGATCTAACCGTCTATCTGACCTTCTCAAATGA
CACATGTCTGAGTTCTATCCGATCAGGTGGTCTGAATTCCAGGAACTCAAATCGCTCGCCGCCTA
CGAGCACCTGGTTCAAGGGCCACCTGTCACATACCCCTAAACCACCACACCCCATTACTTCTCTA
TGGTCGTCTATCATCGTTACATAAATACTAAAGCCAAGCAGCCCT
Right flanking sequence: Indices 14006 -- 14505
TCGGCCACAAACCGCGGGGTGTTCTCAATGTACTCGGTGGGCAAGTCGTACTCCTCACCGGAGTC
CACCATCACACCAACCACATGGGCTCCCAGGGCCAACACGTGGCGCATCTTGGCAAGCTTCAGCT
CGTACTCGGCGTTACCCAACTGGCCCACGTCTACCATCACCGGTCGCAGCCCGGCCTTGGCGAGC
ACAGCGTCGATTTGCGCCAAACAAAGGTGCTCGATGTTGGCCACAATGAACGTCTCGTCGTTTCC
GGAGGTGCCCAACACCGCCACCTGCCCTCTCTTGGTGATATTCAAAAAGTGGTGCGGGTTGTGAG
CGGCCTGCATCAGGTCCAAGCACCCCTGGAGCTTGTGGGTGTAGGTGATCTCCAGGTAGGGGGCG
TCTCCGTCGTGGCACGCAAATCCCACGGGGTACGAGATGCCCAGCACGATCTCGCGGTGCAACTG
CAGCTCCGCCAACAGCGACAGCACCGTCGACAGGGTGAAAATGTC
Found at i:16764 original size:16 final size:16
Alignment explanation
Indices: 16743--16786 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
16733 CAACCAGCAG
16743 CCACAGAGCCCAACAC
1 CCACAGAGCCCAACAC
16759 CCACAGAGCCCAACAC
1 CCACAGAGCCCAACAC
16775 CCACAGAGCCCA
1 CCACAGAGCCCA
16787 CAGACAGTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.36, C:0.50, G:0.14, T:0.00
Consensus pattern (16 bp):
CCACAGAGCCCAACAC
Left flanking sequence: Indices 16243 -- 16742
TCGATGCTGGTGACGTGGTCCTGGGCGTACACCAGAGGGTTGTCGTAGGAGAGGGACGACTTGCG
GGTGCGGATCTCTAGCACCAGGAGCTTGAGGGTCAGGAGAACGCCGACGGCGAGGATGCCTGCGA
CAATGGCCAACGGCGAGATCATTGGGGGGCTGGTGGCTACGGGGGTTTATATAGAGGGGATGTGG
AGAGAAGCAGGGCGTAGCACGGCGACGTGAGGACGTAGCAGAAGGTGGTTAGGTCTGGCGTGGCT
AGGCTCGGGACGTTGACGGTTCGTTGTGCTTGTGTAATGGCTACGCTCGAGACTTAGTTGGTTGT
TGTACTTATGTTGGTAGACGTGGGTGCCAGTAGTAGAAGCTACTTCCGTAACAATTGTTTTACGG
TACATGTGACAAGTATGGTCCACTGCCAAGCCAATTGAATGCAATCGTAAATTGTCTATGTGACA
AATGCCTATGGTAGGTTACTTCCGTTAGACAACACCAACCAGCAG
Right flanking sequence: Indices 16787 -- 17286
CAGACAGTCTTAACAAACAAATAACCCTGTTTCTTTTCCCACCTACATTCCCTCACATACCCAAC
CACTTTTGTCGTACTATATTCCTCGTAAATGATCGAACACGTCCACCAACTACACCCACCACCAC
GCCCAAAACAACGCCAAACCTAGCCAGCGTAGCCATCCACTTCTCCCCAACCACATCCACACTGC
CTCCAGCTCCCGACCACCACCCCCACCGGCCCCACCACCATCGCCGCCTCGCCACTAAGCCGCAC
CTTCGCACCAGAAAACGAATTTCTCCCACACCCAACCCAGATCATGTCGTCGTTCCCCGTGGCTA
GCGACTTGGCAGCGACCTGGACGTTCATCCAACCCGGACTCGAGCACATTCTCGGGTCCCAGGGC
GACCAGGGCGTCACCGCCAACATGTACATGAATTGCTACACCGCCGTCTACAACTACTGTGTCAA
CAAGTCGCGCACGGGCCAGCTGCCAGCAGTGGGCCTGAGCGGCGA
Found at i:16786 original size:9 final size:9
Alignment explanation
Indices: 16743--16790 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
16733 CAACCAGCAG
16743 CCACAGAGC
1 CCACAGAGC
*
16752 CCA-ACA-C
1 CCACAGAGC
16759 CCACAGAGC
1 CCACAGAGC
*
16768 CCA-ACA-C
1 CCACAGAGC
16775 CCACAGAGC
1 CCACAGAGC
16784 CCACAGA
1 CCACAGA
16791 CAGTCTTAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
7 8 0.26
8 8 0.26
9 15 0.48
ACGTcount: A:0.38, C:0.48, G:0.15, T:0.00
Consensus pattern (9 bp):
CCACAGAGC
Left flanking sequence: Indices 16243 -- 16742
TCGATGCTGGTGACGTGGTCCTGGGCGTACACCAGAGGGTTGTCGTAGGAGAGGGACGACTTGCG
GGTGCGGATCTCTAGCACCAGGAGCTTGAGGGTCAGGAGAACGCCGACGGCGAGGATGCCTGCGA
CAATGGCCAACGGCGAGATCATTGGGGGGCTGGTGGCTACGGGGGTTTATATAGAGGGGATGTGG
AGAGAAGCAGGGCGTAGCACGGCGACGTGAGGACGTAGCAGAAGGTGGTTAGGTCTGGCGTGGCT
AGGCTCGGGACGTTGACGGTTCGTTGTGCTTGTGTAATGGCTACGCTCGAGACTTAGTTGGTTGT
TGTACTTATGTTGGTAGACGTGGGTGCCAGTAGTAGAAGCTACTTCCGTAACAATTGTTTTACGG
TACATGTGACAAGTATGGTCCACTGCCAAGCCAATTGAATGCAATCGTAAATTGTCTATGTGACA
AATGCCTATGGTAGGTTACTTCCGTTAGACAACACCAACCAGCAG
Right flanking sequence: Indices 16791 -- 17290
CAGTCTTAACAAACAAATAACCCTGTTTCTTTTCCCACCTACATTCCCTCACATACCCAACCACT
TTTGTCGTACTATATTCCTCGTAAATGATCGAACACGTCCACCAACTACACCCACCACCACGCCC
AAAACAACGCCAAACCTAGCCAGCGTAGCCATCCACTTCTCCCCAACCACATCCACACTGCCTCC
AGCTCCCGACCACCACCCCCACCGGCCCCACCACCATCGCCGCCTCGCCACTAAGCCGCACCTTC
GCACCAGAAAACGAATTTCTCCCACACCCAACCCAGATCATGTCGTCGTTCCCCGTGGCTAGCGA
CTTGGCAGCGACCTGGACGTTCATCCAACCCGGACTCGAGCACATTCTCGGGTCCCAGGGCGACC
AGGGCGTCACCGCCAACATGTACATGAATTGCTACACCGCCGTCTACAACTACTGTGTCAACAAG
TCGCGCACGGGCCAGCTGCCAGCAGTGGGCCTGAGCGGCGACAAC
Found at i:24469 original size:14 final size:14
Alignment explanation
Indices: 24426--24470 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
24416 GTCAAACTAG
*
24426 GTTCGAGTTAAGAA
1 GTTCGAGCTAAGAA
* *
24440 GCTCGAGCTATGAA
1 GTTCGAGCTAAGAA
*
24454 GTTCGAGCTACGAA
1 GTTCGAGCTAAGAA
24468 GTT
1 GTT
24471 AGTTGAAGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (14 bp):
GTTCGAGCTAAGAA
Left flanking sequence: Indices 23926 -- 24425
GACTCTGGGCCTATTATGCCGATTTCATGGTTTTCCCAAATGAAAAGTCTTCGCCATCTCATGAC
AGGATATGCACGAATGTACTATTCGTGCTTCGACCGAGGCAGCCAACAATGTTTCAAAAAATCAC
TCGAATCGAAACCCAACAACTTGTGCATGGCGTGGCTTGACGACACACCGTTCGACATGGTAAAG
AAAAAGGCACTTGTCGAGGTTGAGGAAACGCACCAGGAGCCTAAAGTGCTGACGGTTGCAAGCGA
GCAGCTGTCGAGAAAGCGTAAGAACAAGGGCTACTGGCAGTCGAGAAAGAAGGCCAAAAAGCAAG
GCGTCAGAGGTTGAGGCTGTGACCCAGGAAGGTAGTAATCCCAAGGTTCTTACTGGATTGAACCG
TAAAAATTTCATCTACAAAGGTTATATTCGTCTTGGCTCTCTTCGCTAGATGTAGAATCTCTCAT
TGCTGTATTTAATTCTGGTCTGAGAACACGCAGTAGTCAAACTAG
Right flanking sequence: Indices 24471 -- 24970
AGTTGAAGGGTGTATCCTTCTAGGCCCTTCCGAACCACTACACACCTCTATTACATGCGCATTGC
TATTAATCACTCGTCGTCCTTGATATCGATGTTGTCGATCGACTCCATGAGCGCCGCCAACTTCT
TGGCCGCGGCCTGGTGGAAGTCCACCTGCGCCTGCACCGCCTGCTTCAACAAGTTGACGTTCTGC
AGCGGCTGCAACAACTGCTTCATTTCCACCACCGCCACCTCGGTCGCCAGCACCAAGTTGTCCTC
CTTGGCAATCAACTCCTCGTTTTCCTCGTCGTCCTTGTGCACCGCTCTCAACGCATCAAACTCGG
CCCGGGCCGCGTACACCTTTTTGCGCAACTCGTTGACGCGGATGAACTCGTCGTTGAGCACCAGC
ACCAACTTGGCGTTGACGGCGGTGATCAGCTTGTCCTGGTCCAACCGCGCGAGCGCCACCTCGGT
GTACAGCGACGCCATCTGCAACAACACAAGCGCGATCGGGGAGTC
Found at i:29298 original size:22 final size:22
Alignment explanation
Indices: 29272--29326 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
29262 TATGAAAATG
*
29272 GAAAGAGAGGGTGGAA-A-GGGT
1 GAAAGA-AGGGTGAAAGAGGGGT
29293 AGAAAGAAGGGTGAAAGAGGGGT
1 -GAAAGAAGGGTGAAAGAGGGGT
29316 GAAAGAAGGGT
1 GAAAGAAGGGT
29327 TTATGTGGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 8 0.27
22 18 0.60
23 4 0.13
ACGTcount: A:0.42, C:0.00, G:0.49, T:0.09
Consensus pattern (22 bp):
GAAAGAAGGGTGAAAGAGGGGT
Left flanking sequence: Indices 28772 -- 29271
GAGCACACTTGCCACACTGGGGAAGCGTTTCATCGCACCGGATCTTCTTCCGTTTGCAGTTGGCA
CACCCGAGCTTCAGGTTGGTGTGCTTGCGCCTTGTGCTGGCGGGGTTGGGCTGCGGCTTTGCCAT
TCATAACACGGCGTGCAACACGAACAGGGCGCAGTCGGTGGCGATCAGCACGATAGGGTGGTAAA
AGTCTTTTCTCACCCACCTTTTAAACTGGCTCAGGTGCGCGCGGGGAGGGTTTAACCCGCTTAAT
AATATCGGTAGGTACTGCACTGGTGCGCCCAGCGCATGTGGAGGGTAAAAATAATGGGGAAGGAC
GGTGGTCAGGGGGATTAGCAGGAGGCGGGGGTTGGTGGGTGGGTGATGCGGTGGGGACGTGGGGC
GTGGTGGGTGTGATGGGTGCGATGGGGTGATGGACGGGGCTTTCGTATTTGCGAGGTGGCATGCA
GGGAACCGAGACGTCGGGATGGATGCATACGAGAGTATGAAAATG
Right flanking sequence: Indices 29327 -- 29826
TTATGTGGGTGGTGTGTGGATGTGAGAGTAGTGGGTTAGTGTGTTAGTGGGTGAGTGGGTGTGGA
CGTGTTGGTTGGGTGTGGTTTGGATGGGTGGTTTGGGTGGGTGGTTTGGGTGAGTATGATTTGGG
TGGGCGTGTGAGAAGTGAGGAATGGAATGAGGTGGATATAAATGAATTAGAGAACTGGTGGGGAT
GTGATGTGTGGGGATGGAGATTGCGATGGAGATTGCGATGGAGATTGCGGGAGTACTTGTTGGAT
GTTAATTCCCGTAGGTAGATCATTCGTAGCATCAGGCGAGTATACCGGTAACGTCCCGGTACCGT
AGCCCAGTGCGCACTGGGCGTACGTATCGTGCCGGTAGCGACTAGTAACTTTCACGTGTGGCGGT
CCTCTGCCCAGCCCTACTCAACCCGTACGACTCGTGCGTTCACCCCATGCTCTACTTTGTGGGGT
CGCATGCTTTTCATATGATGAGCCAATCATGCCCAGACGCATTGC
Found at i:29310 original size:11 final size:11
Alignment explanation
Indices: 29287--29326 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
29277 AGAGGGTGGA
29287 AAGGGTAGAAAG
1 AAGGGT-GAAAG
29299 AAGGGTGAAAG
1 AAGGGTGAAAG
*
29310 AGGGGTGAAAG
1 AAGGGTGAAAG
29321 AAGGGT
1 AAGGGT
29327 TTATGTGGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 20 0.77
12 6 0.23
ACGTcount: A:0.42, C:0.00, G:0.47, T:0.10
Consensus pattern (11 bp):
AAGGGTGAAAG
Left flanking sequence: Indices 28787 -- 29286
ACTGGGGAAGCGTTTCATCGCACCGGATCTTCTTCCGTTTGCAGTTGGCACACCCGAGCTTCAGG
TTGGTGTGCTTGCGCCTTGTGCTGGCGGGGTTGGGCTGCGGCTTTGCCATTCATAACACGGCGTG
CAACACGAACAGGGCGCAGTCGGTGGCGATCAGCACGATAGGGTGGTAAAAGTCTTTTCTCACCC
ACCTTTTAAACTGGCTCAGGTGCGCGCGGGGAGGGTTTAACCCGCTTAATAATATCGGTAGGTAC
TGCACTGGTGCGCCCAGCGCATGTGGAGGGTAAAAATAATGGGGAAGGACGGTGGTCAGGGGGAT
TAGCAGGAGGCGGGGGTTGGTGGGTGGGTGATGCGGTGGGGACGTGGGGCGTGGTGGGTGTGATG
GGTGCGATGGGGTGATGGACGGGGCTTTCGTATTTGCGAGGTGGCATGCAGGGAACCGAGACGTC
GGGATGGATGCATACGAGAGTATGAAAATGGAAAGAGAGGGTGGA
Right flanking sequence: Indices 29327 -- 29826
TTATGTGGGTGGTGTGTGGATGTGAGAGTAGTGGGTTAGTGTGTTAGTGGGTGAGTGGGTGTGGA
CGTGTTGGTTGGGTGTGGTTTGGATGGGTGGTTTGGGTGGGTGGTTTGGGTGAGTATGATTTGGG
TGGGCGTGTGAGAAGTGAGGAATGGAATGAGGTGGATATAAATGAATTAGAGAACTGGTGGGGAT
GTGATGTGTGGGGATGGAGATTGCGATGGAGATTGCGATGGAGATTGCGGGAGTACTTGTTGGAT
GTTAATTCCCGTAGGTAGATCATTCGTAGCATCAGGCGAGTATACCGGTAACGTCCCGGTACCGT
AGCCCAGTGCGCACTGGGCGTACGTATCGTGCCGGTAGCGACTAGTAACTTTCACGTGTGGCGGT
CCTCTGCCCAGCCCTACTCAACCCGTACGACTCGTGCGTTCACCCCATGCTCTACTTTGTGGGGT
CGCATGCTTTTCATATGATGAGCCAATCATGCCCAGACGCATTGC
Found at i:29441 original size:13 final size:13
Alignment explanation
Indices: 29406--29443 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
29396 TTGGTTGGGT
*
29406 GTGGTTTGGATGG
1 GTGGTTTGGGTGG
29419 GTGGTTTGGGTGG
1 GTGGTTTGGGTGG
29432 GTGGTTTGGGTG
1 GTGGTTTGGGTG
29444 AGTATGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.03, C:0.00, G:0.58, T:0.39
Consensus pattern (13 bp):
GTGGTTTGGGTGG
Left flanking sequence: Indices 28906 -- 29405
AACACGGCGTGCAACACGAACAGGGCGCAGTCGGTGGCGATCAGCACGATAGGGTGGTAAAAGTC
TTTTCTCACCCACCTTTTAAACTGGCTCAGGTGCGCGCGGGGAGGGTTTAACCCGCTTAATAATA
TCGGTAGGTACTGCACTGGTGCGCCCAGCGCATGTGGAGGGTAAAAATAATGGGGAAGGACGGTG
GTCAGGGGGATTAGCAGGAGGCGGGGGTTGGTGGGTGGGTGATGCGGTGGGGACGTGGGGCGTGG
TGGGTGTGATGGGTGCGATGGGGTGATGGACGGGGCTTTCGTATTTGCGAGGTGGCATGCAGGGA
ACCGAGACGTCGGGATGGATGCATACGAGAGTATGAAAATGGAAAGAGAGGGTGGAAAGGGTAGA
AAGAAGGGTGAAAGAGGGGTGAAAGAAGGGTTTATGTGGGTGGTGTGTGGATGTGAGAGTAGTGG
GTTAGTGTGTTAGTGGGTGAGTGGGTGTGGACGTGTTGGTTGGGT
Right flanking sequence: Indices 29444 -- 29943
AGTATGATTTGGGTGGGCGTGTGAGAAGTGAGGAATGGAATGAGGTGGATATAAATGAATTAGAG
AACTGGTGGGGATGTGATGTGTGGGGATGGAGATTGCGATGGAGATTGCGATGGAGATTGCGGGA
GTACTTGTTGGATGTTAATTCCCGTAGGTAGATCATTCGTAGCATCAGGCGAGTATACCGGTAAC
GTCCCGGTACCGTAGCCCAGTGCGCACTGGGCGTACGTATCGTGCCGGTAGCGACTAGTAACTTT
CACGTGTGGCGGTCCTCTGCCCAGCCCTACTCAACCCGTACGACTCGTGCGTTCACCCCATGCTC
TACTTTGTGGGGTCGCATGCTTTTCATATGATGAGCCAATCATGCCCAGACGCATTGCGGTGGTA
TACGAGTTTTGTGCTTAAACTTTAGTCGTGCTAGCCCTGCGAACAATGGCTGGCCCACCACCACG
CCCTCCAACTCGTCCCCAAAACAACCACCGCCCCTTTTCTTTTCT
Found at i:29551 original size:12 final size:12
Alignment explanation
Indices: 29534--29570 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
29524 GATGTGTGGG
29534 GATGGAGATTGC
1 GATGGAGATTGC
29546 GATGGAGATTGC
1 GATGGAGATTGC
29558 GATGGAGATTGC
1 GATGGAGATTGC
29570 G
1 G
29571 GGAGTACTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.24, C:0.08, G:0.43, T:0.24
Consensus pattern (12 bp):
GATGGAGATTGC
Left flanking sequence: Indices 29034 -- 29533
TATCGGTAGGTACTGCACTGGTGCGCCCAGCGCATGTGGAGGGTAAAAATAATGGGGAAGGACGG
TGGTCAGGGGGATTAGCAGGAGGCGGGGGTTGGTGGGTGGGTGATGCGGTGGGGACGTGGGGCGT
GGTGGGTGTGATGGGTGCGATGGGGTGATGGACGGGGCTTTCGTATTTGCGAGGTGGCATGCAGG
GAACCGAGACGTCGGGATGGATGCATACGAGAGTATGAAAATGGAAAGAGAGGGTGGAAAGGGTA
GAAAGAAGGGTGAAAGAGGGGTGAAAGAAGGGTTTATGTGGGTGGTGTGTGGATGTGAGAGTAGT
GGGTTAGTGTGTTAGTGGGTGAGTGGGTGTGGACGTGTTGGTTGGGTGTGGTTTGGATGGGTGGT
TTGGGTGGGTGGTTTGGGTGAGTATGATTTGGGTGGGCGTGTGAGAAGTGAGGAATGGAATGAGG
TGGATATAAATGAATTAGAGAACTGGTGGGGATGTGATGTGTGGG
Right flanking sequence: Indices 29571 -- 30070
GGAGTACTTGTTGGATGTTAATTCCCGTAGGTAGATCATTCGTAGCATCAGGCGAGTATACCGGT
AACGTCCCGGTACCGTAGCCCAGTGCGCACTGGGCGTACGTATCGTGCCGGTAGCGACTAGTAAC
TTTCACGTGTGGCGGTCCTCTGCCCAGCCCTACTCAACCCGTACGACTCGTGCGTTCACCCCATG
CTCTACTTTGTGGGGTCGCATGCTTTTCATATGATGAGCCAATCATGCCCAGACGCATTGCGGTG
GTATACGAGTTTTGTGCTTAAACTTTAGTCGTGCTAGCCCTGCGAACAATGGCTGGCCCACCACC
ACGCCCTCCAACTCGTCCCCAAAACAACCACCGCCCCTTTTCTTTTCTCGTGTTCCCGCCTTCGA
TAGGCGGGTGCTTCCTTCCATACAGCAGTCCCCGGTTACTCGCCGTCGCAGCCAGCTGCAAGCGA
GACGACTGGCGCATCCTCCATGCACGGCATTATCACGGCGGGGCT
Found at i:31091 original size:15 final size:15
Alignment explanation
Indices: 31071--31115 Score: 90
Period size: 15 Copynumber: 3.0 Consensus size: 15
31061 ACTGAAGTGG
31071 GGAGAGTATCCTAGT
1 GGAGAGTATCCTAGT
31086 GGAGAGTATCCTAGT
1 GGAGAGTATCCTAGT
31101 GGAGAGTATCCTAGT
1 GGAGAGTATCCTAGT
31116 AGAGGCGAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27
Consensus pattern (15 bp):
GGAGAGTATCCTAGT
Left flanking sequence: Indices 30571 -- 31070
GTCTTTCTCGTTTCTTTTGGCGACCGTCAACATCATGACCGCAACCATTTCAGTAGCATCATCTA
ACCACCATGGACGACGATATGGAAATCAGCCTGCCGCTGCGACCGCTGCTGCGGGCGCTGACAAT
GCTGTGCAAGTCGACGGTGGCCACCAAGGACGGCATTGAGGGCCGCAACGTGCACCGCCACGGCC
CCTCCCAGTACACCATTGCCGCACTATTGAAACGCCAGGCCAGCGACGACAGCCGGGTGGCTCAG
CTGGCCACCAGTCTTCAGCTGACCACGGCGATGAAGGACGGCGACACTGGCGACAACCACGGGGA
GGAAATCGCCTTCGGGGAGCGGATGCGGCTCTGGGAACAGCATGGCGGGAACCGGGCCGGCGAGC
TCATGGACAACAGCTGAGTGTGCATTATTTATAGTAATGAACTTGTTTCAGGAGGGTTGGGGTGG
GCTGAGGTGGGGATAGTATCCTAGTGAAGGAGAGGACTGAAGTGG
Right flanking sequence: Indices 31116 -- 31615
AGAGGCGAGTTCTAGAGGTGGGTTCGCTATGGGACATGCGAACGTGTTGAATGTGTTTGTTACAT
GGCAGTGACGGTGACAGGCTTCGGCGCAGGAACAGGACCCTAGCAGATCGTGCCCGATCGTGACC
GAGTGATGGTACGATCGAGATGGTGGGTCGTATTTGGTCGTATTTAGGTGTCACCGCGTGGCGAA
ATGTGGGGTAGCGTGGGCGTGGCTGTGTGGAATCTAGTTTGTGGTGTGTAGGAGTGTTTAGTGGG
GCGAGGAGACCAGTGGTGGTCGTCAATTGGGTCCGGTAAGTGGAGTTTTGACATCATGAGCACAG
TTGATCACATCGAGGTAGGTCTAGCGGGTAGCCGATCTCGACTTCAGCCGTGCTTCACAGTGCGC
CAACCAAGGGTAAAAGCAGGAGTTGGTATACTTTCTGGCCAACATATGAGGCAGTCTATGTTTTA
AAATAGTCCGTATTGACACTCATTACTATTTAACTACCTCGAACT
Found at i:31632 original size:10 final size:11
Alignment explanation
Indices: 31609--31644 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
31599 TTTAACTACC
31609 TCGAACTGGTT
1 TCGAACTGGTT
31620 TCGAACTGG-T
1 TCGAACTGGTT
*
31630 TCGAACTAGTT
1 TCGAACTGGTT
31641 TCGA
1 TCGA
31645 TGACCTATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (11 bp):
TCGAACTGGTT
Left flanking sequence: Indices 31109 -- 31608
TCCTAGTAGAGGCGAGTTCTAGAGGTGGGTTCGCTATGGGACATGCGAACGTGTTGAATGTGTTT
GTTACATGGCAGTGACGGTGACAGGCTTCGGCGCAGGAACAGGACCCTAGCAGATCGTGCCCGAT
CGTGACCGAGTGATGGTACGATCGAGATGGTGGGTCGTATTTGGTCGTATTTAGGTGTCACCGCG
TGGCGAAATGTGGGGTAGCGTGGGCGTGGCTGTGTGGAATCTAGTTTGTGGTGTGTAGGAGTGTT
TAGTGGGGCGAGGAGACCAGTGGTGGTCGTCAATTGGGTCCGGTAAGTGGAGTTTTGACATCATG
AGCACAGTTGATCACATCGAGGTAGGTCTAGCGGGTAGCCGATCTCGACTTCAGCCGTGCTTCAC
AGTGCGCCAACCAAGGGTAAAAGCAGGAGTTGGTATACTTTCTGGCCAACATATGAGGCAGTCTA
TGTTTTAAAATAGTCCGTATTGACACTCATTACTATTTAACTACC
Right flanking sequence: Indices 31645 -- 32144
TGACCTATTGAAGATGACCGTTGAAGTGGTCCAATTGCGTAGTAAATGTGACAAAGTTCCATTGA
ACAGGTTGGCATAACCCAATGGTCATCGGTGTGGCTTGTCACAATGTCACAGTGCTAATAATAGA
CCCTTGCCGTGACAGCTGACACAAATCGCCCCAACGAGAAGAGAATAGCAGGTTAAACACGATGA
ATACAAGCAAAATCCGATCCATCAACTGTTCCTAAAACACCAGACCATACTATCAATTTCATTCA
ATCCACACTTCCCCCCTCAATTCATCCCATCTTCATCCCTTTTCCTTACATCACCGTACATAATC
TCCACCACCCATCACCATCGTCACAATCTCTCAACTCCACCACACACATCCCCTATTCCAACCAA
GAAATCTGGAAACACCACACCCCCACCCCTTTCCATCCCTTTCCACCCTTCCACCCTTCCCACCC
TTCTCCGAAAACTCCGACTTCTCCACCTTTCGCTCCTTTTCGCGC
Found at i:32097 original size:9 final size:9
Alignment explanation
Indices: 32056--32102 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
32046 ACACCACACC
32056 CCCACCCCTT
1 CCCA-CCCTT
*
32066 TCCATCCCTT
1 CCCA-CCCTT
*
32076 TCCACCCTT
1 CCCACCCTT
32085 -CCACCCTT
1 CCCACCCTT
32093 CCCACCCTT
1 CCCACCCTT
32102 C
1 C
32103 TCCGAAAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
8 8 0.24
9 14 0.41
10 12 0.35
ACGTcount: A:0.11, C:0.62, G:0.00, T:0.28
Consensus pattern (9 bp):
CCCACCCTT
Left flanking sequence: Indices 31556 -- 32055
GCAGTCTATGTTTTAAAATAGTCCGTATTGACACTCATTACTATTTAACTACCTCGAACTGGTTT
CGAACTGGTTCGAACTAGTTTCGATGACCTATTGAAGATGACCGTTGAAGTGGTCCAATTGCGTA
GTAAATGTGACAAAGTTCCATTGAACAGGTTGGCATAACCCAATGGTCATCGGTGTGGCTTGTCA
CAATGTCACAGTGCTAATAATAGACCCTTGCCGTGACAGCTGACACAAATCGCCCCAACGAGAAG
AGAATAGCAGGTTAAACACGATGAATACAAGCAAAATCCGATCCATCAACTGTTCCTAAAACACC
AGACCATACTATCAATTTCATTCAATCCACACTTCCCCCCTCAATTCATCCCATCTTCATCCCTT
TTCCTTACATCACCGTACATAATCTCCACCACCCATCACCATCGTCACAATCTCTCAACTCCACC
ACACACATCCCCTATTCCAACCAAGAAATCTGGAAACACCACACC
Right flanking sequence: Indices 32103 -- 32602
TCCGAAAACTCCGACTTCTCCACCTTTCGCTCCTTTTCGCGCTTGCTGAAAAATCATCATCACCA
TGCTCAGACTAGCCCGCTCCGCCCGTGTCGCGCGCCACGCAGTCGCCCGCACCCGTGTGGCCGCT
CCCGCTGCCTCCCTCGTGGCACGCCGCTTCGTTTCCGAGGCCCCGAAGGAAGTTTTCACCCGCCT
CCACGACGAGGCCGACCCCCAGCGCACCTCGTTCTTCGAGTACACCTGGGGCCTGTGGTTGACCA
ACGACAAGCTTGAGAAGGCTCGGCGCAACACCAAGTTCCTGATCGAGGGCATCACCGACGTGGTG
AAGCTGCTCAAGGGCCAGGAGGGCCTTTTGCCCCCTCGGGCCGACGCCGGGATCCGCTACTTGGA
CAGCAACGTCCAGGCGCTCGTGGGCGCCCACGGCGGGTCGCTCAAGCTGATTGCGTCCATCCACG
AGGGCAAGCACCACCGCATCTACAAGATCATCCTCAACGAGGGCG
Found at i:32097 original size:17 final size:18
Alignment explanation
Indices: 32065--32102 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
32055 CCCCACCCCT
*
32065 TTCCATCCCTTTCCACCC
1 TTCCATCCCTTCCCACCC
32083 TTCCA-CCCTTCCCACCC
1 TTCCATCCCTTCCCACCC
32100 TTC
1 TTC
32103 TCCGAAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.11, C:0.58, G:0.00, T:0.32
Consensus pattern (18 bp):
TTCCATCCCTTCCCACCC
Left flanking sequence: Indices 31565 -- 32064
GTTTTAAAATAGTCCGTATTGACACTCATTACTATTTAACTACCTCGAACTGGTTTCGAACTGGT
TCGAACTAGTTTCGATGACCTATTGAAGATGACCGTTGAAGTGGTCCAATTGCGTAGTAAATGTG
ACAAAGTTCCATTGAACAGGTTGGCATAACCCAATGGTCATCGGTGTGGCTTGTCACAATGTCAC
AGTGCTAATAATAGACCCTTGCCGTGACAGCTGACACAAATCGCCCCAACGAGAAGAGAATAGCA
GGTTAAACACGATGAATACAAGCAAAATCCGATCCATCAACTGTTCCTAAAACACCAGACCATAC
TATCAATTTCATTCAATCCACACTTCCCCCCTCAATTCATCCCATCTTCATCCCTTTTCCTTACA
TCACCGTACATAATCTCCACCACCCATCACCATCGTCACAATCTCTCAACTCCACCACACACATC
CCCTATTCCAACCAAGAAATCTGGAAACACCACACCCCCACCCCT
Right flanking sequence: Indices 32103 -- 32602
TCCGAAAACTCCGACTTCTCCACCTTTCGCTCCTTTTCGCGCTTGCTGAAAAATCATCATCACCA
TGCTCAGACTAGCCCGCTCCGCCCGTGTCGCGCGCCACGCAGTCGCCCGCACCCGTGTGGCCGCT
CCCGCTGCCTCCCTCGTGGCACGCCGCTTCGTTTCCGAGGCCCCGAAGGAAGTTTTCACCCGCCT
CCACGACGAGGCCGACCCCCAGCGCACCTCGTTCTTCGAGTACACCTGGGGCCTGTGGTTGACCA
ACGACAAGCTTGAGAAGGCTCGGCGCAACACCAAGTTCCTGATCGAGGGCATCACCGACGTGGTG
AAGCTGCTCAAGGGCCAGGAGGGCCTTTTGCCCCCTCGGGCCGACGCCGGGATCCGCTACTTGGA
CAGCAACGTCCAGGCGCTCGTGGGCGCCCACGGCGGGTCGCTCAAGCTGATTGCGTCCATCCACG
AGGGCAAGCACCACCGCATCTACAAGATCATCCTCAACGAGGGCG
Found at i:34059 original size:20 final size:20
Alignment explanation
Indices: 34030--34076 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
34020 TATATAGTAG
34030 AAAG-GAAGAAAGAAAGGGA
1 AAAGAGAAGAAAGAAAGGGA
34049 AAAGAGAAGAAAGAAAGGGA
1 AAAGAGAAGAAAGAAAGGGA
34069 AAAGAGAA
1 AAAGAGAA
34077 TCGTAAGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (20 bp):
AAAGAGAAGAAAGAAAGGGA
Left flanking sequence: Indices 33530 -- 34029
AGCAGGCCCAGTACAAGTTCATGTACTTCAAGACGCGCAACGAGCGCATGTGGGAGGTGGGGTTG
AACCAGCGGCGCCACGACTTGATTGCGGTGGCGCTGCCGCACATCAAGGCGCTCAAGGCGCCGTA
CACCGCGGTGCTTGACATCAAGAACGACCGCGACTACTTGTACGCCGAGAACGCCATTGTGAGCT
TGCAGCCCATGTGGGAGCTGTACGTGGCCAACCAGCTCTGCAACACCGAGGACCCGCAGTTCCCC
ATCAAGTACACCAAGGACATGATCACCGACATTCTGACGCGGTTGGAGGAGTACCAGTTGGACCT
TGGGTCGCAGCCGTTTGCTGCCACCGGCGGGTGGGTGCCCCAGGACATGTTTGTCACCTTGCGCG
ACCAGGGGATCTTGGTCCAGGGGGCTGACGGTAACTGGTCGATTGCCACCGATAAGGTGTTGGAG
GAGGAGGCCAAGGACGAGGAGAAGTAGGTGATATGTATATAGTAG
Right flanking sequence: Indices 34077 -- 34576
TCGTAAGAAGGAAAAAAGAGTTTAGTAAGAAGGGATAAGGCGTGATGAGTGGTTTTGTTGTGGTG
TTGTGGGGTTGTGAGGTTCTAGTGGTGTTCAAGTGGTGTTCAAGTGGTGTTGTAGTGGTGTTATA
GTGGTGTTATAGTTATGGTCTGTGTTGCGGTGGTATGGCAAGTTTTGAATATGAAGTGTGATGTT
CTGATATTGTGCTCATCTTGGTGTTGTTCTGATGCTGTACTGCTGCTCTAGTGATGTTTTACCGT
GTTATACTGACGTTTTGCTGATGTTCAAGGGGTAATCAATGCTTCGTGTGCAAATGATGTGCTGG
TGATGTGCTGGTGATGTGCTGGTGATGTGCTGGTGATGTGTCAAGAATGTGTCATGAATGTGCCA
TAGATTCAATACGGGACAAATTGTTTATCAACGAAACTAACGGGCAATGTTGTAAGAAATCTGTT
CATCATCTATTTTTAGGTTATAATCGTTAACATATCTCATTTGTT
Found at i:34215 original size:11 final size:11
Alignment explanation
Indices: 34161--34219 Score: 77
Period size: 11 Copynumber: 5.4 Consensus size: 11
34151 TGTGAGGTTC
34161 TAGTGGTGTTCA
1 TAGTGGTGTT-A
34173 -AGTGGTGTTCA
1 TAGTGGTGTT-A
*
34184 -AGTGGTGTTG
1 TAGTGGTGTTA
34194 TAGTGGTGTTA
1 TAGTGGTGTTA
34205 TAGTGGTGTTA
1 TAGTGGTGTTA
34216 TAGT
1 TAGT
34220 TATGGTCTGT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
11 44 1.00
ACGTcount: A:0.17, C:0.03, G:0.37, T:0.42
Consensus pattern (11 bp):
TAGTGGTGTTA
Left flanking sequence: Indices 33661 -- 34160
ACCGCGGTGCTTGACATCAAGAACGACCGCGACTACTTGTACGCCGAGAACGCCATTGTGAGCTT
GCAGCCCATGTGGGAGCTGTACGTGGCCAACCAGCTCTGCAACACCGAGGACCCGCAGTTCCCCA
TCAAGTACACCAAGGACATGATCACCGACATTCTGACGCGGTTGGAGGAGTACCAGTTGGACCTT
GGGTCGCAGCCGTTTGCTGCCACCGGCGGGTGGGTGCCCCAGGACATGTTTGTCACCTTGCGCGA
CCAGGGGATCTTGGTCCAGGGGGCTGACGGTAACTGGTCGATTGCCACCGATAAGGTGTTGGAGG
AGGAGGCCAAGGACGAGGAGAAGTAGGTGATATGTATATAGTAGAAAGGAAGAAAGAAAGGGAAA
AGAGAAGAAAGAAAGGGAAAAGAGAATCGTAAGAAGGAAAAAAGAGTTTAGTAAGAAGGGATAAG
GCGTGATGAGTGGTTTTGTTGTGGTGTTGTGGGGTTGTGAGGTTC
Right flanking sequence: Indices 34220 -- 34719
TATGGTCTGTGTTGCGGTGGTATGGCAAGTTTTGAATATGAAGTGTGATGTTCTGATATTGTGCT
CATCTTGGTGTTGTTCTGATGCTGTACTGCTGCTCTAGTGATGTTTTACCGTGTTATACTGACGT
TTTGCTGATGTTCAAGGGGTAATCAATGCTTCGTGTGCAAATGATGTGCTGGTGATGTGCTGGTG
ATGTGCTGGTGATGTGCTGGTGATGTGTCAAGAATGTGTCATGAATGTGCCATAGATTCAATACG
GGACAAATTGTTTATCAACGAAACTAACGGGCAATGTTGTAAGAAATCTGTTCATCATCTATTTT
TAGGTTATAATCGTTAACATATCTCATTTGTTGTATCCAGCTGCGGCGCTAAATCGGTAAAAGCT
GCGCTTCCGGGGTCTTGGGCTCTGACCGCTTGAGATACTCAAACCCGGCAACCATGAGGAGCATC
ACGGCAAGCATCAGAAGCAACAACGCATTCATGTAATACAGGAGT
Found at i:34405 original size:11 final size:11
Alignment explanation
Indices: 34391--34441 Score: 102
Period size: 11 Copynumber: 4.6 Consensus size: 11
34381 CGTGTGCAAA
34391 TGATGTGCTGG
1 TGATGTGCTGG
34402 TGATGTGCTGG
1 TGATGTGCTGG
34413 TGATGTGCTGG
1 TGATGTGCTGG
34424 TGATGTGCTGG
1 TGATGTGCTGG
34435 TGATGTG
1 TGATGTG
34442 TCAAGAATGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 40 1.00
ACGTcount: A:0.10, C:0.08, G:0.45, T:0.37
Consensus pattern (11 bp):
TGATGTGCTGG
Left flanking sequence: Indices 33891 -- 34390
GCCCCAGGACATGTTTGTCACCTTGCGCGACCAGGGGATCTTGGTCCAGGGGGCTGACGGTAACT
GGTCGATTGCCACCGATAAGGTGTTGGAGGAGGAGGCCAAGGACGAGGAGAAGTAGGTGATATGT
ATATAGTAGAAAGGAAGAAAGAAAGGGAAAAGAGAAGAAAGAAAGGGAAAAGAGAATCGTAAGAA
GGAAAAAAGAGTTTAGTAAGAAGGGATAAGGCGTGATGAGTGGTTTTGTTGTGGTGTTGTGGGGT
TGTGAGGTTCTAGTGGTGTTCAAGTGGTGTTCAAGTGGTGTTGTAGTGGTGTTATAGTGGTGTTA
TAGTTATGGTCTGTGTTGCGGTGGTATGGCAAGTTTTGAATATGAAGTGTGATGTTCTGATATTG
TGCTCATCTTGGTGTTGTTCTGATGCTGTACTGCTGCTCTAGTGATGTTTTACCGTGTTATACTG
ACGTTTTGCTGATGTTCAAGGGGTAATCAATGCTTCGTGTGCAAA
Right flanking sequence: Indices 34442 -- 34941
TCAAGAATGTGTCATGAATGTGCCATAGATTCAATACGGGACAAATTGTTTATCAACGAAACTAA
CGGGCAATGTTGTAAGAAATCTGTTCATCATCTATTTTTAGGTTATAATCGTTAACATATCTCAT
TTGTTGTATCCAGCTGCGGCGCTAAATCGGTAAAAGCTGCGCTTCCGGGGTCTTGGGCTCTGACC
GCTTGAGATACTCAAACCCGGCAACCATGAGGAGCATCACGGCAAGCATCAGAAGCAACAACGCA
TTCATGTAATACAGGAGTTTTTCAGCAGGTTTGGCTTTGTCACTAGTCTTCTCCAGCTGCAGAAG
GGCCTCGTGATCCTTGGGAGGGTTTACTTGTTGTCTCAAGTCTGTGATCTCAGCGTGGATCTTTT
GCTGGGTTGCGTGGAGGGCCTTGACTTCGTGGACAAGATGGGTGAGGAGATGAATCTCTTTGTCC
TTGTTGATGTGGATATGGTAGGTCGGTGAAGCGGGAGTCTCAGGT
Found at i:34408 original size:22 final size:22
Alignment explanation
Indices: 34383--34431 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
34373 CAATGCTTCG
34383 TGTGCAAATGATGTGCTGGTGA
1 TGTGCAAATGATGTGCTGGTGA
***
34405 TGTGCTGGTGATGTGCTGGTGA
1 TGTGCAAATGATGTGCTGGTGA
34427 TGTGC
1 TGTGC
34432 TGGTGATGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.14, C:0.10, G:0.41, T:0.35
Consensus pattern (22 bp):
TGTGCAAATGATGTGCTGGTGA
Left flanking sequence: Indices 33883 -- 34382
GGGTGGGTGCCCCAGGACATGTTTGTCACCTTGCGCGACCAGGGGATCTTGGTCCAGGGGGCTGA
CGGTAACTGGTCGATTGCCACCGATAAGGTGTTGGAGGAGGAGGCCAAGGACGAGGAGAAGTAGG
TGATATGTATATAGTAGAAAGGAAGAAAGAAAGGGAAAAGAGAAGAAAGAAAGGGAAAAGAGAAT
CGTAAGAAGGAAAAAAGAGTTTAGTAAGAAGGGATAAGGCGTGATGAGTGGTTTTGTTGTGGTGT
TGTGGGGTTGTGAGGTTCTAGTGGTGTTCAAGTGGTGTTCAAGTGGTGTTGTAGTGGTGTTATAG
TGGTGTTATAGTTATGGTCTGTGTTGCGGTGGTATGGCAAGTTTTGAATATGAAGTGTGATGTTC
TGATATTGTGCTCATCTTGGTGTTGTTCTGATGCTGTACTGCTGCTCTAGTGATGTTTTACCGTG
TTATACTGACGTTTTGCTGATGTTCAAGGGGTAATCAATGCTTCG
Right flanking sequence: Indices 34432 -- 34931
TGGTGATGTGTCAAGAATGTGTCATGAATGTGCCATAGATTCAATACGGGACAAATTGTTTATCA
ACGAAACTAACGGGCAATGTTGTAAGAAATCTGTTCATCATCTATTTTTAGGTTATAATCGTTAA
CATATCTCATTTGTTGTATCCAGCTGCGGCGCTAAATCGGTAAAAGCTGCGCTTCCGGGGTCTTG
GGCTCTGACCGCTTGAGATACTCAAACCCGGCAACCATGAGGAGCATCACGGCAAGCATCAGAAG
CAACAACGCATTCATGTAATACAGGAGTTTTTCAGCAGGTTTGGCTTTGTCACTAGTCTTCTCCA
GCTGCAGAAGGGCCTCGTGATCCTTGGGAGGGTTTACTTGTTGTCTCAAGTCTGTGATCTCAGCG
TGGATCTTTTGCTGGGTTGCGTGGAGGGCCTTGACTTCGTGGACAAGATGGGTGAGGAGATGAAT
CTCTTTGTCCTTGTTGATGTGGATATGGTAGGTCGGTGAAGCGGG
Found at i:34451 original size:22 final size:22
Alignment explanation
Indices: 34404--34452 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
34394 TGTGCTGGTG
** *
34404 ATGTGCTGGTGATGTGCTGGTG
1 ATGTGCTGGTGATGTGCAAGTA
34426 ATGTGCTGGTGATGTGTCAAG-A
1 ATGTGCTGGTGATGTG-CAAGTA
34448 ATGTG
1 ATGTG
34453 TCATGAATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.16, C:0.08, G:0.41, T:0.35
Consensus pattern (22 bp):
ATGTGCTGGTGATGTGCAAGTA
Left flanking sequence: Indices 33904 -- 34403
TTTGTCACCTTGCGCGACCAGGGGATCTTGGTCCAGGGGGCTGACGGTAACTGGTCGATTGCCAC
CGATAAGGTGTTGGAGGAGGAGGCCAAGGACGAGGAGAAGTAGGTGATATGTATATAGTAGAAAG
GAAGAAAGAAAGGGAAAAGAGAAGAAAGAAAGGGAAAAGAGAATCGTAAGAAGGAAAAAAGAGTT
TAGTAAGAAGGGATAAGGCGTGATGAGTGGTTTTGTTGTGGTGTTGTGGGGTTGTGAGGTTCTAG
TGGTGTTCAAGTGGTGTTCAAGTGGTGTTGTAGTGGTGTTATAGTGGTGTTATAGTTATGGTCTG
TGTTGCGGTGGTATGGCAAGTTTTGAATATGAAGTGTGATGTTCTGATATTGTGCTCATCTTGGT
GTTGTTCTGATGCTGTACTGCTGCTCTAGTGATGTTTTACCGTGTTATACTGACGTTTTGCTGAT
GTTCAAGGGGTAATCAATGCTTCGTGTGCAAATGATGTGCTGGTG
Right flanking sequence: Indices 34453 -- 34952
TCATGAATGTGCCATAGATTCAATACGGGACAAATTGTTTATCAACGAAACTAACGGGCAATGTT
GTAAGAAATCTGTTCATCATCTATTTTTAGGTTATAATCGTTAACATATCTCATTTGTTGTATCC
AGCTGCGGCGCTAAATCGGTAAAAGCTGCGCTTCCGGGGTCTTGGGCTCTGACCGCTTGAGATAC
TCAAACCCGGCAACCATGAGGAGCATCACGGCAAGCATCAGAAGCAACAACGCATTCATGTAATA
CAGGAGTTTTTCAGCAGGTTTGGCTTTGTCACTAGTCTTCTCCAGCTGCAGAAGGGCCTCGTGAT
CCTTGGGAGGGTTTACTTGTTGTCTCAAGTCTGTGATCTCAGCGTGGATCTTTTGCTGGGTTGCG
TGGAGGGCCTTGACTTCGTGGACAAGATGGGTGAGGAGATGAATCTCTTTGTCCTTGTTGATGTG
GATATGGTAGGTCGGTGAAGCGGGAGTCTCAGGTACTGTCTCTGT
Found at i:36460 original size:18 final size:18
Alignment explanation
Indices: 36435--36523 Score: 124
Period size: 18 Copynumber: 4.9 Consensus size: 18
36425 TGGGACCAAG
* *
36435 CAGACTGGGTGGTACACG
1 CAGACTGGGTGGTCCACA
* *
36453 CGGACTGGGTGATCCACA
1 CAGACTGGGTGGTCCACA
*
36471 CAGACTGGGTGGTCCACG
1 CAGACTGGGTGGTCCACA
36489 CAGACTGGGTGGTCCACA
1 CAGACTGGGTGGTCCACA
*
36507 CAGACTGGGTAGTCCAC
1 CAGACTGGGTGGTCCAC
36524 TCAGTAGTCT
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (18 bp):
CAGACTGGGTGGTCCACA
Left flanking sequence: Indices 35935 -- 36434
CCCGTGGCGATTCGATACCTGGTACAGGATCGAACTGGAGTTGGTGGCCACGGAGGGCGGCCGCC
ACCGGTGGGTCGGCACCTTGGTGGAGCCCGACGGAACACGGGTCTACATTGCCCTGTTCTACACC
AGCGAGAGTGGTCTCAAGGGGCTGGCAGCCCAATGGCTCGAGTACTACAAGTACAACGGAGACAA
AAAGACCCCCGAGACCCGCGGGTGCCAGAGCTACGGCAAGGTTTTCTTCAAGCGGCCACGGTTCC
AAGGTGGCGGGTCTCACAACTACACCGGGATCATCAATCTCGAGGTGTTTGACCAGTGTGCTGTG
GCTGCCAACACACCGAACAACCGCGGTGGGTTCACGCACAAGGGAGTCTACTTCGAGGGTGGCTT
CTTACCCCATCCAAAATGATTTTAACTTTGTGTAAGGTATCGTTGTGTTAATTCTATGATTTCTC
CTTCAACTATAAGTTTCCATGTCCTTGAGTAGGTCTGGGACCAAG
Right flanking sequence: Indices 36524 -- 37023
TCAGTAGTCTCCTAGTGTTGACTACCTAACCAGCAGTGCGCACCTTCCCAGTCGACAGCACACCA
TGTCTTCGCTACTCTCTTCACCGTGCCAGCGGTTACAAGTACTTGCGCCCCACCTGCTTCACCTT
CATGTCAAAGTCCGGCGACGTCAACGGCTGGTTGACGGCGTAGAACGGGTTCATTAAGCACTTGA
CGTACAACTCGTTCACCTCGTAGAAGAACTGGCGGATCAGCCCGTCGTCGCTCTTGTCGTACACC
AACACCAACCGCACGTTCCCCTGGGTGATGTAGCCCGCCACCAGGTACCCGGAGAACAGGTCGAC
CTTGCCCAAGTAGAACTGGGGCGCGCTCCACTGGAGCTCCTCGAGGAGGTCCAACAGCAGGTTGG
CTATGAACGGCAACAACTCGCGGACATTAGGGGGGAACTGGCCCACCCCGCCCACCAGCTTGAAA
CTGGCAAACTCGAGCTCGTAGAGCGGCGTGTCGTTGTTGCCGATG
Found at i:36522 original size:36 final size:36
Alignment explanation
Indices: 36435--36523 Score: 142
Period size: 36 Copynumber: 2.5 Consensus size: 36
36425 TGGGACCAAG
* *
36435 CAGACTGGGTGGTACACGCGGACTGGGTGATCCACA
1 CAGACTGGGTGGTCCACGCAGACTGGGTGATCCACA
*
36471 CAGACTGGGTGGTCCACGCAGACTGGGTGGTCCACA
1 CAGACTGGGTGGTCCACGCAGACTGGGTGATCCACA
*
36507 CAGACTGGGTAGTCCAC
1 CAGACTGGGTGGTCCAC
36524 TCAGTAGTCT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (36 bp):
CAGACTGGGTGGTCCACGCAGACTGGGTGATCCACA
Left flanking sequence: Indices 35935 -- 36434
CCCGTGGCGATTCGATACCTGGTACAGGATCGAACTGGAGTTGGTGGCCACGGAGGGCGGCCGCC
ACCGGTGGGTCGGCACCTTGGTGGAGCCCGACGGAACACGGGTCTACATTGCCCTGTTCTACACC
AGCGAGAGTGGTCTCAAGGGGCTGGCAGCCCAATGGCTCGAGTACTACAAGTACAACGGAGACAA
AAAGACCCCCGAGACCCGCGGGTGCCAGAGCTACGGCAAGGTTTTCTTCAAGCGGCCACGGTTCC
AAGGTGGCGGGTCTCACAACTACACCGGGATCATCAATCTCGAGGTGTTTGACCAGTGTGCTGTG
GCTGCCAACACACCGAACAACCGCGGTGGGTTCACGCACAAGGGAGTCTACTTCGAGGGTGGCTT
CTTACCCCATCCAAAATGATTTTAACTTTGTGTAAGGTATCGTTGTGTTAATTCTATGATTTCTC
CTTCAACTATAAGTTTCCATGTCCTTGAGTAGGTCTGGGACCAAG
Right flanking sequence: Indices 36524 -- 37023
TCAGTAGTCTCCTAGTGTTGACTACCTAACCAGCAGTGCGCACCTTCCCAGTCGACAGCACACCA
TGTCTTCGCTACTCTCTTCACCGTGCCAGCGGTTACAAGTACTTGCGCCCCACCTGCTTCACCTT
CATGTCAAAGTCCGGCGACGTCAACGGCTGGTTGACGGCGTAGAACGGGTTCATTAAGCACTTGA
CGTACAACTCGTTCACCTCGTAGAAGAACTGGCGGATCAGCCCGTCGTCGCTCTTGTCGTACACC
AACACCAACCGCACGTTCCCCTGGGTGATGTAGCCCGCCACCAGGTACCCGGAGAACAGGTCGAC
CTTGCCCAAGTAGAACTGGGGCGCGCTCCACTGGAGCTCCTCGAGGAGGTCCAACAGCAGGTTGG
CTATGAACGGCAACAACTCGCGGACATTAGGGGGGAACTGGCCCACCCCGCCCACCAGCTTGAAA
CTGGCAAACTCGAGCTCGTAGAGCGGCGTGTCGTTGTTGCCGATG
Found at i:37307 original size:12 final size:12
Alignment explanation
Indices: 37290--37351 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 12
37280 CACTATCTGT
37290 CCACACTACCAC
1 CCACACTACCAC
* *
37302 CCACACCACCCC
1 CCACACTACCAC
*
37314 CCACACTACTAC
1 CCACACTACCAC
* *
37326 CCACTCTATCTAC
1 CCACACTA-CCAC
*
37339 TC-CACTACCAC
1 CCACACTACCAC
37350 CC
1 CC
37352 GTCTTTCTAC
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
11 4 0.10
12 30 0.77
13 5 0.13
ACGTcount: A:0.27, C:0.58, G:0.00, T:0.15
Consensus pattern (12 bp):
CCACACTACCAC
Left flanking sequence: Indices 36790 -- 37289
AACCGCACGTTCCCCTGGGTGATGTAGCCCGCCACCAGGTACCCGGAGAACAGGTCGACCTTGCC
CAAGTAGAACTGGGGCGCGCTCCACTGGAGCTCCTCGAGGAGGTCCAACAGCAGGTTGGCTATGA
ACGGCAACAACTCGCGGACATTAGGGGGGAACTGGCCCACCCCGCCCACCAGCTTGAAACTGGCA
AACTCGAGCTCGTAGAGCGGCGTGTCGTTGTTGCCGATGACACTGAAGTAGAACATCGCCGCTAC
AGACTACGGAGGCGAATGTTTCGTTGGCGCGCGGCGCGGATGGTACGAGTGTATGCGACTATGGC
CTGGTAGCCACGGTGATGGGTGGCAATTGCCTAAACGAGAAGGCAAGACAGACAGCAAGGTGGGT
GGGTGCTAGTTAGTCGTACTAGTGCGCTGTGCATGTGTTAGTAGTGGCTATTGTTCAGGTACTAG
ATTAGTATATACTATTGCCAGCCAATCATGAACCACACTATCTGT
Right flanking sequence: Indices 37352 -- 37851
GTCTTTCTACTTCTCCCTCCCTCACAACCCCTACCACCCACCTCACAACCGTCCGCCCGCACACG
TGACCTCTGTTTACCTCTGGGCCCGATCGGGCGCGGTCGCACCACCCGCAAAAAACGAACCCAAC
CAAAAACACAAACCTTACCTGATCCCGCTGACGGTGACCCCTATCCCTGGACGGCTTTTGCACGC
ACTCAACGGATAGCGGGTATGTTAGCCAACGTCCGTTTTGACCAGGACGACCCCTGGAAACCCAA
TTTTGTTGTCTACTCCAACATCCCCCGACAATGTCGCCGATGGGCCCGGGCCTACGCGCTGTTGC
CGCGGTACCAGCGCGAGCTGGTGGCGATAGACTTGATCCGAGCGGAGCCTGTGGATGCTGTGGCT
GTTCCTCAGCGCTCCACCCGCGGTTCTGACCGCTCCACCGGCTGGACGGACTCCGACACCGATTG
CGAGCCCTCTGGGCTGGGGGTGGTGGATCTCCGGCTTGCAATCCG
Found at i:38486 original size:21 final size:21
Alignment explanation
Indices: 38440--38487 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
38430 TGCCGCTACG
* *
38440 AGAGCACGAGCTACGGCTACA
1 AGAGCACGAGCTACAGCTAAA
*
38461 GGAGCACGAGCTACAGCTAAA
1 AGAGCACGAGCTACAGCTAAA
38482 AGAGCA
1 AGAGCA
38488 GCTACGGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.25, G:0.29, T:0.08
Consensus pattern (21 bp):
AGAGCACGAGCTACAGCTAAA
Left flanking sequence: Indices 37940 -- 38439
GCCGTGTTCCGCCACGACGACTTGCCCGAGCTGGAGCTGTTTGTGGTGGTGGTCACGCTCAAGGT
GCTCCAATTCGTGGTGGGAGACGCTGTGCGGGTGCAGTATCTCGAGGACAACCACTACAGCCTCT
TGGCTGGGTGGCATCCCGAGTTGGTGGCGCTGATTCTGGCGTACATCGAGGTGGTGTTTGCCAAC
CAGTTGCACCACATGGACACCGAGCTGCCAGTGCCGTCGTTGGCGAGCAGTCCCGTGCCGCCGGC
GGCCGGGAGCGACTTCCCCGAGTTGTGGATGTTGGACGGGTGCCTGAGCGGGTCTGAGGCGCCCA
GTGACGACGACGAGCCGCGCGACATGTCTGACCTGACGTTGGGGGACGACGACCCGTTGGACAAG
GTGTTTGTGGGGTTTGATCCGTTTGACTACGAGGAACGCGAGAATGTCAAGGGTGGGCTTCTGAG
ACACGACCTGAGACAGGAGCACGAGCAGCCGGGGCTGCCGCTACG
Right flanking sequence: Indices 38488 -- 38987
GCTACGGTTACAAGCGCACGAGCTCCACGAGCAAAAGCTCGAGCCGCCCGTCCAAGGCTTCGAGC
TACCAGCCCAAAGTCACTTGCCACCTCTGAAACACGAGCTGAAACATGCCCCCCACCACCCCCAC
CCGGACACTCTGAAACACGACGCCCCCCACTCCGACACTCTGAAACACCACCTGAAACCTCCTCC
CACCACAGACTCTCCTCCCACCTCCAAACCTCTCACGACACCCGAGAACCCACCGTTAGACAAAC
TGGTGGGCCTCGCCCCCGCACCCGTGCTTGCTCCAGCTCCCGCCCGGGCCCCAGCCCCGATGGCG
CTGCTGTCACTGGTGCTGACGCTTCTCCCGCTGCCGAAACAGACGTTCATTGCCGACCCCTCCAA
CATGCGCCACAACGACAGCTACACGCTGTCGCCCGCGCTCGCGGCTCCCGCTGCCGTCAAGCACC
ATCCAGAGTACCTCCTCTTGGACGACTTGAACGAGGTCGAGTGCA
Found at i:39568 original size:12 final size:12
Alignment explanation
Indices: 39551--39580 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
39541 CCCTGTGAAA
39551 CTGGCGGCCCTG
1 CTGGCGGCCCTG
*
39563 CTGGCGGCGCTG
1 CTGGCGGCCCTG
39575 CTGGCG
1 CTGGCG
39581 TTGCCGTCGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.37, G:0.47, T:0.17
Consensus pattern (12 bp):
CTGGCGGCCCTG
Left flanking sequence: Indices 39051 -- 39550
CAGGCACGCCCACCAAGCTGTTGCGCCCGGTGAGGCTTCCACAGACCCCCGGAGCCGACGACGAC
GACGACTTTGTCCCCTCGTGGGCCCGGTCGCGGCTGAACTCGAAGGCCGATCCTCTGGCGTTGGA
ACCGCCGACTCTGGCGACCCGCCAGCTGTTCCGGCTTCCCAGCCGGTCGGTGTTGCGTCCCACCA
CCCGCCACAACACCACCGACAGCTCCAAGCCTCAGCTGCCCACGGTGTCGGTGCCGCCACTGCCC
CAGACGCGGTCGCAGCCGCTCACGCGGAATCTGCTGTTCAAACTGCCCCGGCGGCCGTTGCGGAC
GCTGATGAGCGCCGCGCTCGCCGAGTTTGAGATCCACGAGGCCTTGCACGACCTGGCGCTGGTGC
CACGGTACATCAAGGACAACAAGCGGCTCAAGTACATCAAGGTGGGCAAGGTGCAGAAATACGTG
CACTTGTTTGAGGAGCAGGCCGAGGAGCCGGGCAGCCCTGTGAAA
Right flanking sequence: Indices 39581 -- 40080
TTGCCGTCGCGCAAGCTGCTGGTGGCCCAGTTGTAGACTGATTTGCATCGTGACAATAAATGAGA
TAAGTAAAGGGTAGGGATTGAGTGAGAGATGGGAAGCAGAAGGTGGGAATTAGAAGGTGGGGGGC
GGAGCAATTGGGAAGCAGAGAAAGCGAGAATTTTAAGACAAGAGCTATGTGTTTGGTGAAACGAT
GAGTGGAGTGATTCGGTTAAGCGAATGTATTTACGAAATGATGAGATACGGCATAAATTGGGTGT
AAAGGTAGGACGTTTGGGTGAACATGTGTACCTCCGAGTTGTGGAGATGATTTAAAAGGGCTACA
GTCCCAATTACACCGTTTGGGGGGGCTCTTTCCGCCCTCATTCGGCGGCTAAACGGGCTGTACAA
AAATAGCAAAAACCGATTTCACAGCCTGAGACAGGTTGCAAAGCACTCTTTAGAAAGCATTGACT
ACACAATTGTCAGAAATGACTCTACACTACACCTACCACATTCTC
Found at i:47437 original size:22 final size:23
Alignment explanation
Indices: 47388--47456 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
47378 GACAACAACC
47388 ATGTGTCTACTGATTGAGCTTCG
1 ATGTGTCTACTGATTGAGCTTCG
*
47411 ATGTGTCTACTGATTG-GCTTTTG
1 ATGTGTCTACTGATTGAGC-TTCG
*
47434 -TGTGTCTAAGCTGAATGAGCTTC
1 ATGTGTCT-A-CTGATTGAGCTTC
47457 AATCAGTCCG
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
22 9 0.23
23 20 0.51
24 8 0.21
25 2 0.05
ACGTcount: A:0.17, C:0.16, G:0.26, T:0.41
Consensus pattern (23 bp):
ATGTGTCTACTGATTGAGCTTCG
Left flanking sequence: Indices 46888 -- 47387
GATCTCAGTACCGAGGTCGGGAGACAAGTCAAACTTGGCGTACGCATCCTGTCCCTTGGGGAACA
AGTGCTTGAAGGAGCTGTCGCCAAAGTGACCGCGATCTTTATTTTGCCAGCCCGGGTTCTCGATC
CGGGGAAACTTCCCTGCTTCGTCTTTCGGGGTGGGCACGAGGTACTGGGGGTACTTGACCGTTTT
GCGGTGTTCTTCGATGTCGAGAGTTTCGACCTTTCCCCCAGCCAAGTGGAGGTTCGCGGGTTCGA
AGATGTCGGAGTAGCCGGAGCGGTAGGTGGCCATGGTAGTAGAGAGTTGGGGAGTAGGAGAGACT
GAGGATGGCTCGTTTTATACTAGGGGCTGGTTGCCACAGTGGGGCCCACCACAGCTGACTAATGT
TGTAGGGACTGTGGCGGATAGGGTGGTTACAAAGTGAAGATAAATCGTAGGGTGGCTGAAGGGGT
GATGATGAACTTGAGACAACCAAACGATCATGGTTGACAACAACC
Right flanking sequence: Indices 47457 -- 47956
AATCAGTCCGGTTGAAAATTTACGAATGTACCCAGATTTGACATACAACAAACCAATAGCCCGCT
TTCCTAGATCACACAATTGCCTGTTCTGGTTCTTGGCATCCATCCACCACTGTCTACGATCTCCG
TTGCTGACAATAGGGCTTACTTTGCATAAATCTTGGCAACGGTTGGCATTGTGTCAGGAACCAAG
TAGACCAGTGATGAGGCGCGATGTGGCTAGCGAGCGCGAGTGGCTAGCATGGACTAGCGTCCCGC
CCCCACTCTGGTCGTCTCCGCTTACACGGTGGCCTTGGGTCTCACTCTGCGACCAAAATAGCGCA
AATGCACCAAGACAACCAACGCCCTACTATAAACTAACTCAAGCACCTTCTACCAAAACACGCAA
CTCGATGCCCCCTCTCTCTTCTTCTGCCCCTAATTACCCTATTCCGCCCGTTTTTTCGCCCGGTT
TCCCCAAAATTCTCCCCTTTCTCACCGTCTTGTCCCTACCAATAG
Found at i:48221 original size:12 final size:11
Alignment explanation
Indices: 48185--48213 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
48175 CCACCCGTAG
48185 AAACCAGGTAA
1 AAACCAGGTAA
48196 AAACCAGGTAA
1 AAACCAGGTAA
48207 AAACCAG
1 AAACCAG
48214 TTTAAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.55, C:0.21, G:0.17, T:0.07
Consensus pattern (11 bp):
AAACCAGGTAA
Left flanking sequence: Indices 47685 -- 48184
GCGCGAGTGGCTAGCATGGACTAGCGTCCCGCCCCCACTCTGGTCGTCTCCGCTTACACGGTGGC
CTTGGGTCTCACTCTGCGACCAAAATAGCGCAAATGCACCAAGACAACCAACGCCCTACTATAAA
CTAACTCAAGCACCTTCTACCAAAACACGCAACTCGATGCCCCCTCTCTCTTCTTCTGCCCCTAA
TTACCCTATTCCGCCCGTTTTTTCGCCCGGTTTCCCCAAAATTCTCCCCTTTCTCACCGTCTTGT
CCCTACCAATAGCCTCACGCCTATACCCTACGCATACACCCCACGCCTCCACCCAACGCGTGCCG
CCGCAAGTGTCGCAAAACCCCACACCACGCGACCCACGACCCTCGCCGTCGTCCGCACCCCCTTC
CACGCACAACCGAGGCTCTGTGCTAAGCCCTACCGTTCGCAGTAGTGGGCCCACCACGGACCAAA
CACCGGCCCTATACACACGCGTAGAAAACCAAAAACCACCCGTAG
Right flanking sequence: Indices 48214 -- 48713
TTTAAAAAACCACCCCCACCACCACCCCCACCACCATAGCCCACCACCACAGCCCACCACAGCCC
ACCACAGCCCGCAGTAAACCACCCTCTACAATCCCCCTTCGCACTCGTCCTTCCAACTCCCCACA
TCGATCGTGCGACTGGTACGTCAAAAAAGATCTCTAACCGAGACACAAACCAGTCGTCTCTCCAG
CGAGTCTTGCACGCCACACCCACCCACGATGTTTGAGGTGGTGACCACGGGGCTTGCCCTCACAT
GGCTAGTGTACCGGCTAGTCCGTTTGCTTGTGCTCCCGACGGATATCCTGGGCATCGGGCTCGAT
CTCCCACCGATGCCCCAAGTTTGCATAGATGCCATCGGCTCCGACGGCGTGGTGATGCACTGGGA
GGTCTCTGGCGGCGACCAGTACTACGTGGTGCTTGTGGACGGGCTCGAAGTGGCCGCGGTGGCCG
GCAAGAGCCAGTGCCGGCTCCGGAACGTGCCCCGGGACCGTCGGG
Found at i:48242 original size:13 final size:12
Alignment explanation
Indices: 48222--48273 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
48212 AGTTTAAAAA
*
48222 ACCACCCCCACC
1 ACCAACCCCACC
*
48234 ACCACCCCCACC
1 ACCAACCCCACC
*
48246 ACCATAGCCCACC
1 ACCA-ACCCCACC
*
48259 ACCACAGCCCACC
1 ACCA-ACCCCACC
48272 AC
1 AC
48274 AGCCCACCAC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
12 16 0.44
13 20 0.56
ACGTcount: A:0.29, C:0.65, G:0.04, T:0.02
Consensus pattern (12 bp):
ACCAACCCCACC
Left flanking sequence: Indices 47722 -- 48221
CTCTGGTCGTCTCCGCTTACACGGTGGCCTTGGGTCTCACTCTGCGACCAAAATAGCGCAAATGC
ACCAAGACAACCAACGCCCTACTATAAACTAACTCAAGCACCTTCTACCAAAACACGCAACTCGA
TGCCCCCTCTCTCTTCTTCTGCCCCTAATTACCCTATTCCGCCCGTTTTTTCGCCCGGTTTCCCC
AAAATTCTCCCCTTTCTCACCGTCTTGTCCCTACCAATAGCCTCACGCCTATACCCTACGCATAC
ACCCCACGCCTCCACCCAACGCGTGCCGCCGCAAGTGTCGCAAAACCCCACACCACGCGACCCAC
GACCCTCGCCGTCGTCCGCACCCCCTTCCACGCACAACCGAGGCTCTGTGCTAAGCCCTACCGTT
CGCAGTAGTGGGCCCACCACGGACCAAACACCGGCCCTATACACACGCGTAGAAAACCAAAAACC
ACCCGTAGAAACCAGGTAAAAACCAGGTAAAAACCAGTTTAAAAA
Right flanking sequence: Indices 48274 -- 48773
AGCCCACCACAGCCCGCAGTAAACCACCCTCTACAATCCCCCTTCGCACTCGTCCTTCCAACTCC
CCACATCGATCGTGCGACTGGTACGTCAAAAAAGATCTCTAACCGAGACACAAACCAGTCGTCTC
TCCAGCGAGTCTTGCACGCCACACCCACCCACGATGTTTGAGGTGGTGACCACGGGGCTTGCCCT
CACATGGCTAGTGTACCGGCTAGTCCGTTTGCTTGTGCTCCCGACGGATATCCTGGGCATCGGGC
TCGATCTCCCACCGATGCCCCAAGTTTGCATAGATGCCATCGGCTCCGACGGCGTGGTGATGCAC
TGGGAGGTCTCTGGCGGCGACCAGTACTACGTGGTGCTTGTGGACGGGCTCGAAGTGGCCGCGGT
GGCCGGCAAGAGCCAGTGCCGGCTCCGGAACGTGCCCCGGGACCGTCGGGTGTGTGTCGAGGTGG
TGGCGGTCAACGGGGTGCTGGGCTTCCGCACGAAGCTGATGCCCG
Found at i:48259 original size:10 final size:10
Alignment explanation
Indices: 48257--48288 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
48247 CCATAGCCCA
48257 CCACCACAGC
1 CCACCACAGC
48267 CCACCACAGC
1 CCACCACAGC
48277 CCACCACAGC
1 CCACCACAGC
48287 CC
1 CC
48289 GCAGTAAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.28, C:0.62, G:0.09, T:0.00
Consensus pattern (10 bp):
CCACCACAGC
Left flanking sequence: Indices 47757 -- 48256
CTCACTCTGCGACCAAAATAGCGCAAATGCACCAAGACAACCAACGCCCTACTATAAACTAACTC
AAGCACCTTCTACCAAAACACGCAACTCGATGCCCCCTCTCTCTTCTTCTGCCCCTAATTACCCT
ATTCCGCCCGTTTTTTCGCCCGGTTTCCCCAAAATTCTCCCCTTTCTCACCGTCTTGTCCCTACC
AATAGCCTCACGCCTATACCCTACGCATACACCCCACGCCTCCACCCAACGCGTGCCGCCGCAAG
TGTCGCAAAACCCCACACCACGCGACCCACGACCCTCGCCGTCGTCCGCACCCCCTTCCACGCAC
AACCGAGGCTCTGTGCTAAGCCCTACCGTTCGCAGTAGTGGGCCCACCACGGACCAAACACCGGC
CCTATACACACGCGTAGAAAACCAAAAACCACCCGTAGAAACCAGGTAAAAACCAGGTAAAAACC
AGTTTAAAAAACCACCCCCACCACCACCCCCACCACCATAGCCCA
Right flanking sequence: Indices 48289 -- 48788
GCAGTAAACCACCCTCTACAATCCCCCTTCGCACTCGTCCTTCCAACTCCCCACATCGATCGTGC
GACTGGTACGTCAAAAAAGATCTCTAACCGAGACACAAACCAGTCGTCTCTCCAGCGAGTCTTGC
ACGCCACACCCACCCACGATGTTTGAGGTGGTGACCACGGGGCTTGCCCTCACATGGCTAGTGTA
CCGGCTAGTCCGTTTGCTTGTGCTCCCGACGGATATCCTGGGCATCGGGCTCGATCTCCCACCGA
TGCCCCAAGTTTGCATAGATGCCATCGGCTCCGACGGCGTGGTGATGCACTGGGAGGTCTCTGGC
GGCGACCAGTACTACGTGGTGCTTGTGGACGGGCTCGAAGTGGCCGCGGTGGCCGGCAAGAGCCA
GTGCCGGCTCCGGAACGTGCCCCGGGACCGTCGGGTGTGTGTCGAGGTGGTGGCGGTCAACGGGG
TGCTGGGCTTCCGCACGAAGCTGATGCCCGTGTACATCCAGCCCG
Found at i:48283 original size:13 final size:13
Alignment explanation
Indices: 48228--48273 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
48218 AAAAACCACC
*
48228 CCCACCACCAC-C
1 CCCACCACCACAG
*
48240 CCCACCACCATAG
1 CCCACCACCACAG
48253 CCCACCACCACAG
1 CCCACCACCACAG
48266 CCCACCAC
1 CCCACCAC
48274 AGCCCACCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
12 10 0.33
13 20 0.67
ACGTcount: A:0.28, C:0.65, G:0.04, T:0.02
Consensus pattern (13 bp):
CCCACCACCACAG
Left flanking sequence: Indices 47728 -- 48227
TCGTCTCCGCTTACACGGTGGCCTTGGGTCTCACTCTGCGACCAAAATAGCGCAAATGCACCAAG
ACAACCAACGCCCTACTATAAACTAACTCAAGCACCTTCTACCAAAACACGCAACTCGATGCCCC
CTCTCTCTTCTTCTGCCCCTAATTACCCTATTCCGCCCGTTTTTTCGCCCGGTTTCCCCAAAATT
CTCCCCTTTCTCACCGTCTTGTCCCTACCAATAGCCTCACGCCTATACCCTACGCATACACCCCA
CGCCTCCACCCAACGCGTGCCGCCGCAAGTGTCGCAAAACCCCACACCACGCGACCCACGACCCT
CGCCGTCGTCCGCACCCCCTTCCACGCACAACCGAGGCTCTGTGCTAAGCCCTACCGTTCGCAGT
AGTGGGCCCACCACGGACCAAACACCGGCCCTATACACACGCGTAGAAAACCAAAAACCACCCGT
AGAAACCAGGTAAAAACCAGGTAAAAACCAGTTTAAAAAACCACC
Right flanking sequence: Indices 48274 -- 48773
AGCCCACCACAGCCCGCAGTAAACCACCCTCTACAATCCCCCTTCGCACTCGTCCTTCCAACTCC
CCACATCGATCGTGCGACTGGTACGTCAAAAAAGATCTCTAACCGAGACACAAACCAGTCGTCTC
TCCAGCGAGTCTTGCACGCCACACCCACCCACGATGTTTGAGGTGGTGACCACGGGGCTTGCCCT
CACATGGCTAGTGTACCGGCTAGTCCGTTTGCTTGTGCTCCCGACGGATATCCTGGGCATCGGGC
TCGATCTCCCACCGATGCCCCAAGTTTGCATAGATGCCATCGGCTCCGACGGCGTGGTGATGCAC
TGGGAGGTCTCTGGCGGCGACCAGTACTACGTGGTGCTTGTGGACGGGCTCGAAGTGGCCGCGGT
GGCCGGCAAGAGCCAGTGCCGGCTCCGGAACGTGCCCCGGGACCGTCGGGTGTGTGTCGAGGTGG
TGGCGGTCAACGGGGTGCTGGGCTTCCGCACGAAGCTGATGCCCG
Found at i:49962 original size:15 final size:16
Alignment explanation
Indices: 49942--50046 Score: 64
Period size: 15 Copynumber: 6.9 Consensus size: 16
49932 CTAACACCCT
49942 GTTTGAGCCAAAGTC-
1 GTTTGAGCCAAAGTCA
*
49957 GTTTGAGCC-CA---A
1 GTTTGAGCCAAAGTCA
* *
49969 GTTTGAGCCTAA-CCA
1 GTTTGAGCCAAAGTCA
*
49984 GTTTGAGCCTAAG-CA
1 GTTTGAGCCAAAGTCA
* *
49999 GTATGAGCCAAAGTCGCT
1 GTTTGAGCCAAAGT--CA
* *
50017 GTTTGAGCCTAA-CCA
1 GTTTGAGCCAAAGTCA
50032 GTTTGAGCCAAAGTC
1 GTTTGAGCCAAAGTC
50047 GCTGTTCGAA
Statistics
Matches: 70, Mismatches: 11, Indels: 17
0.71 0.11 0.17
Matches are distributed among these distances:
12 9 0.13
13 1 0.01
14 1 0.01
15 47 0.67
16 1 0.01
18 11 0.16
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (16 bp):
GTTTGAGCCAAAGTCA
Left flanking sequence: Indices 49442 -- 49941
CGCCAGGCGGCCGTCGAGCAGACCACGGCGATCCGCCAGGCGCTCGACGGCGGCGACATAGTCCG
GATCGCCCACGCGGCCGAGTTGGGCGACCAGGCGGACCAGGTGGCGGCCGACGAGGAGAAGTGGC
GCCGGGTGTACCGCCAGGAGGTCAAAAAGTACGTGGCCATCTTCCAGAGCCTCGAGTTGGCGCGG
GCGAGCAGAGACCCGGGGTACCGCCCGCAAAAGATCACCGACTACCAGGCCAGCTGCGACTTTGG
CGACCCGTTGCCCAAGAAAAAGTACCAGAAGGGTCTTTCGCCCGAGGGCTACGGTCTGGGCAAGC
GGGTGGCGAGCTACGACGAGGTGTACGGGCAGAACGCGGGCTACGACGCCAGTTTCAGCTTCGAC
GCCAACAGTCTGGGGGTGTTTGACACGCTGGGCACGGGCTACGACCCCGTGGCGCCGATGGCCTC
CGCGCAGTTTGACCCGGTGGGTCAGAGATATGACCCTAACACCCT
Right flanking sequence: Indices 50047 -- 50546
GCTGTTCGAACCCACCCAGTTCGAGCCCGTGGCCTCCGGGCCCAGCCCGTTTGCTCCGAGCATGC
TGGCGGTGCCGCTGGGCTCGCTGAGCTACTTGGAGCCCCAGCGGCTGGCACCCATCTCGGTGTCC
AACCACACGCGGTTCGAGCTGGTGGACGGGCTCCTGTCGCTCGGGTTGGCTCCCTCGGTGGTGTC
GCCCGTGGGGTCGCAGTTTTCGGGCTACGACTGGGTCTACGGCCAGGACGGCACCCCGTTGATGG
CCCAGCAGCTGTCGCTCGCGTCTGCCGAGGTGCTCCAGGCGATCAACTCGCGGCCCCGGTCGCCG
ATTGCCCAGATTCCCATCGGGACCGCGGGTGTCAGGCTGGCGCTGGGCCCCACGGGGGTCCGGCT
GGCGCTGGGGACCATTCTGAGCGTGCACGAGGCGATGAAGCTCTCGCCCGCGCTCGCCCAGCCCA
TCCCGGACCTGCTCGACCTGATCCAGTTGGACCAGGACCTTTTGG
Found at i:50022 original size:33 final size:33
Alignment explanation
Indices: 49984--50052 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
49974 AGCCTAACCA
*
49984 GTTTGAGCCTAAGCAGTATGAGCCAAAGTCGCT
1 GTTTGAGCCTAACCAGTATGAGCCAAAGTCGCT
*
50017 GTTTGAGCCTAACCAGTTTGAGCCAAAGTCGCT
1 GTTTGAGCCTAACCAGTATGAGCCAAAGTCGCT
50050 GTT
1 GTT
50053 CGAACCCACC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (33 bp):
GTTTGAGCCTAACCAGTATGAGCCAAAGTCGCT
Left flanking sequence: Indices 49484 -- 49983
CTCGACGGCGGCGACATAGTCCGGATCGCCCACGCGGCCGAGTTGGGCGACCAGGCGGACCAGGT
GGCGGCCGACGAGGAGAAGTGGCGCCGGGTGTACCGCCAGGAGGTCAAAAAGTACGTGGCCATCT
TCCAGAGCCTCGAGTTGGCGCGGGCGAGCAGAGACCCGGGGTACCGCCCGCAAAAGATCACCGAC
TACCAGGCCAGCTGCGACTTTGGCGACCCGTTGCCCAAGAAAAAGTACCAGAAGGGTCTTTCGCC
CGAGGGCTACGGTCTGGGCAAGCGGGTGGCGAGCTACGACGAGGTGTACGGGCAGAACGCGGGCT
ACGACGCCAGTTTCAGCTTCGACGCCAACAGTCTGGGGGTGTTTGACACGCTGGGCACGGGCTAC
GACCCCGTGGCGCCGATGGCCTCCGCGCAGTTTGACCCGGTGGGTCAGAGATATGACCCTAACAC
CCTGTTTGAGCCAAAGTCGTTTGAGCCCAAGTTTGAGCCTAACCA
Right flanking sequence: Indices 50053 -- 50552
CGAACCCACCCAGTTCGAGCCCGTGGCCTCCGGGCCCAGCCCGTTTGCTCCGAGCATGCTGGCGG
TGCCGCTGGGCTCGCTGAGCTACTTGGAGCCCCAGCGGCTGGCACCCATCTCGGTGTCCAACCAC
ACGCGGTTCGAGCTGGTGGACGGGCTCCTGTCGCTCGGGTTGGCTCCCTCGGTGGTGTCGCCCGT
GGGGTCGCAGTTTTCGGGCTACGACTGGGTCTACGGCCAGGACGGCACCCCGTTGATGGCCCAGC
AGCTGTCGCTCGCGTCTGCCGAGGTGCTCCAGGCGATCAACTCGCGGCCCCGGTCGCCGATTGCC
CAGATTCCCATCGGGACCGCGGGTGTCAGGCTGGCGCTGGGCCCCACGGGGGTCCGGCTGGCGCT
GGGGACCATTCTGAGCGTGCACGAGGCGATGAAGCTCTCGCCCGCGCTCGCCCAGCCCATCCCGG
ACCTGCTCGACCTGATCCAGTTGGACCAGGACCTTTTGGCCCGGC
Found at i:50025 original size:18 final size:18
Alignment explanation
Indices: 50002--50052 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 18
49992 CTAAGCAGTA
50002 TGAGCCAAAGTCGCTGTT
1 TGAGCCAAAGTCGCTGTT
* *
50020 TGAGCCTAA--C-CAGTT
1 TGAGCCAAAGTCGCTGTT
50035 TGAGCCAAAGTCGCTGTT
1 TGAGCCAAAGTCGCTGTT
50053 CGAACCCACC
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
15 12 0.46
16 1 0.04
17 1 0.04
18 12 0.46
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (18 bp):
TGAGCCAAAGTCGCTGTT
Left flanking sequence: Indices 49502 -- 50001
GTCCGGATCGCCCACGCGGCCGAGTTGGGCGACCAGGCGGACCAGGTGGCGGCCGACGAGGAGAA
GTGGCGCCGGGTGTACCGCCAGGAGGTCAAAAAGTACGTGGCCATCTTCCAGAGCCTCGAGTTGG
CGCGGGCGAGCAGAGACCCGGGGTACCGCCCGCAAAAGATCACCGACTACCAGGCCAGCTGCGAC
TTTGGCGACCCGTTGCCCAAGAAAAAGTACCAGAAGGGTCTTTCGCCCGAGGGCTACGGTCTGGG
CAAGCGGGTGGCGAGCTACGACGAGGTGTACGGGCAGAACGCGGGCTACGACGCCAGTTTCAGCT
TCGACGCCAACAGTCTGGGGGTGTTTGACACGCTGGGCACGGGCTACGACCCCGTGGCGCCGATG
GCCTCCGCGCAGTTTGACCCGGTGGGTCAGAGATATGACCCTAACACCCTGTTTGAGCCAAAGTC
GTTTGAGCCCAAGTTTGAGCCTAACCAGTTTGAGCCTAAGCAGTA
Right flanking sequence: Indices 50053 -- 50552
CGAACCCACCCAGTTCGAGCCCGTGGCCTCCGGGCCCAGCCCGTTTGCTCCGAGCATGCTGGCGG
TGCCGCTGGGCTCGCTGAGCTACTTGGAGCCCCAGCGGCTGGCACCCATCTCGGTGTCCAACCAC
ACGCGGTTCGAGCTGGTGGACGGGCTCCTGTCGCTCGGGTTGGCTCCCTCGGTGGTGTCGCCCGT
GGGGTCGCAGTTTTCGGGCTACGACTGGGTCTACGGCCAGGACGGCACCCCGTTGATGGCCCAGC
AGCTGTCGCTCGCGTCTGCCGAGGTGCTCCAGGCGATCAACTCGCGGCCCCGGTCGCCGATTGCC
CAGATTCCCATCGGGACCGCGGGTGTCAGGCTGGCGCTGGGCCCCACGGGGGTCCGGCTGGCGCT
GGGGACCATTCTGAGCGTGCACGAGGCGATGAAGCTCTCGCCCGCGCTCGCCCAGCCCATCCCGG
ACCTGCTCGACCTGATCCAGTTGGACCAGGACCTTTTGGCCCGGC
Found at i:50066 original size:33 final size:33
Alignment explanation
Indices: 49997--50073 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
49987 TGAGCCTAAG
* * * *
49997 CAGTATGAGCCAAAGTCGCTGTTTGAGCCTAAC
1 CAGTTTGAGCCAAAGTCGCTGTTCGAACCCAAC
*
50030 CAGTTTGAGCCAAAGTCGCTGTTCGAACCCACC
1 CAGTTTGAGCCAAAGTCGCTGTTCGAACCCAAC
*
50063 CAGTTCGAGCC
1 CAGTTTGAGCC
50074 CGTGGCCTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (33 bp):
CAGTTTGAGCCAAAGTCGCTGTTCGAACCCAAC
Left flanking sequence: Indices 49497 -- 49996
ACATAGTCCGGATCGCCCACGCGGCCGAGTTGGGCGACCAGGCGGACCAGGTGGCGGCCGACGAG
GAGAAGTGGCGCCGGGTGTACCGCCAGGAGGTCAAAAAGTACGTGGCCATCTTCCAGAGCCTCGA
GTTGGCGCGGGCGAGCAGAGACCCGGGGTACCGCCCGCAAAAGATCACCGACTACCAGGCCAGCT
GCGACTTTGGCGACCCGTTGCCCAAGAAAAAGTACCAGAAGGGTCTTTCGCCCGAGGGCTACGGT
CTGGGCAAGCGGGTGGCGAGCTACGACGAGGTGTACGGGCAGAACGCGGGCTACGACGCCAGTTT
CAGCTTCGACGCCAACAGTCTGGGGGTGTTTGACACGCTGGGCACGGGCTACGACCCCGTGGCGC
CGATGGCCTCCGCGCAGTTTGACCCGGTGGGTCAGAGATATGACCCTAACACCCTGTTTGAGCCA
AAGTCGTTTGAGCCCAAGTTTGAGCCTAACCAGTTTGAGCCTAAG
Right flanking sequence: Indices 50074 -- 50573
CGTGGCCTCCGGGCCCAGCCCGTTTGCTCCGAGCATGCTGGCGGTGCCGCTGGGCTCGCTGAGCT
ACTTGGAGCCCCAGCGGCTGGCACCCATCTCGGTGTCCAACCACACGCGGTTCGAGCTGGTGGAC
GGGCTCCTGTCGCTCGGGTTGGCTCCCTCGGTGGTGTCGCCCGTGGGGTCGCAGTTTTCGGGCTA
CGACTGGGTCTACGGCCAGGACGGCACCCCGTTGATGGCCCAGCAGCTGTCGCTCGCGTCTGCCG
AGGTGCTCCAGGCGATCAACTCGCGGCCCCGGTCGCCGATTGCCCAGATTCCCATCGGGACCGCG
GGTGTCAGGCTGGCGCTGGGCCCCACGGGGGTCCGGCTGGCGCTGGGGACCATTCTGAGCGTGCA
CGAGGCGATGAAGCTCTCGCCCGCGCTCGCCCAGCCCATCCCGGACCTGCTCGACCTGATCCAGT
TGGACCAGGACCTTTTGGCCCGGCCGTACCCGCAGCCGCTGGCGC
Found at i:51299 original size:17 final size:17
Alignment explanation
Indices: 51270--51327 Score: 107
Period size: 17 Copynumber: 3.4 Consensus size: 17
51260 TACGTAGACA
51270 GGAGTATGGGCGTAGAAG
1 GGAGTA-GGGCGTAGAAG
51288 GGAGTAGGGCGTAGAAG
1 GGAGTAGGGCGTAGAAG
51305 GGAGTAGGGCGTAGAAG
1 GGAGTAGGGCGTAGAAG
51322 GGAGTA
1 GGAGTA
51328 AGTGGATAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
17 34 0.85
18 6 0.15
ACGTcount: A:0.29, C:0.05, G:0.52, T:0.14
Consensus pattern (17 bp):
GGAGTAGGGCGTAGAAG
Left flanking sequence: Indices 50770 -- 51269
CACGGGGCTGACGAACATCTGGGCCAGCGAGGAGCAGCGGACGGCGCTGCACAGCCGCAATTTCA
GTGTGAACTCGGGGTGGAAGCATGACATTCGGAGCGACTTTGCGCCGTTTGGCAAGGAGGAGAAA
GAGGATTTATAGACAATAAAGAAGTAGGATGGAGGTGGTTGAAGGGGTGAAGCGTAAAAGGGTGT
TGTTGCGACCCGACTTCAGGGTCAGTAGCCAAGGGGCTGAAGGTACTGTTGGTGAATTTCGAGTC
GTTCTTAGCCATGGTGGATTTCTCACTCAGATCGAAGGGTACGAAATGTGGTTAAAATGGAAATC
GATGGAGATCCCAAGAGTCGGGAGACTCTATTCTGTGTAGTTTAACAGTATCCGGGGAAGTATTT
TATGTAACCAATAAGGTTTACATTCCTGTAACTACCTCGTAGTTGGATGGCTACCGTATTTGGTT
AGATGCATATCCAGGTACTTGGGAGCCAACAGGAGTACGTAGACA
Right flanking sequence: Indices 51328 -- 51827
AGTGGATAGAGCCTAGTTGGTGAAAACGACTATCGCTTCTGGAGATCGTGGAAAGAGTCAAGAAT
GTGGCCATAAGCAGATGCTGCTTTTGGGTAGGTGTTCTTCAGCTCGTTTGTGTCTGGGCCATTGC
CTGAACTCGGTGGGACGGGGATAGTATTGCCATGTTTGTCTTACGGGGAATTTATGGCCATACGT
CGTACCGTTGTGCCCAGTACGGGATCAAAGCCAGGCTAAAAATTGAGATTCTTGGACGTAGCGAA
ACAAGAGTTTCGAGGAATTAATGTGCTTAATGGGTTTCAGTCAGTACTGCTGACAATACACACTT
ATACTTTACATTGCCCAAAAGTTCAGAGCCCTAGCACTTCAATTGTCTCCAATTCTAAGTACTAG
ATAATCATAATTCGTACATTCATTCAATCGTACATTCATACATTCATAATTAACACATTCATACA
CACATTATTTAAAACCGGTTGCCAAAAGGCAACACACTTGGAGGC
Found at i:51320 original size:34 final size:35
Alignment explanation
Indices: 51262--51327 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
51252 AACAGGAGTA
51262 CGTAGACAGGAGTATGGGCGTAGAAGGGAGTAGGG
1 CGTAGACAGGAGTATGGGCGTAGAAGGGAGTAGGG
51297 CGTAGA-AGGGAGTA-GGGCGTAGAAGGGAGTA
1 CGTAGACA-GGAGTATGGGCGTAGAAGGGAGTA
51328 AGTGGATAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
34 18 0.60
35 12 0.40
ACGTcount: A:0.30, C:0.08, G:0.48, T:0.14
Consensus pattern (35 bp):
CGTAGACAGGAGTATGGGCGTAGAAGGGAGTAGGG
Left flanking sequence: Indices 50762 -- 51261
GCGGTCAACACGGGGCTGACGAACATCTGGGCCAGCGAGGAGCAGCGGACGGCGCTGCACAGCCG
CAATTTCAGTGTGAACTCGGGGTGGAAGCATGACATTCGGAGCGACTTTGCGCCGTTTGGCAAGG
AGGAGAAAGAGGATTTATAGACAATAAAGAAGTAGGATGGAGGTGGTTGAAGGGGTGAAGCGTAA
AAGGGTGTTGTTGCGACCCGACTTCAGGGTCAGTAGCCAAGGGGCTGAAGGTACTGTTGGTGAAT
TTCGAGTCGTTCTTAGCCATGGTGGATTTCTCACTCAGATCGAAGGGTACGAAATGTGGTTAAAA
TGGAAATCGATGGAGATCCCAAGAGTCGGGAGACTCTATTCTGTGTAGTTTAACAGTATCCGGGG
AAGTATTTTATGTAACCAATAAGGTTTACATTCCTGTAACTACCTCGTAGTTGGATGGCTACCGT
ATTTGGTTAGATGCATATCCAGGTACTTGGGAGCCAACAGGAGTA
Right flanking sequence: Indices 51328 -- 51827
AGTGGATAGAGCCTAGTTGGTGAAAACGACTATCGCTTCTGGAGATCGTGGAAAGAGTCAAGAAT
GTGGCCATAAGCAGATGCTGCTTTTGGGTAGGTGTTCTTCAGCTCGTTTGTGTCTGGGCCATTGC
CTGAACTCGGTGGGACGGGGATAGTATTGCCATGTTTGTCTTACGGGGAATTTATGGCCATACGT
CGTACCGTTGTGCCCAGTACGGGATCAAAGCCAGGCTAAAAATTGAGATTCTTGGACGTAGCGAA
ACAAGAGTTTCGAGGAATTAATGTGCTTAATGGGTTTCAGTCAGTACTGCTGACAATACACACTT
ATACTTTACATTGCCCAAAAGTTCAGAGCCCTAGCACTTCAATTGTCTCCAATTCTAAGTACTAG
ATAATCATAATTCGTACATTCATTCAATCGTACATTCATACATTCATAATTAACACATTCATACA
CACATTATTTAAAACCGGTTGCCAAAAGGCAACACACTTGGAGGC
Found at i:51761 original size:8 final size:8
Alignment explanation
Indices: 51722--51782 Score: 54
Period size: 8 Copynumber: 7.9 Consensus size: 8
51712 TACTAGATAA
51722 TCATA-AT
1 TCATACAT
*
51729 TCGTACAT
1 TCATACAT
* *
51737 TCATTCAA
1 TCATACAT
*
51745 TCGTACAT
1 TCATACAT
51753 TCATACAT
1 TCATACAT
51761 TCATA-AT
1 TCATACAT
* *
51768 TAACACAT
1 TCATACAT
51776 TCATACA
1 TCATACA
51783 CACATTATTT
Statistics
Matches: 40, Mismatches: 12, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
7 9 0.22
8 31 0.77
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.36
Consensus pattern (8 bp):
TCATACAT
Left flanking sequence: Indices 51222 -- 51721
GTTAGATGCATATCCAGGTACTTGGGAGCCAACAGGAGTACGTAGACAGGAGTATGGGCGTAGAA
GGGAGTAGGGCGTAGAAGGGAGTAGGGCGTAGAAGGGAGTAAGTGGATAGAGCCTAGTTGGTGAA
AACGACTATCGCTTCTGGAGATCGTGGAAAGAGTCAAGAATGTGGCCATAAGCAGATGCTGCTTT
TGGGTAGGTGTTCTTCAGCTCGTTTGTGTCTGGGCCATTGCCTGAACTCGGTGGGACGGGGATAG
TATTGCCATGTTTGTCTTACGGGGAATTTATGGCCATACGTCGTACCGTTGTGCCCAGTACGGGA
TCAAAGCCAGGCTAAAAATTGAGATTCTTGGACGTAGCGAAACAAGAGTTTCGAGGAATTAATGT
GCTTAATGGGTTTCAGTCAGTACTGCTGACAATACACACTTATACTTTACATTGCCCAAAAGTTC
AGAGCCCTAGCACTTCAATTGTCTCCAATTCTAAGTACTAGATAA
Right flanking sequence: Indices 51783 -- 52282
CACATTATTTAAAACCGGTTGCCAAAAGGCAACACACTTGGAGGCGAGCCACTGGCAGAACTAGC
CCACAGCTCACCTACGCTCTGTTTCCGAAGTTTCGTAGGTATGGGCTTGGCATTGAGCCAATTGC
GAGGCGGATCTGAAACGGGCTTGTTACTCATGTCGCGTGCCACCTACGAGACTCCACTACTTAAA
TACCCACCACGCTTGCGGAGCCACTTGCGGTCCCCCCAGCCAATTGCTGGTGATGATCGCGCCCT
CGCAGCCCGTTTGGGTACCTGACGCGGGCTCACAACGGGACCCTTGCTCCCGCGCTCGCAACAGG
CGGCCGCCCCTATTCTTCGGAAAAATTGCTAAAAAAAGCGATAGGGTTGCCGTTAAGAGCCACGG
CAACCAAGGCGACCCAGGGTGTTGGGCTGTTGGGTGAGCCCACGGCGAGAACACGCGATCGCAAC
GGCTGTTTGTAATCAAGAGTCACTAGTGGTAAGCCCCGTCAGCCT
Found at i:54249 original size:22 final size:24
Alignment explanation
Indices: 54224--54274 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 24
54214 GAGGGAGGGG
*
54224 AAGAAGGA-AGTAGAG-GAAGATA
1 AAGAAGGACAGTAGAGAAAAGATA
*
54246 AAG-ATGACAGTAGAGAAAAGATA
1 AAGAAGGACAGTAGAGAAAAGATA
54269 AAGAAG
1 AAGAAG
54275 TAGATGACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
21 3 0.13
22 10 0.43
23 9 0.39
24 1 0.04
ACGTcount: A:0.57, C:0.02, G:0.31, T:0.10
Consensus pattern (24 bp):
AAGAAGGACAGTAGAGAAAAGATA
Left flanking sequence: Indices 53724 -- 54223
CAAGCTGGCATTGTCACCCTGATGGCGATCTGTGCCATTGACGACAACTTTGACAAGATCAAGCA
GGCGCACAAGTATGCGCTGATTGTGGGCAAGTTCTGCACCGACCACGGGATTGCCTTGGAGGGGC
CTGTCGACACCAATTTCGTGTTCATTGACCTCAAGCGCAACGGGATGGATGCAGGGTACCTTGTG
GAGATGGGCCACAAGCACGGGGTCAAGCTTATGGGGGGCCGGATTGCGTTCCACTTCCAGTTGCT
GCTTGAGCTGGTGCACCGGGTGTGCGATGCGATCTTGGAGTGCTACAACTACAACCAGGAGCACC
CGTTTGTCGACGAGGGCAAGAACAACAAGAAGATGTATAATTTTGAGGCGATGCAGCGCCACTTG
GTGTCGCTTTAGCCGGGCCACCATGGTAATAGAAGGCTTAATGATGCATAGAATGACTAGTAATG
AAGGTTATAATGGAGAGATGTAGAGAGAAGAAGTAGAGGGAGGGG
Right flanking sequence: Indices 54275 -- 54774
TAGATGACATATAAATAGATGACATATAAATCCAAATTTACTAATACAGTTGACCTTAAATATAA
AAATGGGTTTTGCATTTAGAAAATGAAGATATATCTGATATCAAAATAAGTACAAAATGTTTCAG
CCCACTGGAACTGTTCGCCAAATATCGAAGAAATAATTTTAAAACTACGGTAAGTTTGTTCGAAA
ACCGATTGAAAAGGGTGAAAGTAGAGGTAGAATGAAGAAGAAAGTAGAGAGAATCTGAAGAAATA
GAGAGAATACGAAGAAGTAGAGGAAAGATGAAGAAGTAGAGAGAATGTGAAGAAGGAAGATGAAA
AGTCACACCTCAAGCTATAGCTAGCTGAAATTGCTCGAGTTGTTATTTGGCTGCAATACGCTATC
TCACATTATCTTTGCTTTCGCATGCAGTTGCAGCCATTGCTACCGTTTTCTGTCAGTTGCTCGTC
CAGCTGACGCATTGGGACATTCTGGTCGGGGTCACGAATACACTT
Found at i:54295 original size:15 final size:15
Alignment explanation
Indices: 54275--54305 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
54265 GATAAAGAAG
54275 TAGATGACATATAAA
1 TAGATGACATATAAA
54290 TAGATGACATATAAA
1 TAGATGACATATAAA
54305 T
1 T
54306 CCAAATTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29
Consensus pattern (15 bp):
TAGATGACATATAAA
Left flanking sequence: Indices 53775 -- 54274
GACAAGATCAAGCAGGCGCACAAGTATGCGCTGATTGTGGGCAAGTTCTGCACCGACCACGGGAT
TGCCTTGGAGGGGCCTGTCGACACCAATTTCGTGTTCATTGACCTCAAGCGCAACGGGATGGATG
CAGGGTACCTTGTGGAGATGGGCCACAAGCACGGGGTCAAGCTTATGGGGGGCCGGATTGCGTTC
CACTTCCAGTTGCTGCTTGAGCTGGTGCACCGGGTGTGCGATGCGATCTTGGAGTGCTACAACTA
CAACCAGGAGCACCCGTTTGTCGACGAGGGCAAGAACAACAAGAAGATGTATAATTTTGAGGCGA
TGCAGCGCCACTTGGTGTCGCTTTAGCCGGGCCACCATGGTAATAGAAGGCTTAATGATGCATAG
AATGACTAGTAATGAAGGTTATAATGGAGAGATGTAGAGAGAAGAAGTAGAGGGAGGGGAAGAAG
GAAGTAGAGGAAGATAAAGATGACAGTAGAGAAAAGATAAAGAAG
Right flanking sequence: Indices 54306 -- 54805
CCAAATTTACTAATACAGTTGACCTTAAATATAAAAATGGGTTTTGCATTTAGAAAATGAAGATA
TATCTGATATCAAAATAAGTACAAAATGTTTCAGCCCACTGGAACTGTTCGCCAAATATCGAAGA
AATAATTTTAAAACTACGGTAAGTTTGTTCGAAAACCGATTGAAAAGGGTGAAAGTAGAGGTAGA
ATGAAGAAGAAAGTAGAGAGAATCTGAAGAAATAGAGAGAATACGAAGAAGTAGAGGAAAGATGA
AGAAGTAGAGAGAATGTGAAGAAGGAAGATGAAAAGTCACACCTCAAGCTATAGCTAGCTGAAAT
TGCTCGAGTTGTTATTTGGCTGCAATACGCTATCTCACATTATCTTTGCTTTCGCATGCAGTTGC
AGCCATTGCTACCGTTTTCTGTCAGTTGCTCGTCCAGCTGACGCATTGGGACATTCTGGTCGGGG
TCACGAATACACTTTTGTGGCGATGGGGTACTTTGGGCGTGTCTC
Found at i:54589 original size:19 final size:19
Alignment explanation
Indices: 54506--54589 Score: 98
Period size: 19 Copynumber: 4.4 Consensus size: 19
54496 GTAGAATGAA
*
54506 GAAGAAAGTAGAGAGAATCT
1 GAAG-AAGTAGAGAGAATGT
* **
54526 GAAGAAATAGAGAGAATAC
1 GAAGAAGTAGAGAGAATGT
*
54545 GAAGAAGTAGAG-GAAAGAT
1 GAAGAAGTAGAGAGAATG-T
54564 GAAGAAGTAGAGAGAATGT
1 GAAGAAGTAGAGAGAATGT
54583 GAAGAAG
1 GAAGAAG
54590 GAAGATGAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
18 3 0.06
19 43 0.80
20 8 0.15
ACGTcount: A:0.52, C:0.02, G:0.33, T:0.12
Consensus pattern (19 bp):
GAAGAAGTAGAGAGAATGT
Left flanking sequence: Indices 54006 -- 54505
TGCGATGCGATCTTGGAGTGCTACAACTACAACCAGGAGCACCCGTTTGTCGACGAGGGCAAGAA
CAACAAGAAGATGTATAATTTTGAGGCGATGCAGCGCCACTTGGTGTCGCTTTAGCCGGGCCACC
ATGGTAATAGAAGGCTTAATGATGCATAGAATGACTAGTAATGAAGGTTATAATGGAGAGATGTA
GAGAGAAGAAGTAGAGGGAGGGGAAGAAGGAAGTAGAGGAAGATAAAGATGACAGTAGAGAAAAG
ATAAAGAAGTAGATGACATATAAATAGATGACATATAAATCCAAATTTACTAATACAGTTGACCT
TAAATATAAAAATGGGTTTTGCATTTAGAAAATGAAGATATATCTGATATCAAAATAAGTACAAA
ATGTTTCAGCCCACTGGAACTGTTCGCCAAATATCGAAGAAATAATTTTAAAACTACGGTAAGTT
TGTTCGAAAACCGATTGAAAAGGGTGAAAGTAGAGGTAGAATGAA
Right flanking sequence: Indices 54590 -- 55089
GAAGATGAAAAGTCACACCTCAAGCTATAGCTAGCTGAAATTGCTCGAGTTGTTATTTGGCTGCA
ATACGCTATCTCACATTATCTTTGCTTTCGCATGCAGTTGCAGCCATTGCTACCGTTTTCTGTCA
GTTGCTCGTCCAGCTGACGCATTGGGACATTCTGGTCGGGGTCACGAATACACTTTTGTGGCGAT
GGGGTACTTTGGGCGTGTCTCAACACAAACTGCCCATGTCGCGCCCGTGACTGGCTGTCATCGGT
CCCAGCCGTGCGTATGCAAAGAACATACGCCACATGTGACGTATGTCGAGAAGCAAGCAACAGAC
GAGGAAACGGAGGGCCAATGGAGCTCCAGACGGCTCTGCGCTTCAATTCCCACACTTTCTATTCA
CTCACCTCTAATCCCTTTCTTTGTTGTCCTCTCCCATCGCCATCTCATCGTCATTGTTACCTCGG
ACTTTTTCTGAGTGACCCCGGAGCTAAGCGAGGCCTGCGCTGGCC
Found at i:56890 original size:26 final size:26
Alignment explanation
Indices: 56851--56900 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
56841 TACGTGGGTT
* *
56851 CCGACACTGTCAATGGTCGAATGGGC
1 CCGACACTGCCAATGGTCAAATGGGC
*
56877 CCGACAGTGCCAATGGTCAAATGG
1 CCGACACTGCCAATGGTCAAATGG
56901 TTTAGTTCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.30, T:0.18
Consensus pattern (26 bp):
CCGACACTGCCAATGGTCAAATGGGC
Left flanking sequence: Indices 56351 -- 56850
GGTTGCCGTACAACTGGATGCAGATTGGTGCGTTCACGTTGATCCAGTTTGGCTACCAGATGCTC
ACGATGTTGCCGTGTCCCATCTGGTTCAAGTACAAGCACGTGTGTGGGTTGTTTGTGTTTTTTGT
CTATGCCTGGGCCTGCTACAACGGGGCCACCTACTACATCGATGTGTTTGGCAAGCGGTTTGAGA
AGGAGGTGGCCAAGTTGAAGAAGGAGATTGCCGAGCTCCAGAACGAGCGCATCCAGTACCTGCCC
ATGCTGCGGCCCGAGCTGATGGTGCTCGAGGAGGAGATCAACCCGATCAACTTGAACGACTCCAA
GGCCCTGGCCACCGGGGTGCAGCGTGCGGAGACGAAATAGAGTAGCTTAGAATTTTTGAGTGTCT
GGTGTCTGAATAATACCCATGCTGTTTGTGGCATCGGTCCCTGGACACACAATAAACGCCGACGA
AATACGAAATGGCTCAGGCCGACAATGCCGATGATTACGTGGGTT
Right flanking sequence: Indices 56901 -- 57400
TTTAGTTCGACAGTGCCAATGGTCACATGGGTTAGTTCGACGGTCAATGGTCACATGGGCTACTT
CTACAGTGGCCAATGTTCGCTTCGGCTACTATGGCAGTGGCCAATGTTCGCATGGGCTACTCTGG
CAATGGCCAATGGTCACATTGGCTACATCGACAGTGGCCAATTCGCATGTACTCTATTTTTAGGT
GTTCGCGACGTCGTCTAACATGCTCGACGTTTCGTAAATACACGCTCTTGGTTTCCCCCGCCTGA
CCACGCTAAATAAACTTACAATCTCCCGCCTGACTACGCTTGATTAACTAATCATCTTGGCTGGG
AACTTCCGTGAATTAGCCCATGTTTCGTATCCAGCTTCCTCCAATTTCAAGGCACTTATCTCTTA
TCGATGTTCTAACCCCGATATGCATTTTTTGCTCCCACTATGTTACACCCGTCACTCAAACCCTA
CCTCCTATCTCCTCCATAACTCCGTTTGCGCTGGCGTGACCCCAT
Found at i:56955 original size:28 final size:30
Alignment explanation
Indices: 56878--56980 Score: 129
Period size: 30 Copynumber: 3.5 Consensus size: 30
56868 CGAATGGGCC
* *
56878 CGACAGTGCCAATGGTCAAATGGTTTAGTT
1 CGACAGTGCCAATGGTCACATGGGTTAGTT
56908 CGACAGTGCCAATGGTCACATGGGTTAGTT
1 CGACAGTGCCAATGGTCACATGGGTTAGTT
* * *
56938 CGAC-G-GTCAATGGTCACATGGGCTACTT
1 CGACAGTGCCAATGGTCACATGGGTTAGTT
*
56966 CTACAGTGGCCAATG
1 CGACAGT-GCCAATG
56981 TTCGCTTCGG
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
29 2 0.03
30 32 0.51
31 6 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (30 bp):
CGACAGTGCCAATGGTCACATGGGTTAGTT
Left flanking sequence: Indices 56378 -- 56877
GTGCGTTCACGTTGATCCAGTTTGGCTACCAGATGCTCACGATGTTGCCGTGTCCCATCTGGTTC
AAGTACAAGCACGTGTGTGGGTTGTTTGTGTTTTTTGTCTATGCCTGGGCCTGCTACAACGGGGC
CACCTACTACATCGATGTGTTTGGCAAGCGGTTTGAGAAGGAGGTGGCCAAGTTGAAGAAGGAGA
TTGCCGAGCTCCAGAACGAGCGCATCCAGTACCTGCCCATGCTGCGGCCCGAGCTGATGGTGCTC
GAGGAGGAGATCAACCCGATCAACTTGAACGACTCCAAGGCCCTGGCCACCGGGGTGCAGCGTGC
GGAGACGAAATAGAGTAGCTTAGAATTTTTGAGTGTCTGGTGTCTGAATAATACCCATGCTGTTT
GTGGCATCGGTCCCTGGACACACAATAAACGCCGACGAAATACGAAATGGCTCAGGCCGACAATG
CCGATGATTACGTGGGTTCCGACACTGTCAATGGTCGAATGGGCC
Right flanking sequence: Indices 56981 -- 57480
TTCGCTTCGGCTACTATGGCAGTGGCCAATGTTCGCATGGGCTACTCTGGCAATGGCCAATGGTC
ACATTGGCTACATCGACAGTGGCCAATTCGCATGTACTCTATTTTTAGGTGTTCGCGACGTCGTC
TAACATGCTCGACGTTTCGTAAATACACGCTCTTGGTTTCCCCCGCCTGACCACGCTAAATAAAC
TTACAATCTCCCGCCTGACTACGCTTGATTAACTAATCATCTTGGCTGGGAACTTCCGTGAATTA
GCCCATGTTTCGTATCCAGCTTCCTCCAATTTCAAGGCACTTATCTCTTATCGATGTTCTAACCC
CGATATGCATTTTTTGCTCCCACTATGTTACACCCGTCACTCAAACCCTACCTCCTATCTCCTCC
ATAACTCCGTTTGCGCTGGCGTGACCCCATCCAGCGTAGTCAAAAGCATATCTCAACCCGCATTT
GCCGCCAGCAATCTTGTCCCAGTGCTATTGTCCTATTGTTAGTCA
Found at i:56993 original size:31 final size:30
Alignment explanation
Indices: 56958--57072 Score: 99
Period size: 31 Copynumber: 3.7 Consensus size: 30
56948 TGGTCACATG
*
56958 GGCTACTTCTACAGTGGCCAATGTTCGCTT
1 GGCTACTTCGACAGTGGCCAATGTTCGCTT
* *
56988 CGGCTACTAT-GGCAGTGGCCAATGTTCGCATG
1 -GGCTACT-TCGACAGTGGCCAATGTTCGC-TT
* * * *
57020 GGCTAC-TCTGGCAATGGCCAATGGTCACATT
1 GGCTACTTC-GACAGTGGCCAATGTTCGC-TT
*
57051 GGCTACATCGACAGTGGCCAAT
1 GGCTACTTCGACAGTGGCCAAT
57073 TCGCATGTAC
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
29 1 0.01
31 65 0.93
32 4 0.06
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (30 bp):
GGCTACTTCGACAGTGGCCAATGTTCGCTT
Left flanking sequence: Indices 56458 -- 56957
TGTGGGTTGTTTGTGTTTTTTGTCTATGCCTGGGCCTGCTACAACGGGGCCACCTACTACATCGA
TGTGTTTGGCAAGCGGTTTGAGAAGGAGGTGGCCAAGTTGAAGAAGGAGATTGCCGAGCTCCAGA
ACGAGCGCATCCAGTACCTGCCCATGCTGCGGCCCGAGCTGATGGTGCTCGAGGAGGAGATCAAC
CCGATCAACTTGAACGACTCCAAGGCCCTGGCCACCGGGGTGCAGCGTGCGGAGACGAAATAGAG
TAGCTTAGAATTTTTGAGTGTCTGGTGTCTGAATAATACCCATGCTGTTTGTGGCATCGGTCCCT
GGACACACAATAAACGCCGACGAAATACGAAATGGCTCAGGCCGACAATGCCGATGATTACGTGG
GTTCCGACACTGTCAATGGTCGAATGGGCCCGACAGTGCCAATGGTCAAATGGTTTAGTTCGACA
GTGCCAATGGTCACATGGGTTAGTTCGACGGTCAATGGTCACATG
Right flanking sequence: Indices 57073 -- 57572
TCGCATGTACTCTATTTTTAGGTGTTCGCGACGTCGTCTAACATGCTCGACGTTTCGTAAATACA
CGCTCTTGGTTTCCCCCGCCTGACCACGCTAAATAAACTTACAATCTCCCGCCTGACTACGCTTG
ATTAACTAATCATCTTGGCTGGGAACTTCCGTGAATTAGCCCATGTTTCGTATCCAGCTTCCTCC
AATTTCAAGGCACTTATCTCTTATCGATGTTCTAACCCCGATATGCATTTTTTGCTCCCACTATG
TTACACCCGTCACTCAAACCCTACCTCCTATCTCCTCCATAACTCCGTTTGCGCTGGCGTGACCC
CATCCAGCGTAGTCAAAAGCATATCTCAACCCGCATTTGCCGCCAGCAATCTTGTCCCAGTGCTA
TTGTCCTATTGTTAGTCAGGTACCAAAAAGGCAGGTGAAAATCCTAACCCTGAATTAGAGCTCTA
AAACAATCTCAAACGCTAAATCAAGCACCGAGTGCCTTAACCTCT
Found at i:57038 original size:62 final size:62
Alignment explanation
Indices: 56945--57079 Score: 145
Period size: 62 Copynumber: 2.2 Consensus size: 62
56935 GTTCGACGGT
* * * * * *
56945 CAATGGTCACATGGGCTACTTCTACAGTGGCCAATGTTCGC-TTCGGCTACTAT-GGCAGTGGC
1 CAATGTTCGCATGGGCTACTTCTACAATGGCCAATGGTCACATT-GGCTAC-ATCGACAGTGGC
*
57007 CAATGTTCGCATGGGCTAC-TCTGGCAATGGCCAATGGTCACATTGGCTACATCGACAGTGGC
1 CAATGTTCGCATGGGCTACTTCT-ACAATGGCCAATGGTCACATTGGCTACATCGACAGTGGC
57069 CAA--TTCGCATG
1 CAATGTTCGCATG
57080 TACTCTATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
60 8 0.13
61 5 0.08
62 48 0.76
63 2 0.03
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (62 bp):
CAATGTTCGCATGGGCTACTTCTACAATGGCCAATGGTCACATTGGCTACATCGACAGTGGC
Left flanking sequence: Indices 56445 -- 56944
GTACAAGCACGTGTGTGGGTTGTTTGTGTTTTTTGTCTATGCCTGGGCCTGCTACAACGGGGCCA
CCTACTACATCGATGTGTTTGGCAAGCGGTTTGAGAAGGAGGTGGCCAAGTTGAAGAAGGAGATT
GCCGAGCTCCAGAACGAGCGCATCCAGTACCTGCCCATGCTGCGGCCCGAGCTGATGGTGCTCGA
GGAGGAGATCAACCCGATCAACTTGAACGACTCCAAGGCCCTGGCCACCGGGGTGCAGCGTGCGG
AGACGAAATAGAGTAGCTTAGAATTTTTGAGTGTCTGGTGTCTGAATAATACCCATGCTGTTTGT
GGCATCGGTCCCTGGACACACAATAAACGCCGACGAAATACGAAATGGCTCAGGCCGACAATGCC
GATGATTACGTGGGTTCCGACACTGTCAATGGTCGAATGGGCCCGACAGTGCCAATGGTCAAATG
GTTTAGTTCGACAGTGCCAATGGTCACATGGGTTAGTTCGACGGT
Right flanking sequence: Indices 57080 -- 57579
TACTCTATTTTTAGGTGTTCGCGACGTCGTCTAACATGCTCGACGTTTCGTAAATACACGCTCTT
GGTTTCCCCCGCCTGACCACGCTAAATAAACTTACAATCTCCCGCCTGACTACGCTTGATTAACT
AATCATCTTGGCTGGGAACTTCCGTGAATTAGCCCATGTTTCGTATCCAGCTTCCTCCAATTTCA
AGGCACTTATCTCTTATCGATGTTCTAACCCCGATATGCATTTTTTGCTCCCACTATGTTACACC
CGTCACTCAAACCCTACCTCCTATCTCCTCCATAACTCCGTTTGCGCTGGCGTGACCCCATCCAG
CGTAGTCAAAAGCATATCTCAACCCGCATTTGCCGCCAGCAATCTTGTCCCAGTGCTATTGTCCT
ATTGTTAGTCAGGTACCAAAAAGGCAGGTGAAAATCCTAACCCTGAATTAGAGCTCTAAAACAAT
CTCAAACGCTAAATCAAGCACCGAGTGCCTTAACCTCTTCTCACC
Found at i:61517 original size:34 final size:32
Alignment explanation
Indices: 61403--61590 Score: 195
Period size: 32 Copynumber: 5.7 Consensus size: 32
61393 AAACGAATAG
* *
61403 AGAGCATATTGGTTGGATTAGTAGTGTATGAAT
1 AGAGCAT-TTGGTTGGTTTAGTAGTATATGAAT
* *
61436 GAAAGAGCATAT-G--GGTTGAGTAGTATATGAAT
1 ---AGAGCATTTGGTTGGTTTAGTAGTATATGAAT
61468 AGAGCATTTGGTTGGTTTAGTAGTATATGAA-
1 AGAGCATTTGGTTGGTTTAGTAGTATATGAAT
* * *
61499 AGAAGAGATTTTGGTTGGTTCAGTGGTATATGAAT
1 AG-AG-CA-TTTGGTTGGTTTAGTAGTATATGAAT
*
61534 AGAGCATTTGGTTGGTTTAATAGTATATGAAT
1 AGAGCATTTGGTTGGTTTAGTAGTATATGAAT
61566 GGAGAGCATTTGGTTGGTTTAGTAG
1 --AGAGCATTTGGTTGGTTTAGTAG
61591 ATTGGATTTG
Statistics
Matches: 129, Mismatches: 14, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
29 8 0.06
30 1 0.01
31 2 0.02
32 58 0.45
33 2 0.02
34 48 0.37
35 3 0.02
36 7 0.05
ACGTcount: A:0.30, C:0.03, G:0.31, T:0.36
Consensus pattern (32 bp):
AGAGCATTTGGTTGGTTTAGTAGTATATGAAT
Left flanking sequence: Indices 60903 -- 61402
GGGCGAGCTCTGCGTGGTGATTGGCAAAACGGGCAAGAACATCAAGGCTGCGGACGCGTTGGACC
ACGTGTTGGCGTACACGGTGGGCAACGACATCCTGGCCCGCACCTGGCAGATGGACCCGGCCCAC
GCGGGTGGGGTTCCCCAGTGGAACTTCTCGAAGCTGTTTGACAACTACGCTCCGTTGGGGCCGCA
GTTGGTGCGGGGCATTGACTCGCTGAACCTCAAGATCGAGACCAGAGTCAACGGTGAGGTGCGCC
AGCTGAGCTCGACCCTGGACTTGTTGTTCTCGGTGGCCCAGATCATCGAGTTTTTGTCCCAGGGG
ACGACGCTCGAGCAGGGCACGGTGATTATGACCGGTACTCCCGAGGGGGTGGGTATGTCGTTCAG
CCCGCCCAAGTGGTTGAGAGACGGCGACAAGGTCGAGGTGGAGATCGAGTCGATTGGGACGCTCG
TCAACGAGATCAAGTTTGAGTAGAACAGGGGTAGTAAACGAATAG
Right flanking sequence: Indices 61591 -- 62090
ATTGGATTTGGGACTTGGTGGTATCCCTACTGCACATCCAATCGGGTTGGTTTTGGTTCAATCGG
GTTGTTATCAGTTCAAACGGTTGGTACTGGCTCAAACGGGTTGAATCGCTCAATCAAGTATTGCT
CGGTTCACACTTCCTTCTCCCAGATCTCGTATTTCGCTCCACCACTCGGCTAATATCCTTAGCCA
CGCCTATATACCCTCCTATTGTGATCAAAGCACATCGCCACCCATTGTTGCCGTGACCGCCCAGG
GGTTCCAAGCACCTCCGTAAACCGCTAAGCCATCTCGACCAACCTAGTCTTGGCGGGCCACAAAG
CCGGACTATGTTTAGGCGTGCTCAAAGAGGGGTCTACACGGGGTAGAAACAATTATAAACTTCAT
TTTAGTTTTTTTAACCTACCTTCCTCTTGTCTACCGCTACACCGTTTGGTCTAGGCCCTTCTCGT
CACATTCCCGTCTTTTTACTCGAATTTCATCTACCAGCCACAATA
Found at i:61545 original size:66 final size:66
Alignment explanation
Indices: 61403--61590 Score: 240
Period size: 66 Copynumber: 2.9 Consensus size: 66
61393 AAACGAATAG
* * * *
61403 AGAGCATATTGGTTGGATTAGTAGTGTATGAATGAAAGAGCATAT-G--GGTTGAGTAGTATATG
1 AGAGCAT-TTGGTTGGTTTAGTAGTATATGAATG-AAGAGCATTTGGTTGGTTCAGTAGTATATG
61465 AAT
64 AAT
* *
61468 AGAGCATTTGGTTGGTTTAGTAGTATATGAAAGAAGAG-ATTTTGGTTGGTTCAGTGGTATATGA
1 AGAGCATTTGGTTGGTTTAGTAGTATATGAATGAAGAGCA-TTTGGTTGGTTCAGTAGTATATGA
61532 AT
65 AT
* * *
61534 AGAGCATTTGGTTGGTTTAATAGTATATGAATGGAGAGCATTTGGTTGGTTTAGTAG
1 AGAGCATTTGGTTGGTTTAGTAGTATATGAATGAAGAGCATTTGGTTGGTTCAGTAG
61591 ATTGGATTTG
Statistics
Matches: 107, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
62 1 0.01
63 7 0.07
64 24 0.22
65 7 0.07
66 67 0.63
67 1 0.01
ACGTcount: A:0.30, C:0.03, G:0.31, T:0.36
Consensus pattern (66 bp):
AGAGCATTTGGTTGGTTTAGTAGTATATGAATGAAGAGCATTTGGTTGGTTCAGTAGTATATGAA
T
Left flanking sequence: Indices 60903 -- 61402
GGGCGAGCTCTGCGTGGTGATTGGCAAAACGGGCAAGAACATCAAGGCTGCGGACGCGTTGGACC
ACGTGTTGGCGTACACGGTGGGCAACGACATCCTGGCCCGCACCTGGCAGATGGACCCGGCCCAC
GCGGGTGGGGTTCCCCAGTGGAACTTCTCGAAGCTGTTTGACAACTACGCTCCGTTGGGGCCGCA
GTTGGTGCGGGGCATTGACTCGCTGAACCTCAAGATCGAGACCAGAGTCAACGGTGAGGTGCGCC
AGCTGAGCTCGACCCTGGACTTGTTGTTCTCGGTGGCCCAGATCATCGAGTTTTTGTCCCAGGGG
ACGACGCTCGAGCAGGGCACGGTGATTATGACCGGTACTCCCGAGGGGGTGGGTATGTCGTTCAG
CCCGCCCAAGTGGTTGAGAGACGGCGACAAGGTCGAGGTGGAGATCGAGTCGATTGGGACGCTCG
TCAACGAGATCAAGTTTGAGTAGAACAGGGGTAGTAAACGAATAG
Right flanking sequence: Indices 61591 -- 62090
ATTGGATTTGGGACTTGGTGGTATCCCTACTGCACATCCAATCGGGTTGGTTTTGGTTCAATCGG
GTTGTTATCAGTTCAAACGGTTGGTACTGGCTCAAACGGGTTGAATCGCTCAATCAAGTATTGCT
CGGTTCACACTTCCTTCTCCCAGATCTCGTATTTCGCTCCACCACTCGGCTAATATCCTTAGCCA
CGCCTATATACCCTCCTATTGTGATCAAAGCACATCGCCACCCATTGTTGCCGTGACCGCCCAGG
GGTTCCAAGCACCTCCGTAAACCGCTAAGCCATCTCGACCAACCTAGTCTTGGCGGGCCACAAAG
CCGGACTATGTTTAGGCGTGCTCAAAGAGGGGTCTACACGGGGTAGAAACAATTATAAACTTCAT
TTTAGTTTTTTTAACCTACCTTCCTCTTGTCTACCGCTACACCGTTTGGTCTAGGCCCTTCTCGT
CACATTCCCGTCTTTTTACTCGAATTTCATCTACCAGCCACAATA
Found at i:63841 original size:40 final size:40
Alignment explanation
Indices: 63796--63874 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
63786 GTTGGGTTGA
63796 AGTGGTTAATATGAGGCAGTTGAGACACATTGTGAGTTTT
1 AGTGGTTAATATGAGGCAGTTGAGACACATTGTGAGTTTT
63836 AGTGGTTAATATGAGGCAGTTGAGACACATTGTGAGTTT
1 AGTGGTTAATATGAGGCAGTTGAGACACATTGTGAGTTT
63875 AATTTGTGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.08, G:0.30, T:0.34
Consensus pattern (40 bp):
AGTGGTTAATATGAGGCAGTTGAGACACATTGTGAGTTTT
Left flanking sequence: Indices 63296 -- 63795
GCCCGGCCACCCCATTCTCCGCGAGGCCATTGCCCAGATCGTCGAGCTGACCCAGCGGCGGGCGC
GGGCCCAGCCCAACCCCGACGACCGGTTGACGTTGCCCGGGAACGCCAACGAAAAGCAGTTGGAG
ATCTCCAAGTGGACGGGGGCCGGGCTCTGGACCGACGTGGTGTTCCACTACTTCAACGACTGGGT
GCTCTCGCTGGTGTTCCAGGCGATGCTGTGGAAGGACTTCCACGGGTTGAAGAAGCCGAAGCTCG
TGCTGGACATCTTGGTGTTGCCCATCAAGCTGTTTGCCCTGGAGGTGGCCATCCCCAAGGACGGC
AAGATTGACGATCCGTTGGCGTTTGTCAAGCACTACTCGGCGGGGATCTGGAAGAACGCTTAGTA
TTTATAGAAGTATGGGATAGAGACACAATTGTTGTAGTGGTATGAGGCTGATGTGAGACACATTG
GGTTGTAGGGGTTACTAAAGGGTGTTGTGAGACTCGTTGGGTTGA
Right flanking sequence: Indices 63875 -- 64374
AATTTGTGGTTACTATGAACCAGTAAGGACTTGAGTCGCAAGTGTGGATTGTAGTAAAAGCTGAT
CTCAGGTTTAATCCTGAGGCAATTAGCTCTTCGGCAAGAGTAGAGAAGCGGCGAATTCAAGAGGT
TCTAAGAGCAGGGAAGTTGTGGAGTATGGGTAAGGGTTCAATAAACAAGATGCAAAAAAGATGTA
TATTGGTTCCCAGATAACTGGAAAATGAGATTTAAAGTAGTAGTTTTGATTCTTTATTTCTTAAT
TGAGTTCTCTTATTGATACGGAATCTCTTGTAATATGGTGAATATGTAGATTACTAGGTACTCCT
GAATTACGATTATTAAATATGTAACGGAGATATGAACTGACTAGAATTATAGAATAGCTAATAGC
GGATTTTTAAGTGAAATTCGTCAAAAAGCAGTTAGTTTTGGAGGTGGAATTGAAATGGGAAAACG
CAAAGAGAGGCACTTTCCAATGCTTTCGCTAACAACTTAATTCCA
Found at i:64740 original size:16 final size:16
Alignment explanation
Indices: 64719--64807 Score: 112
Period size: 16 Copynumber: 5.8 Consensus size: 16
64709 TTTCCAGCGG
*
64719 AGACTGGAGACTACAA
1 AGACTGGAGACTACGA
*
64735 AGACTGGACACTACGA
1 AGACTGGAGACTACGA
* * *
64751 GGACTGGAGACCACAA
1 AGACTGGAGACTACGA
64767 AGACTGGAGACTACGA
1 AGACTGGAGACTACGA
64783 AGACTGGA-A--ACGA
1 AGACTGGAGACTACGA
64796 AGACTGGAGACT
1 AGACTGGAGACT
64808 TGAGTCTCAA
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
13 12 0.20
14 1 0.02
15 1 0.02
16 47 0.77
ACGTcount: A:0.39, C:0.20, G:0.29, T:0.11
Consensus pattern (16 bp):
AGACTGGAGACTACGA
Left flanking sequence: Indices 64219 -- 64718
TGTAACGGAGATATGAACTGACTAGAATTATAGAATAGCTAATAGCGGATTTTTAAGTGAAATTC
GTCAAAAAGCAGTTAGTTTTGGAGGTGGAATTGAAATGGGAAAACGCAAAGAGAGGCACTTTCCA
ATGCTTTCGCTAACAACTTAATTCCAGTGGTAAATATTCCGTTTTTTATAGAGCAAATCCTAGCA
AAGTATCAGTAAATTATCCCAGTATCCAGCACCCCAGTACAGTATTCCAGTCTTGGCTTGATGCA
ACACCTGCGATCCGAGGGTGGTGGACAGAGTCAGCCGTGCTGGTGTGAAAGAAAGCAGAAAAGTA
GGAAAATAGCCACAGCAGAATGCGGCTGGTGTGGGGACGGACTTTGTAATCCCTAAGCCCTCATC
AAGCCATGGCATACGTCATAACTGCAGGTCCCAGAATCGAACAAGTGGAACCACGTCAAAACCAA
AACAAAGACGTCACTAAAGAACGCACAGACAAGATTTTCCAGCGG
Right flanking sequence: Indices 64808 -- 65307
TGAGTCTCAATCTACCTCAATCTGGGAGGCTGTAGACAAATTCTATATTTCCGCCTGTCTTCGTC
CACCCCCTTCGCTTTTCTTGTCCTTATTTGTTTGCCCACTTCTGCATTGACGAGCAGGATGCCTT
AAAAATACCGTGTAAAGAAACCCGGGCCTACCGTTGTTCATGCAAGATCGATAGGCGACTATATA
TGGACCCGGTTCCCCAGAAAAGCGGCCATGGACAGCGACGGGTTCGTGTGGTTTGCAGTGAGCTA
TGGCGACGCCATCCTCGATGTTCTTGTAGTGGCTGCTGTGACCGGGTTCGCCGTGGGAGTAGCAG
CCCACTGGCTCCACATTTGTACGTGTGTGCCGGGCACGGTGGCCGTGGCCGGGCCCGGGCATCCC
ACGGGAGGCTGGCCCTCCCACTGGGAGCTTCCAGACCTGGCGGTCGACGCTTTGGAGTGGCAGGT
CCGGTTCAAACGCCTCGGGGTGTTTCGACGGCCGGCAAATTTTTG
Found at i:64797 original size:13 final size:13
Alignment explanation
Indices: 64779--64803 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64769 ACTGGAGACT
64779 ACGAAGACTGGAA
1 ACGAAGACTGGAA
64792 ACGAAGACTGGA
1 ACGAAGACTGGA
64804 GACTTGAGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.32, T:0.08
Consensus pattern (13 bp):
ACGAAGACTGGAA
Left flanking sequence: Indices 64279 -- 64778
AATTCGTCAAAAAGCAGTTAGTTTTGGAGGTGGAATTGAAATGGGAAAACGCAAAGAGAGGCACT
TTCCAATGCTTTCGCTAACAACTTAATTCCAGTGGTAAATATTCCGTTTTTTATAGAGCAAATCC
TAGCAAAGTATCAGTAAATTATCCCAGTATCCAGCACCCCAGTACAGTATTCCAGTCTTGGCTTG
ATGCAACACCTGCGATCCGAGGGTGGTGGACAGAGTCAGCCGTGCTGGTGTGAAAGAAAGCAGAA
AAGTAGGAAAATAGCCACAGCAGAATGCGGCTGGTGTGGGGACGGACTTTGTAATCCCTAAGCCC
TCATCAAGCCATGGCATACGTCATAACTGCAGGTCCCAGAATCGAACAAGTGGAACCACGTCAAA
ACCAAAACAAAGACGTCACTAAAGAACGCACAGACAAGATTTTCCAGCGGAGACTGGAGACTACA
AAGACTGGACACTACGAGGACTGGAGACCACAAAGACTGGAGACT
Right flanking sequence: Indices 64804 -- 65303
GACTTGAGTCTCAATCTACCTCAATCTGGGAGGCTGTAGACAAATTCTATATTTCCGCCTGTCTT
CGTCCACCCCCTTCGCTTTTCTTGTCCTTATTTGTTTGCCCACTTCTGCATTGACGAGCAGGATG
CCTTAAAAATACCGTGTAAAGAAACCCGGGCCTACCGTTGTTCATGCAAGATCGATAGGCGACTA
TATATGGACCCGGTTCCCCAGAAAAGCGGCCATGGACAGCGACGGGTTCGTGTGGTTTGCAGTGA
GCTATGGCGACGCCATCCTCGATGTTCTTGTAGTGGCTGCTGTGACCGGGTTCGCCGTGGGAGTA
GCAGCCCACTGGCTCCACATTTGTACGTGTGTGCCGGGCACGGTGGCCGTGGCCGGGCCCGGGCA
TCCCACGGGAGGCTGGCCCTCCCACTGGGAGCTTCCAGACCTGGCGGTCGACGCTTTGGAGTGGC
AGGTCCGGTTCAAACGCCTCGGGGTGTTTCGACGGCCGGCAAATT
Found at i:65633 original size:39 final size:40
Alignment explanation
Indices: 65579--65659 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
65569 AACGAGGGGT
*
65579 AGAGGCTACATAGGGT-AATAGGTAACGGAGAATTATAGA
1 AGAGGCTACATAGGGTGAATAGGAAACGGAGAATTATAGA
** **
65618 AGAGGCTGTATAGGGTGAATAGGAAACGGAGGGTTATAGA
1 AGAGGCTACATAGGGTGAATAGGAAACGGAGAATTATAGA
65658 AG
1 AG
65660 CAGGTTGGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 14 0.39
40 22 0.61
ACGTcount: A:0.38, C:0.06, G:0.36, T:0.20
Consensus pattern (40 bp):
AGAGGCTACATAGGGTGAATAGGAAACGGAGAATTATAGA
Left flanking sequence: Indices 65079 -- 65578
TCCTCGATGTTCTTGTAGTGGCTGCTGTGACCGGGTTCGCCGTGGGAGTAGCAGCCCACTGGCTC
CACATTTGTACGTGTGTGCCGGGCACGGTGGCCGTGGCCGGGCCCGGGCATCCCACGGGAGGCTG
GCCCTCCCACTGGGAGCTTCCAGACCTGGCGGTCGACGCTTTGGAGTGGCAGGTCCGGTTCAAAC
GCCTCGGGGTGTTTCGACGGCCGGCAAATTTTTGCATCCACGACGGCCAGTTGCGGGGCGAGGTC
CTCTGTAAGGATTTGACGGTGACCTTGAGCTGTGGGGCGGGCGGGATTACCTATGTGAGTATCCA
CGGGGCGACGTTTGTCTCGGTGTTTCGGTATTGTCCTGCGGTGAAGGCGATGGTGTACCGGGGGG
CCGAGGTGAGGGTGATGAGCCTCGACGAGGTGATGGGGATGGTGGAGAATTGTTTAGTGTGGACC
GAGCCCGGGGGAAGGTGTGGGTGAAGGAAATAGGTAACGAGGGGT
Right flanking sequence: Indices 65660 -- 66159
CAGGTTGGGCGACTCGTAAAGGTGGGCGACTCGTAGAGGGTGGAAGCACCCACGAACCGCCCGAT
GCGCCCTAGAGACACTCTTTTTGGTGAAAGAACCGCTCGATGCGCCCTAGAGACACTTTGTTTGG
AGAAAGAACCGGTCGATGCGTTTTAGACACTTTTTTTGGTGAAATTACCGCTCGATGCGCTCTAG
AGACACTTTGATAAAGCGATCTGGCTGCAAATGGGCTGATACGGCTGCAGACAGGGTACGTGTAG
GGTCTGGACGGTCGCCTTCAGAGTCGGATTAGGCACTAGCACGGACATTACCACGAGGTTAATAG
GCTTTTTATTTGAGCACGAAGGTTATAGGCTCATATCACAGCTTTTTCTCTTGAAAGATGCCTCA
ATGCTCATCTCTGTCTGACTTTTCTTGCTAAATCCGACGTAATTGAAAAAGAGGTGGTCAAAAAC
ACTTGACGCGGAAACCGTCGTCAGCTCAAACGGTCATCGCTAGGA
Found at i:65758 original size:41 final size:40
Alignment explanation
Indices: 65713--65863 Score: 180
Period size: 41 Copynumber: 3.8 Consensus size: 40
65703 AAGCACCCAC
*
65713 GAACCGCCCGATGCGCCCTAGAGACACTCTTTTTGGTGAAA
1 GAACCGCTCGATGCGCCCTAGAGACACT-TTTTTGGTGAAA
*
65754 GAACCGCTCGATGCGCCCTAGAGACACTTTGTTTGGAGAAA
1 GAACCGCTCGATGCGCCCTAGAGACACTTT-TTTGGTGAAA
* * **
65795 GAACCGGTCGATGCG--TTTTAGACACTTTTTTTGGTGAAA
1 GAACCGCTCGATGCGCCCTAGAGACAC-TTTTTTGGTGAAA
** *
65834 TTACCGCTCGATGCGCTCTAGAGACACTTT
1 GAACCGCTCGATGCGCCCTAGAGACACTTT
65864 GATAAAGCGA
Statistics
Matches: 93, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
39 28 0.30
40 8 0.09
41 57 0.61
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.27
Consensus pattern (40 bp):
GAACCGCTCGATGCGCCCTAGAGACACTTTTTTGGTGAAA
Left flanking sequence: Indices 65213 -- 65712
TCCCACTGGGAGCTTCCAGACCTGGCGGTCGACGCTTTGGAGTGGCAGGTCCGGTTCAAACGCCT
CGGGGTGTTTCGACGGCCGGCAAATTTTTGCATCCACGACGGCCAGTTGCGGGGCGAGGTCCTCT
GTAAGGATTTGACGGTGACCTTGAGCTGTGGGGCGGGCGGGATTACCTATGTGAGTATCCACGGG
GCGACGTTTGTCTCGGTGTTTCGGTATTGTCCTGCGGTGAAGGCGATGGTGTACCGGGGGGCCGA
GGTGAGGGTGATGAGCCTCGACGAGGTGATGGGGATGGTGGAGAATTGTTTAGTGTGGACCGAGC
CCGGGGGAAGGTGTGGGTGAAGGAAATAGGTAACGAGGGGTAGAGGCTACATAGGGTAATAGGTA
ACGGAGAATTATAGAAGAGGCTGTATAGGGTGAATAGGAAACGGAGGGTTATAGAAGCAGGTTGG
GCGACTCGTAAAGGTGGGCGACTCGTAGAGGGTGGAAGCACCCAC
Right flanking sequence: Indices 65864 -- 66363
GATAAAGCGATCTGGCTGCAAATGGGCTGATACGGCTGCAGACAGGGTACGTGTAGGGTCTGGAC
GGTCGCCTTCAGAGTCGGATTAGGCACTAGCACGGACATTACCACGAGGTTAATAGGCTTTTTAT
TTGAGCACGAAGGTTATAGGCTCATATCACAGCTTTTTCTCTTGAAAGATGCCTCAATGCTCATC
TCTGTCTGACTTTTCTTGCTAAATCCGACGTAATTGAAAAAGAGGTGGTCAAAAACACTTGACGC
GGAAACCGTCGTCAGCTCAAACGGTCATCGCTAGGACCATCCCAGTGGGCCCGAGAACACGTATG
TCGTCACCAATCGGGACGCCATCGGGATTGGCGTATTTTTCACCCGTTGGGTTCAGCCGTGGTTG
CAAATCCTGCATGTAGTACTTTAGAGCCAAAGGGCATAGCCACGAAAGGTGGGAATACGGTCAAG
CAGGGCAGCGAGAGTCAACCAGGTCCATTATTACAGCGTTTAGAT
Found at i:69475 original size:30 final size:30
Alignment explanation
Indices: 69441--69500 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
69431 ATCCAATAAC
69441 TGGTCAATAGAATTATAAACCACTCCAACA
1 TGGTCAATAGAATTATAAACCACTCCAACA
69471 TGGTCAATAGAATTATAAACCACTCCAACA
1 TGGTCAATAGAATTATAAACCACTCCAACA
69501 CACAATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.23, G:0.10, T:0.23
Consensus pattern (30 bp):
TGGTCAATAGAATTATAAACCACTCCAACA
Left flanking sequence: Indices 68941 -- 69440
TTACGGACTGAAAACAGTATGGATGGTTACAAAAGCCCACACATACAACTACCTCGTCCACGTGT
TGGCTGGTCTCAACACAGGGCCCCTTCCCTGTCCCCCACGAGCCCACGAGCCCACTCGTCATCTC
TCACCCTCCCACCCATTGTCGGGATGCTAGGCGGGTATGTGCACCGAACAATACCGGGAACAATT
GGTAGCGACCACCCGGTGGATGAGATCAATCGGGTGACAGACATTGTCACGCCAGACTAACGCCC
AGCACAATCACGATGAGATCAACGGTGTCTAAGCGGGTAGGGTTGGAAGGACAACCAACGCGAGC
GTTGGAAGGACAAACTGACTACAATCCCACCCACCACCTACGCTAACGATAACTCACGCTAACGA
CCTACTCACCCTAATGACATAGCTAATAGCCTACCTACTTAACCCAATTGTAAGTTCCTGACCCA
CCTAAACTATCAATGGCGCGATTGTACTACACGACATCCAATAAC
Right flanking sequence: Indices 69501 -- 70000
CACAATAAAAAGCCCAGTCAATCCAACCAAGAGCCACAACAACCCACCAAGAAGGCGGTGGGGGG
TCTGGGGGGCGCCGCCTGCGGCCCCCCAGCTGGGACTGGTACTTGTTTTCGCACTGTTCCCCTGG
TCTCTTGCTACCACTATTTCTTCCACTTCTTTCCACCACAGGTGATCATAAACCCATTGGATAGT
CCTAATCAAATCCACCAAGTCCAAAACAGCCAAAACTAATACAACCGCCACAAACACAACCACAA
CCTCCACAACTTCCACAACCTCGACAACCATATCCTCCACAACCACTTAACGCGCCGAAGTAACC
AGAACAGTCACATCCACCACATCCACCACATCCAACAACCTGCAACTTCTCCCAATTCCATACAC
CTTTTTCCAATTTCCTACACTTCTCCCAGTTCCCTACACCCTCTCCAGTTCCCTACATCTTGTGA
TCATAACTCGTTAATTCATTATATACGTCGTGGCGTGTACTCGTG
Found at i:69767 original size:9 final size:9
Alignment explanation
Indices: 69755--69789 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
69745 ACAAACACAA
69755 CCACAACCT
1 CCACAACCT
*
69764 CCACAACTT
1 CCACAACCT
69773 CCACAACCT
1 CCACAACCT
*
69782 CGACAACC
1 CCACAACC
69790 ATATCCTCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.34, C:0.51, G:0.03, T:0.11
Consensus pattern (9 bp):
CCACAACCT
Left flanking sequence: Indices 69255 -- 69754
CCAACGCGAGCGTTGGAAGGACAAACTGACTACAATCCCACCCACCACCTACGCTAACGATAACT
CACGCTAACGACCTACTCACCCTAATGACATAGCTAATAGCCTACCTACTTAACCCAATTGTAAG
TTCCTGACCCACCTAAACTATCAATGGCGCGATTGTACTACACGACATCCAATAACTGGTCAATA
GAATTATAAACCACTCCAACATGGTCAATAGAATTATAAACCACTCCAACACACAATAAAAAGCC
CAGTCAATCCAACCAAGAGCCACAACAACCCACCAAGAAGGCGGTGGGGGGTCTGGGGGGCGCCG
CCTGCGGCCCCCCAGCTGGGACTGGTACTTGTTTTCGCACTGTTCCCCTGGTCTCTTGCTACCAC
TATTTCTTCCACTTCTTTCCACCACAGGTGATCATAAACCCATTGGATAGTCCTAATCAAATCCA
CCAAGTCCAAAACAGCCAAAACTAATACAACCGCCACAAACACAA
Right flanking sequence: Indices 69790 -- 70289
ATATCCTCCACAACCACTTAACGCGCCGAAGTAACCAGAACAGTCACATCCACCACATCCACCAC
ATCCAACAACCTGCAACTTCTCCCAATTCCATACACCTTTTTCCAATTTCCTACACTTCTCCCAG
TTCCCTACACCCTCTCCAGTTCCCTACATCTTGTGATCATAACTCGTTAATTCATTATATACGTC
GTGGCGTGTACTCGTGGCGTGTACTTTGGCGTGTCGTGGCGTGTCGTGGCGTGGCATGGCGTGTA
CTTTGGCGTGTACTCATGGAGTGTACCGTGGCGCCTACACGCCGCCCGCGGCCTGGATGCGGTCC
ACCACCCGCGCCAACTGCGTCAAGTCCGCGGGGGTCAAGAACGCGTGCGCCAGGAGCACCTGCTC
GACAAACAGGTAGTTGTCCAAGTCGGCGACGCTCACCGCGGTGGGCGGCATCACCGCGCCGCCCA
CCACCCGCTGGAGGTGGAGCAACGACGGCCCCGCGTTGAGCGAGT
Found at i:69768 original size:15 final size:15
Alignment explanation
Indices: 69750--69806 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 15
69740 CCGCCACAAA
69750 CACAACCACAACCTC
1 CACAACCACAACCTC
69765 CACAACTTCCACAACCTC
1 CACAA---CCACAACCTC
* * *
69783 GACAACCATATCCTC
1 CACAACCACAACCTC
69798 CACAACCAC
1 CACAACCAC
69807 TTAACGCGCC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
15 20 0.59
18 14 0.41
ACGTcount: A:0.37, C:0.49, G:0.02, T:0.12
Consensus pattern (15 bp):
CACAACCACAACCTC
Left flanking sequence: Indices 69250 -- 69749
GACAACCAACGCGAGCGTTGGAAGGACAAACTGACTACAATCCCACCCACCACCTACGCTAACGA
TAACTCACGCTAACGACCTACTCACCCTAATGACATAGCTAATAGCCTACCTACTTAACCCAATT
GTAAGTTCCTGACCCACCTAAACTATCAATGGCGCGATTGTACTACACGACATCCAATAACTGGT
CAATAGAATTATAAACCACTCCAACATGGTCAATAGAATTATAAACCACTCCAACACACAATAAA
AAGCCCAGTCAATCCAACCAAGAGCCACAACAACCCACCAAGAAGGCGGTGGGGGGTCTGGGGGG
CGCCGCCTGCGGCCCCCCAGCTGGGACTGGTACTTGTTTTCGCACTGTTCCCCTGGTCTCTTGCT
ACCACTATTTCTTCCACTTCTTTCCACCACAGGTGATCATAAACCCATTGGATAGTCCTAATCAA
ATCCACCAAGTCCAAAACAGCCAAAACTAATACAACCGCCACAAA
Right flanking sequence: Indices 69807 -- 70306
TTAACGCGCCGAAGTAACCAGAACAGTCACATCCACCACATCCACCACATCCAACAACCTGCAAC
TTCTCCCAATTCCATACACCTTTTTCCAATTTCCTACACTTCTCCCAGTTCCCTACACCCTCTCC
AGTTCCCTACATCTTGTGATCATAACTCGTTAATTCATTATATACGTCGTGGCGTGTACTCGTGG
CGTGTACTTTGGCGTGTCGTGGCGTGTCGTGGCGTGGCATGGCGTGTACTTTGGCGTGTACTCAT
GGAGTGTACCGTGGCGCCTACACGCCGCCCGCGGCCTGGATGCGGTCCACCACCCGCGCCAACTG
CGTCAAGTCCGCGGGGGTCAAGAACGCGTGCGCCAGGAGCACCTGCTCGACAAACAGGTAGTTGT
CCAAGTCGGCGACGCTCACCGCGGTGGGCGGCATCACCGCGCCGCCCACCACCCGCTGGAGGTGG
AGCAACGACGGCCCCGCGTTGAGCGAGTGCTTCGGGCGGAAGTCG
Found at i:69848 original size:9 final size:9
Alignment explanation
Indices: 69834--69859 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
69824 CCAGAACAGT
69834 CACATCCAC
1 CACATCCAC
69843 CACATCCAC
1 CACATCCAC
69852 CACATCCA
1 CACATCCA
69860 ACAACCTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.54, G:0.00, T:0.12
Consensus pattern (9 bp):
CACATCCAC
Left flanking sequence: Indices 69334 -- 69833
ACTCACCCTAATGACATAGCTAATAGCCTACCTACTTAACCCAATTGTAAGTTCCTGACCCACCT
AAACTATCAATGGCGCGATTGTACTACACGACATCCAATAACTGGTCAATAGAATTATAAACCAC
TCCAACATGGTCAATAGAATTATAAACCACTCCAACACACAATAAAAAGCCCAGTCAATCCAACC
AAGAGCCACAACAACCCACCAAGAAGGCGGTGGGGGGTCTGGGGGGCGCCGCCTGCGGCCCCCCA
GCTGGGACTGGTACTTGTTTTCGCACTGTTCCCCTGGTCTCTTGCTACCACTATTTCTTCCACTT
CTTTCCACCACAGGTGATCATAAACCCATTGGATAGTCCTAATCAAATCCACCAAGTCCAAAACA
GCCAAAACTAATACAACCGCCACAAACACAACCACAACCTCCACAACTTCCACAACCTCGACAAC
CATATCCTCCACAACCACTTAACGCGCCGAAGTAACCAGAACAGT
Right flanking sequence: Indices 69860 -- 70359
ACAACCTGCAACTTCTCCCAATTCCATACACCTTTTTCCAATTTCCTACACTTCTCCCAGTTCCC
TACACCCTCTCCAGTTCCCTACATCTTGTGATCATAACTCGTTAATTCATTATATACGTCGTGGC
GTGTACTCGTGGCGTGTACTTTGGCGTGTCGTGGCGTGTCGTGGCGTGGCATGGCGTGTACTTTG
GCGTGTACTCATGGAGTGTACCGTGGCGCCTACACGCCGCCCGCGGCCTGGATGCGGTCCACCAC
CCGCGCCAACTGCGTCAAGTCCGCGGGGGTCAAGAACGCGTGCGCCAGGAGCACCTGCTCGACAA
ACAGGTAGTTGTCCAAGTCGGCGACGCTCACCGCGGTGGGCGGCATCACCGCGCCGCCCACCACC
CGCTGGAGGTGGAGCAACGACGGCCCCGCGTTGAGCGAGTGCTTCGGGCGGAAGTCGAACTGCAT
GTTGTACTTGTACAACAACTCGATGATGTCATCGACGAGGTGCTG
Found at i:69928 original size:19 final size:19
Alignment explanation
Indices: 69870--69947 Score: 68
Period size: 19 Copynumber: 4.1 Consensus size: 19
69860 ACAACCTGCA
*
69870 ACTTCTCCCAATTCCATAC
1 ACTTCTCCCAATTCCCTAC
* * *
69889 ACCTTTTTCCAATTTCCTAC
1 A-CTTCTCCCAATTCCCTAC
*
69909 ACTTCTCCCAGTTCCCTAC
1 ACTTCTCCCAATTCCCTAC
* *
69928 AC-CCTCTCCAGTTCCCTAC
1 ACTTCTC-CCAATTCCCTAC
69947 A
1 A
69948 TCTTGTGATC
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
18 3 0.06
19 30 0.62
20 15 0.31
ACGTcount: A:0.21, C:0.44, G:0.03, T:0.33
Consensus pattern (19 bp):
ACTTCTCCCAATTCCCTAC
Left flanking sequence: Indices 69370 -- 69869
TAACCCAATTGTAAGTTCCTGACCCACCTAAACTATCAATGGCGCGATTGTACTACACGACATCC
AATAACTGGTCAATAGAATTATAAACCACTCCAACATGGTCAATAGAATTATAAACCACTCCAAC
ACACAATAAAAAGCCCAGTCAATCCAACCAAGAGCCACAACAACCCACCAAGAAGGCGGTGGGGG
GTCTGGGGGGCGCCGCCTGCGGCCCCCCAGCTGGGACTGGTACTTGTTTTCGCACTGTTCCCCTG
GTCTCTTGCTACCACTATTTCTTCCACTTCTTTCCACCACAGGTGATCATAAACCCATTGGATAG
TCCTAATCAAATCCACCAAGTCCAAAACAGCCAAAACTAATACAACCGCCACAAACACAACCACA
ACCTCCACAACTTCCACAACCTCGACAACCATATCCTCCACAACCACTTAACGCGCCGAAGTAAC
CAGAACAGTCACATCCACCACATCCACCACATCCAACAACCTGCA
Right flanking sequence: Indices 69948 -- 70447
TCTTGTGATCATAACTCGTTAATTCATTATATACGTCGTGGCGTGTACTCGTGGCGTGTACTTTG
GCGTGTCGTGGCGTGTCGTGGCGTGGCATGGCGTGTACTTTGGCGTGTACTCATGGAGTGTACCG
TGGCGCCTACACGCCGCCCGCGGCCTGGATGCGGTCCACCACCCGCGCCAACTGCGTCAAGTCCG
CGGGGGTCAAGAACGCGTGCGCCAGGAGCACCTGCTCGACAAACAGGTAGTTGTCCAAGTCGGCG
ACGCTCACCGCGGTGGGCGGCATCACCGCGCCGCCCACCACCCGCTGGAGGTGGAGCAACGACGG
CCCCGCGTTGAGCGAGTGCTTCGGGCGGAAGTCGAACTGCATGTTGTACTTGTACAACAACTCGA
TGATGTCATCGACGAGGTGCTGCAACCGGTCGTGGAAGAACACCTCGATCAAGTCCTCGAGCTGC
GACGCCACCACCTCGGGGTGGTCGTCCAACAGCGCGATCTGGAGG
Found at i:70026 original size:10 final size:10
Alignment explanation
Indices: 69982--70048 Score: 62
Period size: 10 Copynumber: 6.2 Consensus size: 10
69972 CATTATATAC
69982 GTCGTGGCGT
1 GTCGTGGCGT
69992 GTACTCGTGGCGT
1 G---TCGTGGCGT
*
70005 GTACTTTGGCGT
1 GT-C-GTGGCGT
70017 GTCGTGGCGT
1 GTCGTGGCGT
70027 GTCGTGGCGT
1 GTCGTGGCGT
* *
70037 GGCATGGCGT
1 GTCGTGGCGT
70047 GT
1 GT
70049 ACTTTGGCGT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
10 27 0.57
11 2 0.04
12 8 0.17
13 10 0.21
ACGTcount: A:0.04, C:0.19, G:0.45, T:0.31
Consensus pattern (10 bp):
GTCGTGGCGT
Left flanking sequence: Indices 69482 -- 69981
ATTATAAACCACTCCAACACACAATAAAAAGCCCAGTCAATCCAACCAAGAGCCACAACAACCCA
CCAAGAAGGCGGTGGGGGGTCTGGGGGGCGCCGCCTGCGGCCCCCCAGCTGGGACTGGTACTTGT
TTTCGCACTGTTCCCCTGGTCTCTTGCTACCACTATTTCTTCCACTTCTTTCCACCACAGGTGAT
CATAAACCCATTGGATAGTCCTAATCAAATCCACCAAGTCCAAAACAGCCAAAACTAATACAACC
GCCACAAACACAACCACAACCTCCACAACTTCCACAACCTCGACAACCATATCCTCCACAACCAC
TTAACGCGCCGAAGTAACCAGAACAGTCACATCCACCACATCCACCACATCCAACAACCTGCAAC
TTCTCCCAATTCCATACACCTTTTTCCAATTTCCTACACTTCTCCCAGTTCCCTACACCCTCTCC
AGTTCCCTACATCTTGTGATCATAACTCGTTAATTCATTATATAC
Right flanking sequence: Indices 70049 -- 70548
ACTTTGGCGTGTACTCATGGAGTGTACCGTGGCGCCTACACGCCGCCCGCGGCCTGGATGCGGTC
CACCACCCGCGCCAACTGCGTCAAGTCCGCGGGGGTCAAGAACGCGTGCGCCAGGAGCACCTGCT
CGACAAACAGGTAGTTGTCCAAGTCGGCGACGCTCACCGCGGTGGGCGGCATCACCGCGCCGCCC
ACCACCCGCTGGAGGTGGAGCAACGACGGCCCCGCGTTGAGCGAGTGCTTCGGGCGGAAGTCGAA
CTGCATGTTGTACTTGTACAACAACTCGATGATGTCATCGACGAGGTGCTGCAACCGGTCGTGGA
AGAACACCTCGATCAAGTCCTCGAGCTGCGACGCCACCACCTCGGGGTGGTCGTCCAACAGCGCG
ATCTGGAGGTTGAACGTCTTGACGGTGGTGATCAACTGCACGCACCGCTCGGAGAGCCGGCAGAG
GAGGCTCAGGATCTCCGCCAGGGTGTGCAGAAGCGGGTGCAACAC
Found at i:70068 original size:25 final size:22
Alignment explanation
Indices: 69999--70060 Score: 83
Period size: 20 Copynumber: 2.9 Consensus size: 22
69989 CGTGTACTCG
*
69999 TGGCGTGTACTTTGGCGTGTCG
1 TGGCGTGTACTTTGGCGTGTCA
* *
70021 TGGCGTGT-C-GTGGCGTGGCA
1 TGGCGTGTACTTTGGCGTGTCA
70041 TGGCGTGTACTTTGGCGTGT
1 TGGCGTGTACTTTGGCGTGT
70061 ACTCATGGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 16 0.48
21 2 0.06
22 15 0.45
ACGTcount: A:0.05, C:0.18, G:0.44, T:0.34
Consensus pattern (22 bp):
TGGCGTGTACTTTGGCGTGTCA
Left flanking sequence: Indices 69499 -- 69998
CACACAATAAAAAGCCCAGTCAATCCAACCAAGAGCCACAACAACCCACCAAGAAGGCGGTGGGG
GGTCTGGGGGGCGCCGCCTGCGGCCCCCCAGCTGGGACTGGTACTTGTTTTCGCACTGTTCCCCT
GGTCTCTTGCTACCACTATTTCTTCCACTTCTTTCCACCACAGGTGATCATAAACCCATTGGATA
GTCCTAATCAAATCCACCAAGTCCAAAACAGCCAAAACTAATACAACCGCCACAAACACAACCAC
AACCTCCACAACTTCCACAACCTCGACAACCATATCCTCCACAACCACTTAACGCGCCGAAGTAA
CCAGAACAGTCACATCCACCACATCCACCACATCCAACAACCTGCAACTTCTCCCAATTCCATAC
ACCTTTTTCCAATTTCCTACACTTCTCCCAGTTCCCTACACCCTCTCCAGTTCCCTACATCTTGT
GATCATAACTCGTTAATTCATTATATACGTCGTGGCGTGTACTCG
Right flanking sequence: Indices 70061 -- 70560
ACTCATGGAGTGTACCGTGGCGCCTACACGCCGCCCGCGGCCTGGATGCGGTCCACCACCCGCGC
CAACTGCGTCAAGTCCGCGGGGGTCAAGAACGCGTGCGCCAGGAGCACCTGCTCGACAAACAGGT
AGTTGTCCAAGTCGGCGACGCTCACCGCGGTGGGCGGCATCACCGCGCCGCCCACCACCCGCTGG
AGGTGGAGCAACGACGGCCCCGCGTTGAGCGAGTGCTTCGGGCGGAAGTCGAACTGCATGTTGTA
CTTGTACAACAACTCGATGATGTCATCGACGAGGTGCTGCAACCGGTCGTGGAAGAACACCTCGA
TCAAGTCCTCGAGCTGCGACGCCACCACCTCGGGGTGGTCGTCCAACAGCGCGATCTGGAGGTTG
AACGTCTTGACGGTGGTGATCAACTGCACGCACCGCTCGGAGAGCCGGCAGAGGAGGCTCAGGAT
CTCCGCCAGGGTGTGCAGAAGCGGGTGCAACACCTTGGTGGTGGG
Found at i:70821 original size:14 final size:14
Alignment explanation
Indices: 70772--70824 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
70762 TAGCAGACGT
70772 TAGCAAA-GGAGAC
1 TAGCAAATGGAGAC
* * *
70785 TAGTAGAACGGAAAC
1 TAGCA-AATGGAGAC
*
70800 TAGTAAATGGAGAC
1 TAGCAAATGGAGAC
70814 TAGCAAATGGA
1 TAGCAAATGGA
70825 CTAGTTAGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
13 4 0.12
14 19 0.58
15 10 0.30
ACGTcount: A:0.45, C:0.11, G:0.28, T:0.15
Consensus pattern (14 bp):
TAGCAAATGGAGAC
Left flanking sequence: Indices 70272 -- 70771
GCCCCGCGTTGAGCGAGTGCTTCGGGCGGAAGTCGAACTGCATGTTGTACTTGTACAACAACTCG
ATGATGTCATCGACGAGGTGCTGCAACCGGTCGTGGAAGAACACCTCGATCAAGTCCTCGAGCTG
CGACGCCACCACCTCGGGGTGGTCGTCCAACAGCGCGATCTGGAGGTTGAACGTCTTGACGGTGG
TGATCAACTGCACGCACCGCTCGGAGAGCCGGCAGAGGAGGCTCAGGATCTCCGCCAGGGTGTGC
AGAAGCGGGTGCAACACCTTGGTGGTGGGGAACAGCGCGAACTCGCCGTTGAGGAAGTGGGTCAG
GAGCAGCAGGAGACACTCGGCGTGGAACCGTAGCGTCGGGAGCGCCACGGTGGCGCGCGACGGCG
GCTGGGTCCTGGTGATGACAGTAGACATGTGTGTGTGTGTGTGTGTGGGTGCTTGGTGTGTGTGT
GCCAAGCGTGTGCTGAGTGTGTGCTAGGTGTGCTGTAGCAGACGT
Right flanking sequence: Indices 70825 -- 71324
CTAGTTAGAACGGAGGCTAGCGGGTTTCAATCGTGCTGTGCTAGCTGAGTACTGAGAATTCGCTT
ACTGCTAGTCAGTGGTAGCGGGAATTTATAGGCGGAAGTGCGGTGTGCAGCGCCGTGCTAGTGCG
ATGTGCTCTGGTGCCTTAGCGGTAGCTGAAATTTGCAAGTTGCGATGGGATACTACGCGAGGATT
GGGCGTGCGTAGAATGGGTCTCGGGGTGGATCGGTGATCGAGAATGTGTCAAACAGGTCCGTGCG
GTATCGTTCGTCGATCTAAACTTTGGGGACTTTTCCGTATTTAAACACCTTATGGCGCTCAGCGG
CTGCATACCATGCATGCACGGCCTGAGGCGGGTCGGTCGGACGCGATGTTATCAGCAACGGGGCG
CGGAGCCCGCAGGGTGCGTGGGGGTGCACCTGAGCAACCCAGGTGAGATCTAGACGGGTAAACGG
CGACACACACGGCCACCACTGGGCCTGGCACCCCCGCCAGAGCCC
Found at i:71477 original size:12 final size:12
Alignment explanation
Indices: 71459--71505 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
71449 GGTTAAGCGT
71459 GGTCGGGCGTAG
1 GGTCGGGCGTAG
* *
71471 AGTCGGGTGTAG
1 GGTCGGGCGTAG
71483 GGTCGGGCGTAG
1 GGTCGGGCGTAG
71495 GGTCGGGCGTA
1 GGTCGGGCGTA
71506 AAGACTGGTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.11, C:0.15, G:0.55, T:0.19
Consensus pattern (12 bp):
GGTCGGGCGTAG
Left flanking sequence: Indices 70959 -- 71458
GCTCTGGTGCCTTAGCGGTAGCTGAAATTTGCAAGTTGCGATGGGATACTACGCGAGGATTGGGC
GTGCGTAGAATGGGTCTCGGGGTGGATCGGTGATCGAGAATGTGTCAAACAGGTCCGTGCGGTAT
CGTTCGTCGATCTAAACTTTGGGGACTTTTCCGTATTTAAACACCTTATGGCGCTCAGCGGCTGC
ATACCATGCATGCACGGCCTGAGGCGGGTCGGTCGGACGCGATGTTATCAGCAACGGGGCGCGGA
GCCCGCAGGGTGCGTGGGGGTGCACCTGAGCAACCCAGGTGAGATCTAGACGGGTAAACGGCGAC
ACACACGGCCACCACTGGGCCTGGCACCCCCGCCAGAGCCCCGACGTGACCCCGCTTTGGTTCTT
TTTTCTTGGGCTCCCTGATTTGAGCCCGGAAGCCGGTGTTAAGAATAGTTAGTTCGAGACGTGGG
GAAGAGGGGGAAGAATGCAGCGGCTGAAGGGAGGGGGTTAAGCGT
Right flanking sequence: Indices 71506 -- 72005
AAGACTGGTCGGGCTTAGCTGAGCTGGTTTGGGAGTTAACACCACCCAAACGGGACACCAGACCT
GCCCCTAGACCGCCCCTATCGCAACCCACGCTTGGTCTAGCCTAGCCGTTCGCTTGCGCTTGGCG
CACCTCAGCCACAGAGAGGGTTGCTACACGCACCTCTACGGGACACGCACCACGGGACTACGGAC
CACGACGCACCACGACGGCATGGACCACAGCCCCGCGGGCCAAGGGCACTCCGTGGCCCAATACG
AGCTCCAGCCGGCACCACCGCGCGAACAATGTCCGCGTGTCCGACGGGAAGAAATAGGGGTTTAG
TGCTACCGCACCCTGGTCAAGAAAAAGTGAGGGGTAGATCTGGAACATCTATCTGGAGGGGTAAA
ACAGCAAAGCCAACGGCAAACAGAAAGGTGAGTGGTCAGGGGCGCGCAGGCAGGCGTCTCCGCGG
GCTGCCCACGTCGCCGGTGGTGCTGCTGGGTGACACCCTGCTCGC
Found at i:73410 original size:23 final size:23
Alignment explanation
Indices: 73376--73421 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
73366 CAAATGATAT
73376 GAAAGAAACTACAAATGACACAC
1 GAAAGAAACTACAAATGACACAC
* * *
73399 GAAAGAAGCTACGAATGGCACAC
1 GAAAGAAACTACAAATGACACAC
73422 CAGGGTCCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.50, C:0.22, G:0.20, T:0.09
Consensus pattern (23 bp):
GAAAGAAACTACAAATGACACAC
Left flanking sequence: Indices 72876 -- 73375
CAAGTGGAACAAAGTGTTTCAGTAGAGATTGTAGAGTAGCAAGGGTAGAGGTATAGAGAGTAGCT
GTGAGCTCCGTGCTGACAGAAAAGGTGTTGCCAAACCGTTTGATCATGACGAGACTACGATTCCC
TTGTTTCTCTTGCTTCACCCTGCTTGCTGGCTTAGTCGTATCTGCATCCCGCGCAATTCACCACC
CCGTGGTCTCATCGCGCCTGGTGGCTAATTGAGTTGCTCGTTGTGAGGACAATCTGCGAGGTGAT
GTTACGTGGTGGCATTTGGTCTAACCGCAACTATAAAGTGGTTGGGCACTATGTGGTCATGTTAC
GTCATTAGCCACCAGTGGCGATGCGTGCGTTTGCACTCGAACCCGGGCAGTGCGACGATTCGCCA
TATCCTGGTTTTTGTATGGATTTCGGAAAAATCGTGCGGAATATGTAGAAGATGATCCGGAGACC
CGAGTAATGTGGGTGTGCGCAGTGCTAAGGAACTTCAAATGATAT
Right flanking sequence: Indices 73422 -- 73921
CAGGGTCCTATGTTTTTGGACTAGACCACGGGTAAGGACTCAAAGACGGGCCACGTGACCGTCTC
TCGGGCCGTGATCAAACCGGTAGATCAAGGGCGTACACGTACTCACACATCTCTGTTTATCATTA
CGGATTGATTCGACCCAGGTGAGAAACCTAGCGTCAGCAGCCGACTCCGAACTGGCTATCTTCTA
CCTAAAAGGGTTCTACTCTTGAATTACCCCAGCCACTAACGATTCTACTCAAATTCTACATTCTA
TCTCTCGCAAACCCACCCTCCAACCCCTTCATCTATTCCATCCTCACTATTCGTCCCCTACACCT
CTCCCTTCCACCGCCCCCCCAGCTACCACAACGTTCCAGTGGCAATTATACTCCTGCCTGCACAC
AGCCACGCACACCCCAGCCTTAACCTCGATACCAAGACTCCGTCCACAACCACCTCAGACATCGC
CCATGACGTTAGCGGATCTTATCAACGGGGTGTTTGGGCGCAACC
Found at i:75250 original size:24 final size:24
Alignment explanation
Indices: 75217--75273 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
75207 ACGACCCTAA
75217 TGCA-TTACGGCGATTACGACGGG
1 TGCATTTACGGCGATTACGACGGG
75240 TGCATTTACGGCGATTACGACGGG
1 TGCATTTACGGCGATTACGACGGG
75264 TGCATTTACG
1 TGCATTTACG
75274 AATGGCATTC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 4 0.12
24 29 0.88
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (24 bp):
TGCATTTACGGCGATTACGACGGG
Left flanking sequence: Indices 74717 -- 75216
TGTCCCAGGTGCTCAAGCGCCAGCAGGACTTGTCGTACCAGCAGCTGTTGCAGCAGGACCGGCTC
AAGAAGTTGCATCGCGAGCGCAAGCAGGCCGAGGACCAGTGGTTGCGCTACCAGGCCCACCACCG
GTTCGCCCGTGACGACGCGTCGGGAGCCCGCATCGCCGTCAAATTTAGCGACGGCTCGCGCAAAC
AGGTGGTGATGGACGGCGAGCGCAAGGTCGAGGACCTCTACACGTACGTGGAGTTGGTGAACCGG
GGCTTGCTTGGCACGGCCACGCTGGAGATGAGCGAGACGCAGTTTACCAGCAAGTTCCACAACTT
TACGATGCACTACGGGTTCACGTTGGTGCTGGCGGTCCCGCCACGCGTCCTGTTGAACGAGCACC
GCGACGAGGCCATCAGCGAGGTGCCGGCCATCTACCCGCTGGGCATGTTGATGGTCGAACAGGAG
TAAGTGTGACGGCTCGCCCGTCGTCTGTTGTCCTGACGACCCTAA
Right flanking sequence: Indices 75274 -- 75773
AATGGCATTCTCGGTAACCGCATTCCTTCGGGTGCTCGTCTATCGGTCGGTCACGACCTAACCAA
AACAAACATGAAACGAGCTTCCACGTAGGGATGCGGCAGAGGTCACGCGGGAACAGACCCAATAG
GCAGGGCTTGGGTTTCCTTGTTGCGTCGGAGTTGTTGACGCGCCTACAGATGAGGAGAGTCTAGA
CCAGCCATTCCACGGTCTACTAGGCCCATCCATGGTCTACTGGGCCAGTCCATATGGTCTAGGCC
CATTCCTATCGGGCCAGGCCATTCCATGGTATACTGGGCCAGCCATTCCATGGTCTAGGCCAGTC
CATTCCGTGTCTACTATATACAACTACGTATACCACCCAGCGTGGTTCTGAGTCAATGAAACGTT
AATGATTTATTAGTTATGTGTCGATGCCAACCCAGCCTGGGGCTAGAGTCCCCTTCGTCCCTACT
TCGTCACTTTGTTCTCCTTCTTCTTCTTCTTCTGGGTCTGTTTCA
Found at i:75505 original size:20 final size:20
Alignment explanation
Indices: 75477--75514 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
75467 GACCAGCCAT
75477 TCCACGGTCTACTAGGCCCA
1 TCCACGGTCTACTAGGCCCA
* *
75497 TCCATGGTCTACTGGGCC
1 TCCACGGTCTACTAGGCC
75515 AGTCCATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.37, G:0.24, T:0.24
Consensus pattern (20 bp):
TCCACGGTCTACTAGGCCCA
Left flanking sequence: Indices 74977 -- 75476
GGCTTGCTTGGCACGGCCACGCTGGAGATGAGCGAGACGCAGTTTACCAGCAAGTTCCACAACTT
TACGATGCACTACGGGTTCACGTTGGTGCTGGCGGTCCCGCCACGCGTCCTGTTGAACGAGCACC
GCGACGAGGCCATCAGCGAGGTGCCGGCCATCTACCCGCTGGGCATGTTGATGGTCGAACAGGAG
TAAGTGTGACGGCTCGCCCGTCGTCTGTTGTCCTGACGACCCTAATGCATTACGGCGATTACGAC
GGGTGCATTTACGGCGATTACGACGGGTGCATTTACGAATGGCATTCTCGGTAACCGCATTCCTT
CGGGTGCTCGTCTATCGGTCGGTCACGACCTAACCAAAACAAACATGAAACGAGCTTCCACGTAG
GGATGCGGCAGAGGTCACGCGGGAACAGACCCAATAGGCAGGGCTTGGGTTTCCTTGTTGCGTCG
GAGTTGTTGACGCGCCTACAGATGAGGAGAGTCTAGACCAGCCAT
Right flanking sequence: Indices 75515 -- 76014
AGTCCATATGGTCTAGGCCCATTCCTATCGGGCCAGGCCATTCCATGGTATACTGGGCCAGCCAT
TCCATGGTCTAGGCCAGTCCATTCCGTGTCTACTATATACAACTACGTATACCACCCAGCGTGGT
TCTGAGTCAATGAAACGTTAATGATTTATTAGTTATGTGTCGATGCCAACCCAGCCTGGGGCTAG
AGTCCCCTTCGTCCCTACTTCGTCACTTTGTTCTCCTTCTTCTTCTTCTTCTGGGTCTGTTTCAA
CCCCACCATGCCGTCTCGAAGCACACCGATGTAGGTGGCCCAGAACTCTTCCATCTGGGGAGCCT
CGACCACGGTCGAAAGCTTCTTTTTGCCCAGTTTGTCGCCGCGCTTGGTCCCGTTCATCGTCACC
CGCACAAGCACCGGGTACGTGGTGGTGTTCTCCGGAGCCAGCGGCTCGCCCTTGACCACGTTCAG
CGCCAAGTCGCCGAGCGGGTGGGTGCTGGGCTCGACCTCGGCCAC
Found at i:75520 original size:20 final size:20
Alignment explanation
Indices: 75472--75521 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
75462 GTCTAGACCA
*
75472 GCCATTCCACGGTCTACTAGG
1 GCCA-TCCATGGTCTACTAGG
*
75493 CCCATCCATGGTCTACT-GG
1 GCCATCCATGGTCTACTAGG
75512 GCCAGTCCAT
1 GCCA-TCCAT
75522 ATGGTCTAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 5 0.20
20 17 0.68
21 3 0.12
ACGTcount: A:0.18, C:0.36, G:0.22, T:0.24
Consensus pattern (20 bp):
GCCATCCATGGTCTACTAGG
Left flanking sequence: Indices 74972 -- 75471
ACCGGGGCTTGCTTGGCACGGCCACGCTGGAGATGAGCGAGACGCAGTTTACCAGCAAGTTCCAC
AACTTTACGATGCACTACGGGTTCACGTTGGTGCTGGCGGTCCCGCCACGCGTCCTGTTGAACGA
GCACCGCGACGAGGCCATCAGCGAGGTGCCGGCCATCTACCCGCTGGGCATGTTGATGGTCGAAC
AGGAGTAAGTGTGACGGCTCGCCCGTCGTCTGTTGTCCTGACGACCCTAATGCATTACGGCGATT
ACGACGGGTGCATTTACGGCGATTACGACGGGTGCATTTACGAATGGCATTCTCGGTAACCGCAT
TCCTTCGGGTGCTCGTCTATCGGTCGGTCACGACCTAACCAAAACAAACATGAAACGAGCTTCCA
CGTAGGGATGCGGCAGAGGTCACGCGGGAACAGACCCAATAGGCAGGGCTTGGGTTTCCTTGTTG
CGTCGGAGTTGTTGACGCGCCTACAGATGAGGAGAGTCTAGACCA
Right flanking sequence: Indices 75522 -- 76021
ATGGTCTAGGCCCATTCCTATCGGGCCAGGCCATTCCATGGTATACTGGGCCAGCCATTCCATGG
TCTAGGCCAGTCCATTCCGTGTCTACTATATACAACTACGTATACCACCCAGCGTGGTTCTGAGT
CAATGAAACGTTAATGATTTATTAGTTATGTGTCGATGCCAACCCAGCCTGGGGCTAGAGTCCCC
TTCGTCCCTACTTCGTCACTTTGTTCTCCTTCTTCTTCTTCTTCTGGGTCTGTTTCAACCCCACC
ATGCCGTCTCGAAGCACACCGATGTAGGTGGCCCAGAACTCTTCCATCTGGGGAGCCTCGACCAC
GGTCGAAAGCTTCTTTTTGCCCAGTTTGTCGCCGCGCTTGGTCCCGTTCATCGTCACCCGCACAA
GCACCGGGTACGTGGTGGTGTTCTCCGGAGCCAGCGGCTCGCCCTTGACCACGTTCAGCGCCAAG
TCGCCGAGCGGGTGGGTGCTGGGCTCGACCTCGGCCACGAGCCGT
Found at i:75611 original size:21 final size:21
Alignment explanation
Indices: 75545--75604 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 21
75535 ATTCCTATCG
*
75545 GGCCAGGCCATTCCATGGTATACTG
1 GGCCA-GCCATTCCATGG--T-CTA
75570 GGCCAGCCATTCCATGGTCTA
1 GGCCAGCCATTCCATGGTCTA
75591 GGCCAGTCCATTCC
1 GGCCAG-CCATTCC
75605 GTGTCTACTA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
21 8 0.24
22 8 0.24
24 12 0.36
25 5 0.15
ACGTcount: A:0.18, C:0.33, G:0.25, T:0.23
Consensus pattern (21 bp):
GGCCAGCCATTCCATGGTCTA
Left flanking sequence: Indices 75045 -- 75544
GATGCACTACGGGTTCACGTTGGTGCTGGCGGTCCCGCCACGCGTCCTGTTGAACGAGCACCGCG
ACGAGGCCATCAGCGAGGTGCCGGCCATCTACCCGCTGGGCATGTTGATGGTCGAACAGGAGTAA
GTGTGACGGCTCGCCCGTCGTCTGTTGTCCTGACGACCCTAATGCATTACGGCGATTACGACGGG
TGCATTTACGGCGATTACGACGGGTGCATTTACGAATGGCATTCTCGGTAACCGCATTCCTTCGG
GTGCTCGTCTATCGGTCGGTCACGACCTAACCAAAACAAACATGAAACGAGCTTCCACGTAGGGA
TGCGGCAGAGGTCACGCGGGAACAGACCCAATAGGCAGGGCTTGGGTTTCCTTGTTGCGTCGGAG
TTGTTGACGCGCCTACAGATGAGGAGAGTCTAGACCAGCCATTCCACGGTCTACTAGGCCCATCC
ATGGTCTACTGGGCCAGTCCATATGGTCTAGGCCCATTCCTATCG
Right flanking sequence: Indices 75605 -- 76104
GTGTCTACTATATACAACTACGTATACCACCCAGCGTGGTTCTGAGTCAATGAAACGTTAATGAT
TTATTAGTTATGTGTCGATGCCAACCCAGCCTGGGGCTAGAGTCCCCTTCGTCCCTACTTCGTCA
CTTTGTTCTCCTTCTTCTTCTTCTTCTGGGTCTGTTTCAACCCCACCATGCCGTCTCGAAGCACA
CCGATGTAGGTGGCCCAGAACTCTTCCATCTGGGGAGCCTCGACCACGGTCGAAAGCTTCTTTTT
GCCCAGTTTGTCGCCGCGCTTGGTCCCGTTCATCGTCACCCGCACAAGCACCGGGTACGTGGTGG
TGTTCTCCGGAGCCAGCGGCTCGCCCTTGACCACGTTCAGCGCCAAGTCGCCGAGCGGGTGGGTG
CTGGGCTCGACCTCGGCCACGAGCCGTTTCTGGGTGAGGTACACCAGGGACTTCCCGTTGTTATC
GGCCAAAAGCGACCCGACCTGGGAAAGGAACTCGCTGTTGTCAAG
Found at i:78734 original size:11 final size:11
Alignment explanation
Indices: 78718--78762 Score: 72
Period size: 11 Copynumber: 4.1 Consensus size: 11
78708 GTAATACACG
78718 GAAGAAAGAGA
1 GAAGAAAGAGA
78729 GAAGAAAGAGA
1 GAAGAAAGAGA
*
78740 AAAGAAAGAGA
1 GAAGAAAGAGA
*
78751 GAAGCAAGAGA
1 GAAGAAAGAGA
78762 G
1 G
78763 GTGGCGTTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.62, C:0.02, G:0.36, T:0.00
Consensus pattern (11 bp):
GAAGAAAGAGA
Left flanking sequence: Indices 78218 -- 78717
CGGGCGGGTGCTCGCGGGGTTTTTGAGCGACTACATCCACAAGACCCACGGGTACTCGCGGCTCT
GGTTGTCGGTGCTCACGTGCTTCACGTTGGCGCTGGGCCAGTTGATCCTGGCGGTCAACGTGGCC
GACCCGTTCTGGCTTTCGGTGGCGCTGACGTTGATTGGGTGCAGTTACGGGCTCGTGTTTGGCAC
CTACCCGGCGGTGATTGCCGACCAGTTTGGCACGCGGACGTTCTCGACCACCTGGGGTCTCACCT
GTGTGGGCCCGTTCTTTACGCTTTTCGTGCTCAACAAGGTGTTTGGCTGGATCTACGACGCCCAC
GCCGTGGACGGGGTGTGCGAGTTGGGCAACGGGTGCTACAAGCCGGTGTTCCAGGGCAGTTTTGC
GCTCTGTTTCGTGATGTTGGTTGTGACGGTCTACGTGATCTACGCCCGGAGAACGTTGCCAAGCC
GTTGATTAGAGCATAGAATATAATTCAGGTAATCGGTAATACACG
Right flanking sequence: Indices 78763 -- 79262
GTGGCGTTGGGGCCTGCATGCCACCGGGTTCGGGCCGTTGGGGGCCGCAGCGGGGAGATGTCCGA
GAAAAGAAGGCGACAAGAGGGGTCTCAGACATTATTTTGGTCTACCCCGCTGTGGGCTCAATTAT
CGGGTTATTCCTTGATTTTGTGTTTGACGTGCATAAAAAATAACCGGTAGCGGCAAGGGAGGGAC
GAAGGAAAGCGGTTACAAGGCACGTTTGAGAGAAGTCCCAGTGAGCTACGGTTGAGTTAATTCGG
GGGTATTCTTTCAGATTTTTAGTGGACTCTTCGGGATAATCCGACGGCGAAAGGCGTGCCAATCG
CTCAAAACGCTCTAATTTCCCCTCGTTTTAGCCCGCATATTCGCCGTTACCATTGTGCGGGCAAA
CAGGGATCGTTTTACTTGACCGAGACGGACTGAAGTGGTGCTCAGTGAGAGATATCCGTGCTTAT
GGAGCGCAACAATGGGTTGCAGATAAACGTGGACCTCGTAAACAC
Found at i:79561 original size:19 final size:19
Alignment explanation
Indices: 79539--79618 Score: 90
Period size: 19 Copynumber: 4.2 Consensus size: 19
79529 CAACACCGGT
*
79539 AACCACCTGATCCACCGTC
1 AACCACCTGATACACCGTC
79558 AACCACCTGATACACCGTC
1 AACCACCTGATACACCGTC
* **
79577 AACCACCTGGTACCACCGAA
1 AACCACCTGATA-CACCGTC
* *
79597 AACCTCCTGATAC-CTGTC
1 AACCACCTGATACACCGTC
79615 AACC
1 AACC
79619 CCCAGACCAC
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
18 6 0.12
19 30 0.59
20 15 0.29
ACGTcount: A:0.30, C:0.42, G:0.11, T:0.16
Consensus pattern (19 bp):
AACCACCTGATACACCGTC
Left flanking sequence: Indices 79039 -- 79538
TTTTAGTGGACTCTTCGGGATAATCCGACGGCGAAAGGCGTGCCAATCGCTCAAAACGCTCTAAT
TTCCCCTCGTTTTAGCCCGCATATTCGCCGTTACCATTGTGCGGGCAAACAGGGATCGTTTTACT
TGACCGAGACGGACTGAAGTGGTGCTCAGTGAGAGATATCCGTGCTTATGGAGCGCAACAATGGG
TTGCAGATAAACGTGGACCTCGTAAACACCCTTCTATTTCACTGAGTTCTATTTGCTACGCAACT
TTTCTTTAAAAGTCATTCTGAAGGTCTCAAATCTACACTTATGAATACACTGCCACCTGAATTCT
CCAATGTTCACAGCAAACCCTTTTCAGCTTACTTTATCGCTACCTCTCCTCTTCACCGACCAAAG
CCACCTCGCTTCCCGAAAGGGTATTTTGCAACCACGTCACAAACCACAACCCGCGAGAAAACCTT
CAAAGTTGCACCGAAGGCACGCGGTGACACAAACACAACACCGGT
Right flanking sequence: Indices 79619 -- 80118
CCCAGACCACCGCTAACCCTCAGATACCACCTAACTACCTGATAACACCAATAACCCCCTGATCC
ACGTCAACCACCTTCAACCCCCAGAAACCACTCTCAACCCCAGATACCACCTTAACCACCACCCA
CCACCCTCCCTCAACCACCTCCATTCTTTCATATCATCATGATTACTATATACATTAATCCACAG
TGTTGACTCTCTCCAACTCGATCCCCTGCAACTGGGTCTTCTCGGCAGCAATCTTGTGGTGGAGC
CCCGAGAAGTAAGCGTAACTGGTGTTGGCATCCGCGATCTCCTTCTCCAACTTTTCTTTTTGCGC
CTTGCGCTTGTCCAAGCTCGTCTGGAAGTTGGCGTGCACCTGGCGGGCCGGGTAGTTCAACACCT
CGCGCACCTCCTTCGCGGTTCTCGTGGCGTTGGCGTGCGGGTACTCCATCGAGTGGATCTGCCGC
TTGAGCTTGCGGGCGACGTTGCGCGGGTACGCCGCGGGAATGTCG
Found at i:79582 original size:38 final size:39
Alignment explanation
Indices: 79531--79618 Score: 101
Period size: 38 Copynumber: 2.3 Consensus size: 39
79521 CACAAACACA
**
79531 ACACCGGT-AACCACCTGAT-CCACCGTCAACCACCTGAT
1 ACACC-GTCAACCACCTGATACCACCGAAAACCACCTGAT
* *
79569 ACACCGTCAACCACCTGGTACCACCGAAAACCTCCTGAT
1 ACACCGTCAACCACCTGATACCACCGAAAACCACCTGAT
*
79608 AC-CTGTCAACC
1 ACACCGTCAACC
79619 CCCAGACCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
37 2 0.05
38 23 0.53
39 18 0.42
ACGTcount: A:0.30, C:0.42, G:0.12, T:0.16
Consensus pattern (39 bp):
ACACCGTCAACCACCTGATACCACCGAAAACCACCTGAT
Left flanking sequence: Indices 79031 -- 79530
TTTCAGATTTTTAGTGGACTCTTCGGGATAATCCGACGGCGAAAGGCGTGCCAATCGCTCAAAAC
GCTCTAATTTCCCCTCGTTTTAGCCCGCATATTCGCCGTTACCATTGTGCGGGCAAACAGGGATC
GTTTTACTTGACCGAGACGGACTGAAGTGGTGCTCAGTGAGAGATATCCGTGCTTATGGAGCGCA
ACAATGGGTTGCAGATAAACGTGGACCTCGTAAACACCCTTCTATTTCACTGAGTTCTATTTGCT
ACGCAACTTTTCTTTAAAAGTCATTCTGAAGGTCTCAAATCTACACTTATGAATACACTGCCACC
TGAATTCTCCAATGTTCACAGCAAACCCTTTTCAGCTTACTTTATCGCTACCTCTCCTCTTCACC
GACCAAAGCCACCTCGCTTCCCGAAAGGGTATTTTGCAACCACGTCACAAACCACAACCCGCGAG
AAAACCTTCAAAGTTGCACCGAAGGCACGCGGTGACACAAACACA
Right flanking sequence: Indices 79619 -- 80118
CCCAGACCACCGCTAACCCTCAGATACCACCTAACTACCTGATAACACCAATAACCCCCTGATCC
ACGTCAACCACCTTCAACCCCCAGAAACCACTCTCAACCCCAGATACCACCTTAACCACCACCCA
CCACCCTCCCTCAACCACCTCCATTCTTTCATATCATCATGATTACTATATACATTAATCCACAG
TGTTGACTCTCTCCAACTCGATCCCCTGCAACTGGGTCTTCTCGGCAGCAATCTTGTGGTGGAGC
CCCGAGAAGTAAGCGTAACTGGTGTTGGCATCCGCGATCTCCTTCTCCAACTTTTCTTTTTGCGC
CTTGCGCTTGTCCAAGCTCGTCTGGAAGTTGGCGTGCACCTGGCGGGCCGGGTAGTTCAACACCT
CGCGCACCTCCTTCGCGGTTCTCGTGGCGTTGGCGTGCGGGTACTCCATCGAGTGGATCTGCCGC
TTGAGCTTGCGGGCGACGTTGCGCGGGTACGCCGCGGGAATGTCG
Found at i:79714 original size:20 final size:20
Alignment explanation
Indices: 79689--79740 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
79679 GATCCACGTC
79689 AACCACCTTCAACCCCCAGA
1 AACCACCTTCAACCCCCAGA
79709 AACCA-CTCTCAA-CCCCAGA
1 AACCACCT-TCAACCCCCAGA
*
79728 TACCACCTT-AACC
1 AACCACCTTCAACC
79741 ACCACCCACC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 2 0.07
19 15 0.54
20 11 0.39
ACGTcount: A:0.35, C:0.48, G:0.04, T:0.13
Consensus pattern (20 bp):
AACCACCTTCAACCCCCAGA
Left flanking sequence: Indices 79189 -- 79688
GGTGCTCAGTGAGAGATATCCGTGCTTATGGAGCGCAACAATGGGTTGCAGATAAACGTGGACCT
CGTAAACACCCTTCTATTTCACTGAGTTCTATTTGCTACGCAACTTTTCTTTAAAAGTCATTCTG
AAGGTCTCAAATCTACACTTATGAATACACTGCCACCTGAATTCTCCAATGTTCACAGCAAACCC
TTTTCAGCTTACTTTATCGCTACCTCTCCTCTTCACCGACCAAAGCCACCTCGCTTCCCGAAAGG
GTATTTTGCAACCACGTCACAAACCACAACCCGCGAGAAAACCTTCAAAGTTGCACCGAAGGCAC
GCGGTGACACAAACACAACACCGGTAACCACCTGATCCACCGTCAACCACCTGATACACCGTCAA
CCACCTGGTACCACCGAAAACCTCCTGATACCTGTCAACCCCCAGACCACCGCTAACCCTCAGAT
ACCACCTAACTACCTGATAACACCAATAACCCCCTGATCCACGTC
Right flanking sequence: Indices 79741 -- 80240
ACCACCCACCACCCTCCCTCAACCACCTCCATTCTTTCATATCATCATGATTACTATATACATTA
ATCCACAGTGTTGACTCTCTCCAACTCGATCCCCTGCAACTGGGTCTTCTCGGCAGCAATCTTGT
GGTGGAGCCCCGAGAAGTAAGCGTAACTGGTGTTGGCATCCGCGATCTCCTTCTCCAACTTTTCT
TTTTGCGCCTTGCGCTTGTCCAAGCTCGTCTGGAAGTTGGCGTGCACCTGGCGGGCCGGGTAGTT
CAACACCTCGCGCACCTCCTTCGCGGTTCTCGTGGCGTTGGCGTGCGGGTACTCCATCGAGTGGA
TCTGCCGCTTGAGCTTGCGGGCGACGTTGCGCGGGTACGCCGCGGGAATGTCGCTCACGAGGTAC
CACAGCGTCACCGCCACCGCCCCGATCGCCAACGGCACCGCCACGTACTTGACGGTGCGCGCCAG
CATCATCGACGACGCCTGCACGAGCTTCGACACCACCGCGCCGGC
Found at i:82925 original size:10 final size:9
Alignment explanation
Indices: 82907--82941 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
82897 TGGCCAAATA
*
82907 GTGAAAAGG
1 GTGAAAAAG
82916 GTGAAAAAG
1 GTGAAAAAG
82925 GTGAAAAAG
1 GTGAAAAAG
82934 GTGAAAAA
1 GTGAAAAA
82942 TGGCAGGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.54, C:0.00, G:0.34, T:0.11
Consensus pattern (9 bp):
GTGAAAAAG
Left flanking sequence: Indices 82407 -- 82906
GTTGTTTGATCCAGTGGCGTGGTATGTATGCGATGGGTTGTGTGCAGGGGTGGATCCCTGGTGAG
GAGACCGGGCGCCATGGGCGTGGACGGGCTCAGTGGGGAGGCCGGGGGGATGGCGGGCTATCTAT
CTGCGTTTCGGGTGGCGAAAGGGGGGATTAGACGACGGGTGGTGCGTCCGTGTTGTGGTCACGCC
CGGGTGGTGTGCGCTTACCCGATCGGGATGGGTGGGAACGGGTGGACCAAGGTGAGGTGGGGAGG
TGGGATGGCCGGAATGGGCGGGTTTAAGTCGGGCGAAGAGGTGTGGTGTAGCGGATGGTACGTGG
ATGCAGTGGGGTCGTACGTGGTTATACCCGAGGCTGTTGGGGTGAAATTGTCACATATTTACGAA
CGATCGACGCTATTGTCCCAAGGCCATCGAAAGGCTTTGATGGAATTGGAAACAAGCGACCAAGA
CGCGTAACGCGGGGTAGAGAATCAGTTAATGACCGTGGCCAAATA
Right flanking sequence: Indices 82942 -- 83441
TGGCAGGTGTTTGAGAGGTGGAATCTAGTGAGATGTTTTTGAAAAGTATCTCGGAGCTGCTTTCA
CTACCTTTATCAGATACAAGCTTGTCATCGGACTACAAGCCTGATACTAGTCGGTTTCGTGATCT
TGTTTTGAGGTGTTCAGGTGTGGTTTAAGCCTAAGATCGGCATTTCCAGGCCATTGCTGACTCCA
ACATTCAATCTACACAGAAGATTGGGACACTGGGAAACATCTCTATCATCATCTCTATCAACATA
TCTATCAAATACTTATATACCATTATATCTTTTTTCCCATAAATACCTCCTTTCCTACAGCTTGG
TCCCTTGCCGACTACAGTAGTCATGCCGTGTGCCGGAAATAAACGTCTGGTCCTGGCTGCAAAAA
GTTTCGAAAAATCACCCAGTAGTTAGACCAGCCGTAAGGCTGACTGCACTCTACAAACCAAAAGG
ATCGCATTCTTGGTTTCCAGTGTCCTGTAGCCCTCTGTTTTGCGT
Found at i:83191 original size:12 final size:12
Alignment explanation
Indices: 83172--83209 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
83162 GACACTGGGA
83172 AACATCTCTATC
1 AACATCTCTATC
*
83184 ATCATCTCTATC
1 AACATCTCTATC
*
83196 AACATATCTATC
1 AACATCTCTATC
83208 AA
1 AA
83210 ATACTTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (12 bp):
AACATCTCTATC
Left flanking sequence: Indices 82672 -- 83171
TGGCCGGAATGGGCGGGTTTAAGTCGGGCGAAGAGGTGTGGTGTAGCGGATGGTACGTGGATGCA
GTGGGGTCGTACGTGGTTATACCCGAGGCTGTTGGGGTGAAATTGTCACATATTTACGAACGATC
GACGCTATTGTCCCAAGGCCATCGAAAGGCTTTGATGGAATTGGAAACAAGCGACCAAGACGCGT
AACGCGGGGTAGAGAATCAGTTAATGACCGTGGCCAAATAGTGAAAAGGGTGAAAAAGGTGAAAA
AGGTGAAAAATGGCAGGTGTTTGAGAGGTGGAATCTAGTGAGATGTTTTTGAAAAGTATCTCGGA
GCTGCTTTCACTACCTTTATCAGATACAAGCTTGTCATCGGACTACAAGCCTGATACTAGTCGGT
TTCGTGATCTTGTTTTGAGGTGTTCAGGTGTGGTTTAAGCCTAAGATCGGCATTTCCAGGCCATT
GCTGACTCCAACATTCAATCTACACAGAAGATTGGGACACTGGGA
Right flanking sequence: Indices 83210 -- 83709
ATACTTATATACCATTATATCTTTTTTCCCATAAATACCTCCTTTCCTACAGCTTGGTCCCTTGC
CGACTACAGTAGTCATGCCGTGTGCCGGAAATAAACGTCTGGTCCTGGCTGCAAAAAGTTTCGAA
AAATCACCCAGTAGTTAGACCAGCCGTAAGGCTGACTGCACTCTACAAACCAAAAGGATCGCATT
CTTGGTTTCCAGTGTCCTGTAGCCCTCTGTTTTGCGTCGTATGAGGTGGTAGTAACATGGTGGTA
CTAAATTCAAAGCAACCCTCCACGTGACGTTATCGACGGTGGGACCACCGCCAGAATAGGACCAC
GACATTGTCGAACCACAAAGAAAGCACATATATAACGAGCTTCAGCCGTTTGTAGCGACCACCCC
TAAACCATGGACACCATTACTGTGGAAATTCTCGCGAGCCGGTGGGAGCAGGCGGACTTACGCGA
TACCCGAGTGTTGCCCCTTGAATCCAAGTTGACCACCGACGTTCT
Found at i:85720 original size:11 final size:11
Alignment explanation
Indices: 85693--85724 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
85683 TGCTGGCGTG
85693 GAGTCGGTGCT
1 GAGTCGGTGCT
85704 --GTCGGTGCT
1 GAGTCGGTGCT
85713 GAGTCGGTGCT
1 GAGTCGGTGCT
85724 G
1 G
85725 TGGTAGTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.47
11 10 0.53
ACGTcount: A:0.06, C:0.19, G:0.47, T:0.28
Consensus pattern (11 bp):
GAGTCGGTGCT
Left flanking sequence: Indices 85193 -- 85692
GTGCCCATGGGTGAGCAGCTGGACAAGAAGGCCTACTTGGTGATTGTGGCTTCGCTGGACCCCAA
CCTGGACCAGAAGTTGCCTGACCCCAAGCTGGTGAAGGCTTTTGTGTGCCGCGGCAACCAGGGTG
TCACCTACGGTGCCGGCACCTGGCACGCACCCATGGTGGTGATTGACGAGAAGATCGACCACATC
GACTTTGGGGTGATGATCTACGAGAACGGCGTCGACGGCGAGGACTGCCAGGAGGTGTACTTTGA
GCCGGGCTACAAGATTGAGTACGCCAAGGTGGAGTAAGGTTCTGGGACGGGTCCTGGAGACCCTT
GTGCATATATATAGACAGTAATAGAATGCATGGATAAATGGATGTGGTGAGTAGGAAGGTTGGTA
AACTACAGTGGATGGGAAGGAGTGGAAAGATCCAAACGGATTTGAGAAAGGGAACGGTGGGGTTG
TGTTTTTTGGATGGCGTGACCCGGTGCCGGTGCTGTGCTGGCGTG
Right flanking sequence: Indices 85725 -- 86224
TGGTAGTGTGGTTGCACAAGCCAAGTTATTTGAAACAGACGCGTAGAGGAGGGGGTTCTGTAACA
ACGTCAGCAACATTGTGATAGCTTTGGGCTCGAAGTAACACCCAAGGTGCATGGCTAATCTCAAA
CACTAACCCGTAGCAAGGTGCTCGCACCTAGATGAAATTGAGCACGTCCTCCACCACGCTCTTGG
CGTACTTTTCCTTCTGCTTCTGGTCCATCCCCTCCATCGCCAGCCGGGCAAGGTTGAGTTTGTCA
AACACCTTGGTCAAGTCGAAGTTGGTGTCGACATCGTGGCGGGTGGAGGCACTGCTTTGGGCACG
GGGCCCGGGTGCGGGGTTGGTGTGTTCCCGTGGTGCGTCCCCTCCGTCCTCCTCCTTCTTGTCGT
GCGTGCGCGAGGATCCTCCTCTCCCGATCCCGCTTGTGTCGATCCCGGCCTCCTCCGTCAACCGC
TCGGTCATCTCGCCGGCCCGGTTGAACCGCACCAGCTCGTAGTTC
Done.