Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold95
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 128531
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Found at i:17678 original size:6 final size:6
Alignment explanation
Indices: 17669--17778 Score: 139
Period size: 6 Copynumber: 18.3 Consensus size: 6
17659 GCAACTGCAA
* * * *
17669 CAAGCC CAAGCG CACGCC CAAGCG CAAGCC CAAGCC CAAGCC CAAGCG
1 CAAGCC CAAGCC CAAGCC CAAGCC CAAGCC CAAGCC CAAGCC CAAGCC
* * * *
17717 CAAGCC CAAGCC CAAGCG CAAGCC CAAGCG CAAGCC CAAGCG CAAGCG
1 CAAGCC CAAGCC CAAGCC CAAGCC CAAGCC CAAGCC CAAGCC CAAGCC
*
17765 CAAGCA CAAGCC CA
1 CAAGCC CAAGCC CA
17779 GGCCGATGCC
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 89 1.00
ACGTcount: A:0.34, C:0.44, G:0.23, T:0.00
Consensus pattern (6 bp):
CAAGCC
Left flanking sequence: Indices 17169 -- 17668
TCCTGGAGATTTCAGCTGGTGGTGGCGCTCTGGTCAATTCGATTACCGCGTCGCCGGTAGGTGCC
GGTAACGATGCGAATTCGCCAAGTTTCTCACCAAGTTTATATGGTGATCACTCCAAACTGTACAA
CGGAGGACAAGCCCCTTCTCAAGAAAATTTCCACGCAGTAGGGCTGCTGCCTGCGCGTTCTCCAT
TCCGTGCACAAGGTTTGGGGGTGAATTTGTCGCAGGCTCCTCCTGCTCCGGGCTTTGGAGCTCCT
CCTTCTGTGGGGTCAGCGCAACTGCCTTTTGGCACTCCGCTGTCTTCTTTTAACAACAACCAACC
ACTGTTTGGAGTGGCTCAAAGTTCGTTTGAGAACCAGCCTATGTTCGGGGTTGCACAGCTCGAAC
AGCAACATCAAGAAGCGGCAGCAGCTAGAAGGTTAGCCGAACAACAGCGTGTAGCGGAGCAAAAG
AGAACCGAAGAAGCTCACCAACGTGAATTGGCAACGCAACTGCAA
Right flanking sequence: Indices 17779 -- 18278
GGCCGATGCCCATCAACGCGCTCAACAGCTTGCTCAACATACAACACTGTCTCAGCTGTTGCAGG
CTCTGACTCATAGGGTTCCCCCGAATGCAGGTATTCCACAAGTGACAATGGCTTCTGCACCGGCG
CCCACCGGCATGTCGTCAAACTATGTTTACTTCAGTCGTCAGCCTCAACTGCTCACCAAAGAAAC
CCAGGATCGGGCCGCCGGTATTAAGCTCAAGATCGAGAATTACTACAACCTTTGTGTGCTGCACG
CTGTTGAGCGTAACCAACGCCGGGTGCAATTAGAACAGCAACTTGCTCTGGAAGAACTGCATGCT
CTGGAAGAACGCAAAAACCGTCAATTGCAGAATTTGGGTAGAAAAGAGCTGCAATTTTTGCGATT
GAGACGCACCAAGTTGGCACTTGAGGATTTCACGACCGTTAAGGTCATCGGGAAAGGTGCCTTCG
GAGAAGTAAGACTTGTACAGAAGCGTGACACCGGTAAAATTTACG
Found at i:18094 original size:21 final size:18
Alignment explanation
Indices: 18082--18117 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
18072 AACAGCAACT
18082 TGCTCTGGAAGAACTGC-A
1 TGCTCTGGAAGAAC-GCAA
18100 TGCTCTGGAAGAACGCAA
1 TGCTCTGGAAGAACGCAA
18118 AAACCGTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 15 0.88
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (18 bp):
TGCTCTGGAAGAACGCAA
Left flanking sequence: Indices 17582 -- 18081
GCTAGAAGGTTAGCCGAACAACAGCGTGTAGCGGAGCAAAAGAGAACCGAAGAAGCTCACCAACG
TGAATTGGCAACGCAACTGCAACAAGCCCAAGCGCACGCCCAAGCGCAAGCCCAAGCCCAAGCCC
AAGCGCAAGCCCAAGCCCAAGCGCAAGCCCAAGCGCAAGCCCAAGCGCAAGCGCAAGCACAAGCC
CAGGCCGATGCCCATCAACGCGCTCAACAGCTTGCTCAACATACAACACTGTCTCAGCTGTTGCA
GGCTCTGACTCATAGGGTTCCCCCGAATGCAGGTATTCCACAAGTGACAATGGCTTCTGCACCGG
CGCCCACCGGCATGTCGTCAAACTATGTTTACTTCAGTCGTCAGCCTCAACTGCTCACCAAAGAA
ACCCAGGATCGGGCCGCCGGTATTAAGCTCAAGATCGAGAATTACTACAACCTTTGTGTGCTGCA
CGCTGTTGAGCGTAACCAACGCCGGGTGCAATTAGAACAGCAACT
Right flanking sequence: Indices 18118 -- 18617
AAACCGTCAATTGCAGAATTTGGGTAGAAAAGAGCTGCAATTTTTGCGATTGAGACGCACCAAGT
TGGCACTTGAGGATTTCACGACCGTTAAGGTCATCGGGAAAGGTGCCTTCGGAGAAGTAAGACTT
GTACAGAAGCGTGACACCGGTAAAATTTACGCAATGAAGACGTTGCTTAAGCTGGAAATGTTCAA
GAAAGATCAGTTGGCGCACGTGAAAGCAGAGCGTGACGTGCTTGCTGGACTGGATTCTCCTTGGG
TAGTCTCCCTCTACTATCTGTTTCAAGATGCGCAATATTTGTATCTTATTATGGAATTCTTACCT
GGCGGTGACCTTATGACCATGTTGATCAGGTGGCAAATATTCACAGAAGATATCACCCGTTTTTA
CATGGCTGAGTGTGTTTTAGCTATCGAGGCTATTCACAAGCTTGGCTTTATTCACCGTGATATCA
AGCCTGATAATATACTCATTGATATTAGGGGTCACATCAAATTAT
Found at i:39428 original size:12 final size:12
Alignment explanation
Indices: 39411--39438 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
39401 TTGCGCGACG
39411 GGGCTGCTTGCT
1 GGGCTGCTTGCT
39423 GGGCTGCTTGCT
1 GGGCTGCTTGCT
39435 GGGC
1 GGGC
39439 CTGAAGCTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.25, G:0.46, T:0.29
Consensus pattern (12 bp):
GGGCTGCTTGCT
Left flanking sequence: Indices 38911 -- 39410
TTCCAGCAGCGACGTCGACGTTGCCAGCGCCGCCGAGCCCGTCAGCGGGTGCTTTTTGCGCAGCT
GGCTGTGCTGGCGCCGCTTCAACGCCAACAACTCCTCCTGCTGCCGGCGCAACTGGGCCTCGTGC
TGCTGGATGCGCACGTCGAGGTCCGGCAGCACCGGCGGCTCGTCGTCGTCGCCAAACCCGCTGCC
CACGTAGTACCCGTTGTCGTGGCCGCGTTGCTTGAGGTCGTGCCGCACCTGGGTCTCCATGGGCG
CTGCTTCGTACTCGGGGTAGTTTGAGGTGAGCTTGAAGCTGAAGTCGCCGTCGTCGTCGTCGTCG
TCCGGCCGCTCGGGCTCGCGCGGCGCGGTGGCTGCGGGTGCTGGGTGGTCGTTCTTGGTGAGCGA
CTCCTTGAACTCGTTGATCTCCGACCGGAGCAAGTCGAGGTTCTGCGAGAGCTGCGCGGTGCGCT
GGTTGCCCGTGGCGTACGGGTACATCGCCTGCTTGTTGCGCGACG
Right flanking sequence: Indices 39439 -- 39938
CTGAAGCTGGTTGTCCCAGCCCTGGTACCCGCCCATCTGCCGCGATTGCGACGGCTTCGCGTGCT
GCTGCGGCAGCTTGTGCGCCCCTGGCTGTTGAGGCAGCGTCTGCATGTGGCCCTGCTGCGGCTGG
CCCTTGTGCCACCCCTGGCTCGGGTAGGGGCCCTGGGACTGCTTGCTGGGCATCTTTTGCACCGG
CTGCGCCTGCGGGTAGTGCTTTTGGTACGGGTGGTGTGCCACTTGCTGGTGCTGGGGGTACTGTT
GGTGAACCTGCTGTTGCGGCTGCGGCTGGCGGATGTACGGCTGCTGGCGCTGGCCGCGCGGCTGG
ATCTGGTGGCCCTGGAGCTGCGGCAGCCGCGGCGGCTGCTGGTTGCCGGGCGGCAGCTTTTGCTG
GTGGCGCGGCCGCTGCTGATGCTGATGCTGTGGTTGATGCTGATGCTGGTAGGGGTGCTGCGGCG
CTGGCTGCGGCGCCTGGCCCGCCATCGGGCCCGCCGGGCTCGGTT
Found at i:61715 original size:9 final size:9
Alignment explanation
Indices: 61703--61729 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
61693 TCCTCCTGCT
61703 GGTGGCATG
1 GGTGGCATG
61712 GGTGGCATG
1 GGTGGCATG
61721 GGTGGCATG
1 GGTGGCATG
61730 CCTGGTATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.56, T:0.22
Consensus pattern (9 bp):
GGTGGCATG
Left flanking sequence: Indices 61203 -- 61702
AGTTGTCCGGTGGTGTTGCCGTGATCAAGGTTGGTGGTACCTCTGAGGTTGAGGTTGGCGAGAAG
AAGGACCGTTACGACGACGCCCTCAACGCCACCCGTGCTGCCGTGCAGGAGGGCATCCTCCCTGG
TGGTGGTACTGCTCTCATCAAGGCTTCGAGAACTCTTGACGAGGTTGCCAAGAACGCTGCCAACT
TTGACCAGAAGTTGGGTGTTGAGATCATCAAGAAGGCCATTGCCAAGCCCGCCACCCGCATCATC
GAGAACGCCGGTGAGGAGGGTGCCGTCATTGTTGGCAAGATCAGAGACGCCGAGGACTTCAACCT
TGGTTACAACTCTGCCAAGGGCGAGTTCACCGACATGATCGCCGCCGGTATCATTGACCCCTTCA
AGGTTGTCAAGAACGGTTTGGTTGACGCCTCGGGTGTTGCCTCGTTGTTGGCCACCACCGAGTGC
GCCATCGTCGACGTTCCTGAGCCCAAGGGCCCTGCTCCTCCTGCT
Right flanking sequence: Indices 61730 -- 62229
CCTGGTATGTTCTAAGCGACGCTGAAAATCCGTGTAAATAGTAATGAATAGAAACAGCAGCTAAT
TCTAGACTATATATAAGAACTGAAGGATCAGGCGGGAGGCGAGGGTTCCAGCTGGTCGGGTGGGG
GCTTGCGGCGCGGTCGCGACGGGTGGAACTGCTGTTCAAGCGGCGAGTCGGGCACAATCGTGTCG
TCGGCAACCGGTACAAACGGTGGGGTGTGCATCAAATCCTCGGCCCCCGACTCATTGGAGTACAC
CAGCGAGTTGTCGTTGACGTTGCCAAAGTCGTACAGCGGTTTCTTGGAGAGCGAGATCGGGGGTG
GCTTGTCCAAGTCGGTGGTGCTCGACTTGCGTCCGCGGCGGTTGGAGATCATCTCGGGCGGCGTG
TAATCCGTCGGGGTAGGCGGAGGCTTCTCGTCCTTGAAATACCACTTGCCGATCTTCTTGAGGGT
GTTGGCGGCTTTTTCAGCCTTTTCGGACCTCTCGCTCTTTTCCTC
Found at i:70992 original size:35 final size:35
Alignment explanation
Indices: 70907--70992 Score: 111
Period size: 35 Copynumber: 2.5 Consensus size: 35
70897 TTTATACTGT
*
70907 GAGCGAACAGTA-TTGTGTGAGCGAACAATACGGA
1 GAGCGAACAGTACTTGTGAGAGCGAACAATACGGA
* * * **
70941 AAGCGAACACTGCTTGTGAGAGCGAACAATATTGA
1 GAGCGAACAGTACTTGTGAGAGCGAACAATACGGA
70976 GAGCGAACAGTACTTGT
1 GAGCGAACAGTACTTGT
70993 CGATCAAGCC
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
34 9 0.21
35 33 0.79
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (35 bp):
GAGCGAACAGTACTTGTGAGAGCGAACAATACGGA
Left flanking sequence: Indices 70407 -- 70906
GTGGTGTTGACGGGGAACAGGTAGTACTGGGTCTCCAGCTGGGAGATCGAGGCGCGGATCGGGGT
GAATTCCTGGAACTCCTGGGGGTTGTTGCCCCCGTTGCCCTTGAGATCGTCGAGAAGCGACCCGC
TGCCCGGTGGAGGTGCCGTGGACACCAGGCTGATCGACGCCAGCGCGACCAGCGACACCAGCACC
AGCGACGAGTCCAGGGGGCGGTCGCGCGGGTACACGCCGAAGTCGTCGAAGAACACGTCCTCGAG
CCCGGCCGCCACGAGGGTCGCGAGCCAGAGCACTGGTAGGAGGAGCATCCCGTGAGTGGTGAGGC
TGGTGGTGGCCGAAAAAGTGCGGATGGGTGGGCTTAGGTGTGGGAGAGAGAAAAGGGGGTGGAAG
GGACTAGCGGTGGGACTAGCGTAGTGATAGGAGGTAGCTTTATGTGGTGGGGTGACGAGTGAGGC
GAGAGACTAGGCAAAAACTACGAGATCAAAGAAGGTTTATACTGT
Right flanking sequence: Indices 70993 -- 71492
CGATCAAGCCTACTGCGCCAGCAACGCTGGGGTGTATCTTCGCATTGAAGCTTGGTTCATTTAAG
ATATATAATAGTTATCAGATGTCTGAAAAAGTATATAGTACTGAAATATGACACTGGAACAGATC
AGTTGTGACTTTCCAAAGCGACACATCAGGTGATCAACTGAAACTCGCTAAGATAACCTCACATG
TCCTTTGGAGTCCGACGCTCTTTCATCCTATCAAACCAACTCAGCTCAAGAGTATTCCTAAAAAT
TTGCCTCAAGAGTGTTCCAGATTCCGCAACATGGGTATAGGAGAACAACGGGGTAAATGCCATGA
GAGTTTACCGTCTTCTGCACGTCTGGCATCATGTCAAGGTATGCAAGAGGGTCACAGAGACCCAC
GTAAAAATCATAACGAAGGGGGTTTTCTCAGTATTCTAACAGTTTTAACATATTCCTAAGTACCC
CTATATTCTTCTACAATATTCCAAACAGTCTCCTTAACAAATGCC
Found at i:74150 original size:12 final size:12
Alignment explanation
Indices: 74135--74176 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
74125 CGCGGCTGCG
74135 CTGGCGG-CCACA
1 CTGGCGGCCCA-A
74147 CTGGCGGCCCAA
1 CTGGCGGCCCAA
74159 CTGGCGGCCCAA
1 CTGGCGGCCCAA
*
74171 CGGGCG
1 CTGGCG
74177 ACTACGCGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
12 25 0.89
13 3 0.11
ACGTcount: A:0.14, C:0.40, G:0.38, T:0.07
Consensus pattern (12 bp):
CTGGCGGCCCAA
Left flanking sequence: Indices 73635 -- 74134
GGGTGTGTTGGCCGTGTTGGCCTTGGTGCGGTTGTGTTGTTGCGGTGGTGTCACTGTGTTCGTCG
CTGTGTTGGCGGGCTCGGCAACTGCGGTAATCCTGGCTACAGGCGGTGAAAAGTAATTTTAGAAA
ACGCTACACCAGGCGAGCGGTTGCGGGGGGTTCCGTGTCTTGGCACCGGTATCCCCGCCACAAGA
CCACGTAGCGGTGTCGCCCGGGTGGCGCGGCACCTGTCACCTGGTGGCTCTGGCATCACCTGATC
CAGGGGGTGTGCCAATGGCGCCCCTGTAGACCCCTGTCGACATCAGGTGAGGCACGCGACCGCTC
GCCTGATGTGGCTTCGGGTGCAGCGTTCTAGCCCGGTGGGGTGACACCCGTAGAATCTTGGTGTC
ACCGCTGGATCTGCCTCGATGCCTGCTGGCGGACACCGCCCTACAGCCATAAGTAGCCACAAAAC
CGCCGATGGGCGATCTGATGGGCTGCTCCCGACACCGCGGCTGCG
Right flanking sequence: Indices 74177 -- 74676
ACTACGCGGGCTTCCCCACCACTGGCCTCCTCGTCCGCTCCATAGTGCCTAAACAATGGGCGCGC
GCACGCCATAACAAACAGGATGCTACGAGGACGGACCCCTGCCGGTGCGAGCTGGCACTGGGACG
ACGGCTGCACGGGTGATCGTGTCGGCAGCGGCGTGGATCGCCCGGTGGTCCGCCCGTTTCTCTAC
GTGGCGCTACCAGTGCTGCTGCCCACGGTGCACCGCGAGGTGTGCGAGCACTTGGCGGAGATCCA
CGGCGACGACCGCGCGCGGTGCTGCGAGCGGGTGGCGGCGCTCGTGGGGCTTCTGCCGGCGGAAA
TGGCGGCGGAGCTCGAGCAATTGTCGCCGGTGGCGGCGGTGCTCCGGGTGTTGCTGAGCCCCGCG
CGGGGGCTGCGGCAGCTGGTGCCGCTGGCGGCGCTGGCGGCACGGAAACAGGCGTTTCTCGAGCG
GTTCCCCGGGGTGCCGGTGCCCGAGGTGGCGCTGGCGTTGTACGA
Found at i:74858 original size:18 final size:18
Alignment explanation
Indices: 74837--74891 Score: 101
Period size: 18 Copynumber: 3.1 Consensus size: 18
74827 GCCACGGAGC
74837 GAGGACACGTCGAAGAGT
1 GAGGACACGTCGAAGAGT
74855 GAGGACACGTCGAAGAGT
1 GAGGACACGTCGAAGAGT
*
74873 GAGGACACGCCGAAGAGT
1 GAGGACACGTCGAAGAGT
74891 G
1 G
74892 TGGAGAAGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.33, C:0.18, G:0.40, T:0.09
Consensus pattern (18 bp):
GAGGACACGTCGAAGAGT
Left flanking sequence: Indices 74337 -- 74836
GCGTGGATCGCCCGGTGGTCCGCCCGTTTCTCTACGTGGCGCTACCAGTGCTGCTGCCCACGGTG
CACCGCGAGGTGTGCGAGCACTTGGCGGAGATCCACGGCGACGACCGCGCGCGGTGCTGCGAGCG
GGTGGCGGCGCTCGTGGGGCTTCTGCCGGCGGAAATGGCGGCGGAGCTCGAGCAATTGTCGCCGG
TGGCGGCGGTGCTCCGGGTGTTGCTGAGCCCCGCGCGGGGGCTGCGGCAGCTGGTGCCGCTGGCG
GCGCTGGCGGCACGGAAACAGGCGTTTCTCGAGCGGTTCCCCGGGGTGCCGGTGCCCGAGGTGGC
GCTGGCGTTGTACGACGTGGTGGCGGGCGACGAGCGGCGGTTTCTCACCGGGATGGCGATGGTGT
TGAACGAGCGGATGCGGGCGCCGGCGGTAGAGGACGAGCCGTCGCGGTACTCGGAGGTGATGGCC
AACCTCCAGCGGGACATCAAGTCGATTGAGGACACGCCACGGAGC
Right flanking sequence: Indices 74892 -- 75391
TGGAGAAGGTGGAAAGCGAGCCGGTCGCGAAGGCGAAGAAGAAGAAGCCGTCGAAGGCGGCGCAG
AAGCGGCAGGCGAAGAAGCAGGCGAGGCGGGAGGCCAAAGTGGGGGAAAGGGAGGCGGAAACGGG
GATGGAGAGGGAGCTGACAACGGAGCCGGAGACGGGACCGTCGGATATGGAGCCGTCCAGCTCTG
AAGCCTCCTCCAAGACCACCACCTCCACCACCAACTCCGCGGCTGAATCTTCCACCGCTGACTCA
ACCACCGACAATTCAACCAACACCACGGCTGAATTCGCCACCACCACTGCTAACTCCACCACTGC
CCCCACCACTACCGACTCCGACCCCGACTTCGACGCCGTGTGCGACCTGTTGGCGGACCTCTTCC
CCCACGTCGCCCGCTCCGAGCTCGCGCTCTTGATCCAGACGTCCACCAACATGGAGGAGCTCGTG
GAGTACCTCTGCGTGGACCAGGAGACCCACGACCTCGCGATGGCG
Found at i:74858 original size:36 final size:36
Alignment explanation
Indices: 74818--74891 Score: 96
Period size: 36 Copynumber: 2.1 Consensus size: 36
74808 TCAAGTCGAT
* *
74818 TGAGGACACG-CCACGGAGCGAGGACACGTCGAAGAG
1 TGAGGACACGTCCA-AGAGCGAGGACACGCCGAAGAG
* *
74854 TGAGGACACGTCGAAGAGTGAGGACACGCCGAAGAG
1 TGAGGACACGTCCAAGAGCGAGGACACGCCGAAGAG
74890 TG
1 TG
74892 TGGAGAAGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 31 0.94
37 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.39, T:0.08
Consensus pattern (36 bp):
TGAGGACACGTCCAAGAGCGAGGACACGCCGAAGAG
Left flanking sequence: Indices 74318 -- 74817
GGTGATCGTGTCGGCAGCGGCGTGGATCGCCCGGTGGTCCGCCCGTTTCTCTACGTGGCGCTACC
AGTGCTGCTGCCCACGGTGCACCGCGAGGTGTGCGAGCACTTGGCGGAGATCCACGGCGACGACC
GCGCGCGGTGCTGCGAGCGGGTGGCGGCGCTCGTGGGGCTTCTGCCGGCGGAAATGGCGGCGGAG
CTCGAGCAATTGTCGCCGGTGGCGGCGGTGCTCCGGGTGTTGCTGAGCCCCGCGCGGGGGCTGCG
GCAGCTGGTGCCGCTGGCGGCGCTGGCGGCACGGAAACAGGCGTTTCTCGAGCGGTTCCCCGGGG
TGCCGGTGCCCGAGGTGGCGCTGGCGTTGTACGACGTGGTGGCGGGCGACGAGCGGCGGTTTCTC
ACCGGGATGGCGATGGTGTTGAACGAGCGGATGCGGGCGCCGGCGGTAGAGGACGAGCCGTCGCG
GTACTCGGAGGTGATGGCCAACCTCCAGCGGGACATCAAGTCGAT
Right flanking sequence: Indices 74892 -- 75391
TGGAGAAGGTGGAAAGCGAGCCGGTCGCGAAGGCGAAGAAGAAGAAGCCGTCGAAGGCGGCGCAG
AAGCGGCAGGCGAAGAAGCAGGCGAGGCGGGAGGCCAAAGTGGGGGAAAGGGAGGCGGAAACGGG
GATGGAGAGGGAGCTGACAACGGAGCCGGAGACGGGACCGTCGGATATGGAGCCGTCCAGCTCTG
AAGCCTCCTCCAAGACCACCACCTCCACCACCAACTCCGCGGCTGAATCTTCCACCGCTGACTCA
ACCACCGACAATTCAACCAACACCACGGCTGAATTCGCCACCACCACTGCTAACTCCACCACTGC
CCCCACCACTACCGACTCCGACCCCGACTTCGACGCCGTGTGCGACCTGTTGGCGGACCTCTTCC
CCCACGTCGCCCGCTCCGAGCTCGCGCTCTTGATCCAGACGTCCACCAACATGGAGGAGCTCGTG
GAGTACCTCTGCGTGGACCAGGAGACCCACGACCTCGCGATGGCG
Found at i:76587 original size:14 final size:14
Alignment explanation
Indices: 76533--76591 Score: 66
Period size: 14 Copynumber: 4.2 Consensus size: 14
76523 GGGAACCAGG
*
76533 GTGGTG-TGGGGGT
1 GTGGTGATGTGGGT
76546 GGTGGTGATGTGGGT
1 -GTGGTGATGTGGGT
* *
76561 GTGATGGTGTGGGT
1 GTGGTGATGTGGGT
*
76575 GTGGTGATATGGGT
1 GTGGTGATGTGGGT
76589 GTG
1 GTG
76592 TGGGCTGGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 32 0.84
15 6 0.16
ACGTcount: A:0.07, C:0.00, G:0.59, T:0.34
Consensus pattern (14 bp):
GTGGTGATGTGGGT
Left flanking sequence: Indices 76033 -- 76532
GGCAGCCGCGCTCAAGACCCGGGTGCCGCTGCAACCACGGGCGAAGCCCCAGGCCAACACGGTGA
TGGCCCGCCACTACGACAACTACCAGCGCCACCAGACGCTGCGGCTTCCCGCGGACGCGGCCGCG
GCGCTCGCGCAGTTCCGCCGCGGCGGCACCCTCGACTTGCACGGGTTGCTTCTCCAGCCGGCGAT
GCTGATAGCCCGCACGGCGCTCGCCGAGTGGTGGCTGAGCGAGCTCAAGGCCCGCGAGACCCAGG
GCGAGTTGCACAAGTTTGGTGCGCGGGCGCAGTTTGCCGGGCTGGTGAACATAGTCACCGGCCGC
GGGCTCCACTCGGCGGGCGGGGTGCTGGTGATCCGGCGGGGCATCGCCAACTTGCTCAAGATCGG
GCGGTACACGTACGACGAGGAGGCCGGGTCGTTTGAGGTGACGGGCAAGTTGCGGGGGTGACGAT
AACTACGTATTTATTAGATTATGATTAACGAAAAGGGGAACCAGG
Right flanking sequence: Indices 76592 -- 77091
TGGGCTGGTGTTTTGGTTTGAGTGGTGTGGCATGGTGAGTGGTGGCATGGAGTGGTGGCATGGCT
TTGTGCAGTTGGTGAATGGTGGTGAGTGGCGGCATGACTTTGTGGAATTGGTGAGTGGTGGCTTC
GTGGCCTGGACGACTGCAATTTGTGACTTTTCGTGGACCTACCAGAAACTACCCCATGTTAAGGC
TAGCAACTGAGTGTGCCTCAACCGCTGGAACCGTTGAAACCGTTGAAACCGTTAGACCCATTGCA
ACCGTTGCAACCTTCCAACCCATGACTCCACATTCTGACCGGGTTCCATTGTACCCCACGTTTGG
GCATTCCCCATTGGGAACCTTCCCCAGGTTCACTACCCCAGTCACTCTACCCCAGATGCGCGTAT
TTGGAGTGTACCCCGGGTGCGGTCCACAGGAGACTACAAGAGCCACTGGGCAATATACATCTACC
CGTGCACTCTAGACATACCCATGCCCAAAGGAAGAACCACCCTAT
Found at i:76638 original size:15 final size:14
Alignment explanation
Indices: 76618--76654 Score: 58
Period size: 13 Copynumber: 2.6 Consensus size: 14
76608 TTTGAGTGGT
76618 GTGGCATGGTGAGTG
1 GTGGCATGG-GAGTG
76633 GTGGCAT-GGAGTG
1 GTGGCATGGGAGTG
76646 GTGGCATGG
1 GTGGCATGG
76655 CTTTGTGCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 12 0.57
14 2 0.10
15 7 0.33
ACGTcount: A:0.14, C:0.08, G:0.54, T:0.24
Consensus pattern (14 bp):
GTGGCATGGGAGTG
Left flanking sequence: Indices 76118 -- 76617
TACCAGCGCCACCAGACGCTGCGGCTTCCCGCGGACGCGGCCGCGGCGCTCGCGCAGTTCCGCCG
CGGCGGCACCCTCGACTTGCACGGGTTGCTTCTCCAGCCGGCGATGCTGATAGCCCGCACGGCGC
TCGCCGAGTGGTGGCTGAGCGAGCTCAAGGCCCGCGAGACCCAGGGCGAGTTGCACAAGTTTGGT
GCGCGGGCGCAGTTTGCCGGGCTGGTGAACATAGTCACCGGCCGCGGGCTCCACTCGGCGGGCGG
GGTGCTGGTGATCCGGCGGGGCATCGCCAACTTGCTCAAGATCGGGCGGTACACGTACGACGAGG
AGGCCGGGTCGTTTGAGGTGACGGGCAAGTTGCGGGGGTGACGATAACTACGTATTTATTAGATT
ATGATTAACGAAAAGGGGAACCAGGGTGGTGTGGGGGTGGTGGTGATGTGGGTGTGATGGTGTGG
GTGTGGTGATATGGGTGTGTGGGCTGGTGTTTTGGTTTGAGTGGT
Right flanking sequence: Indices 76655 -- 77154
CTTTGTGCAGTTGGTGAATGGTGGTGAGTGGCGGCATGACTTTGTGGAATTGGTGAGTGGTGGCT
TCGTGGCCTGGACGACTGCAATTTGTGACTTTTCGTGGACCTACCAGAAACTACCCCATGTTAAG
GCTAGCAACTGAGTGTGCCTCAACCGCTGGAACCGTTGAAACCGTTGAAACCGTTAGACCCATTG
CAACCGTTGCAACCTTCCAACCCATGACTCCACATTCTGACCGGGTTCCATTGTACCCCACGTTT
GGGCATTCCCCATTGGGAACCTTCCCCAGGTTCACTACCCCAGTCACTCTACCCCAGATGCGCGT
ATTTGGAGTGTACCCCGGGTGCGGTCCACAGGAGACTACAAGAGCCACTGGGCAATATACATCTA
CCCGTGCACTCTAGACATACCCATGCCCAAAGGAAGAACCACCCTATTGGCCCTCATGCATTGAT
CAACATGTCACCCTTGACCATCCCTACCAATTGCCTACTAGAACC
Found at i:76692 original size:39 final size:39
Alignment explanation
Indices: 76641--76717 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
76631 TGGTGGCATG
* * *
76641 GAGTGGTGGCATGGCTTTGTGCAGTTGGTGAATGGTGGT
1 GAGTGGCGGCATGACTTTGTGCAATTGGTGAATGGTGGT
* *
76680 GAGTGGCGGCATGACTTTGTGGAATTGGTGAGTGGTGG
1 GAGTGGCGGCATGACTTTGTGCAATTGGTGAATGGTGG
76718 CTTCGTGGCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.14, C:0.08, G:0.47, T:0.31
Consensus pattern (39 bp):
GAGTGGCGGCATGACTTTGTGCAATTGGTGAATGGTGGT
Left flanking sequence: Indices 76141 -- 76640
GCTTCCCGCGGACGCGGCCGCGGCGCTCGCGCAGTTCCGCCGCGGCGGCACCCTCGACTTGCACG
GGTTGCTTCTCCAGCCGGCGATGCTGATAGCCCGCACGGCGCTCGCCGAGTGGTGGCTGAGCGAG
CTCAAGGCCCGCGAGACCCAGGGCGAGTTGCACAAGTTTGGTGCGCGGGCGCAGTTTGCCGGGCT
GGTGAACATAGTCACCGGCCGCGGGCTCCACTCGGCGGGCGGGGTGCTGGTGATCCGGCGGGGCA
TCGCCAACTTGCTCAAGATCGGGCGGTACACGTACGACGAGGAGGCCGGGTCGTTTGAGGTGACG
GGCAAGTTGCGGGGGTGACGATAACTACGTATTTATTAGATTATGATTAACGAAAAGGGGAACCA
GGGTGGTGTGGGGGTGGTGGTGATGTGGGTGTGATGGTGTGGGTGTGGTGATATGGGTGTGTGGG
CTGGTGTTTTGGTTTGAGTGGTGTGGCATGGTGAGTGGTGGCATG
Right flanking sequence: Indices 76718 -- 77217
CTTCGTGGCCTGGACGACTGCAATTTGTGACTTTTCGTGGACCTACCAGAAACTACCCCATGTTA
AGGCTAGCAACTGAGTGTGCCTCAACCGCTGGAACCGTTGAAACCGTTGAAACCGTTAGACCCAT
TGCAACCGTTGCAACCTTCCAACCCATGACTCCACATTCTGACCGGGTTCCATTGTACCCCACGT
TTGGGCATTCCCCATTGGGAACCTTCCCCAGGTTCACTACCCCAGTCACTCTACCCCAGATGCGC
GTATTTGGAGTGTACCCCGGGTGCGGTCCACAGGAGACTACAAGAGCCACTGGGCAATATACATC
TACCCGTGCACTCTAGACATACCCATGCCCAAAGGAAGAACCACCCTATTGGCCCTCATGCATTG
ATCAACATGTCACCCTTGACCATCCCTACCAATTGCCTACTAGAACCCTATCCTAAGAAAGCATT
GGCCACAACCACCACTCCCACACAACTATCACTTCCAACCACCAC
Found at i:76827 original size:9 final size:9
Alignment explanation
Indices: 76815--76839 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
76805 CAACCGCTGG
76815 AACCGTTGA
1 AACCGTTGA
76824 AACCGTTGA
1 AACCGTTGA
76833 AACCGTT
1 AACCGTT
76840 AGACCCATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (9 bp):
AACCGTTGA
Left flanking sequence: Indices 76315 -- 76814
GCGGGCGCAGTTTGCCGGGCTGGTGAACATAGTCACCGGCCGCGGGCTCCACTCGGCGGGCGGGG
TGCTGGTGATCCGGCGGGGCATCGCCAACTTGCTCAAGATCGGGCGGTACACGTACGACGAGGAG
GCCGGGTCGTTTGAGGTGACGGGCAAGTTGCGGGGGTGACGATAACTACGTATTTATTAGATTAT
GATTAACGAAAAGGGGAACCAGGGTGGTGTGGGGGTGGTGGTGATGTGGGTGTGATGGTGTGGGT
GTGGTGATATGGGTGTGTGGGCTGGTGTTTTGGTTTGAGTGGTGTGGCATGGTGAGTGGTGGCAT
GGAGTGGTGGCATGGCTTTGTGCAGTTGGTGAATGGTGGTGAGTGGCGGCATGACTTTGTGGAAT
TGGTGAGTGGTGGCTTCGTGGCCTGGACGACTGCAATTTGTGACTTTTCGTGGACCTACCAGAAA
CTACCCCATGTTAAGGCTAGCAACTGAGTGTGCCTCAACCGCTGG
Right flanking sequence: Indices 76840 -- 77339
AGACCCATTGCAACCGTTGCAACCTTCCAACCCATGACTCCACATTCTGACCGGGTTCCATTGTA
CCCCACGTTTGGGCATTCCCCATTGGGAACCTTCCCCAGGTTCACTACCCCAGTCACTCTACCCC
AGATGCGCGTATTTGGAGTGTACCCCGGGTGCGGTCCACAGGAGACTACAAGAGCCACTGGGCAA
TATACATCTACCCGTGCACTCTAGACATACCCATGCCCAAAGGAAGAACCACCCTATTGGCCCTC
ATGCATTGATCAACATGTCACCCTTGACCATCCCTACCAATTGCCTACTAGAACCCTATCCTAAG
AAAGCATTGGCCACAACCACCACTCCCACACAACTATCACTTCCAACCACCACTTCCGCACACCA
CCTTCACGCACCATTTTCACCCCCTACTTCACCCCTACTTCACCCCACCACTCCCACACTCCCAC
TTCTACACTCACCGCTCCCGCGTTCACCGCTCCCGCGTTCACTCT
Found at i:77262 original size:12 final size:12
Alignment explanation
Indices: 77245--77275 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
77235 ACGCACCATT
77245 TTCACCCCCTAC
1 TTCACCCCCTAC
77257 TTCA-CCCCTAC
1 TTCACCCCCTAC
77268 TTCACCCC
1 TTCACCCC
77276 ACCACTCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.16, C:0.58, G:0.00, T:0.26
Consensus pattern (12 bp):
TTCACCCCCTAC
Left flanking sequence: Indices 76745 -- 77244
TGACTTTTCGTGGACCTACCAGAAACTACCCCATGTTAAGGCTAGCAACTGAGTGTGCCTCAACC
GCTGGAACCGTTGAAACCGTTGAAACCGTTAGACCCATTGCAACCGTTGCAACCTTCCAACCCAT
GACTCCACATTCTGACCGGGTTCCATTGTACCCCACGTTTGGGCATTCCCCATTGGGAACCTTCC
CCAGGTTCACTACCCCAGTCACTCTACCCCAGATGCGCGTATTTGGAGTGTACCCCGGGTGCGGT
CCACAGGAGACTACAAGAGCCACTGGGCAATATACATCTACCCGTGCACTCTAGACATACCCATG
CCCAAAGGAAGAACCACCCTATTGGCCCTCATGCATTGATCAACATGTCACCCTTGACCATCCCT
ACCAATTGCCTACTAGAACCCTATCCTAAGAAAGCATTGGCCACAACCACCACTCCCACACAACT
ATCACTTCCAACCACCACTTCCGCACACCACCTTCACGCACCATT
Right flanking sequence: Indices 77276 -- 77775
ACCACTCCCACACTCCCACTTCTACACTCACCGCTCCCGCGTTCACCGCTCCCGCGTTCACTCTT
TGTCTCGTTTCATCGATGACGCTCCAGCCCGCTGCTCCTTTCGCTTAGCGCTAAGCCTACTCCAC
CACTCCACCACCAATTACACACCCACTGTCCACCACCAACCCACACACCAACTGCCCAGCCACCG
CCACCATCCCCACCGTGCCCCCATCCACCCCACCACACCACCACCGCACCATCCACCCACACCGC
ACCGCCTGGTTCCCCCACTACCCGCCCAGCGATGGCAGATCTGCTGCTTTCACGCGTGCTGCGCG
GTTACATAAGCAAGAATGCCTGTATATACGCCGTTTCTGTTGGTCGTTTTTCACCAGAAAAAGAG
ACCGTGAAAGGGATAAACACACCTCTACGAACAAACATGGACGGCGCCGCAGCCACTGCACTGCC
GACCCTACCCCCGCCGGGGCACACCCCGCCACACCCCACCAGCCC
Found at i:77323 original size:15 final size:15
Alignment explanation
Indices: 77303--77336 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
77293 ACTTCTACAC
77303 TCACCGCTCCCGCGT
1 TCACCGCTCCCGCGT
77318 TCACCGCTCCCGCGT
1 TCACCGCTCCCGCGT
77333 TCAC
1 TCAC
77337 TCTTTGTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.09, C:0.53, G:0.18, T:0.21
Consensus pattern (15 bp):
TCACCGCTCCCGCGT
Left flanking sequence: Indices 76803 -- 77302
CTCAACCGCTGGAACCGTTGAAACCGTTGAAACCGTTAGACCCATTGCAACCGTTGCAACCTTCC
AACCCATGACTCCACATTCTGACCGGGTTCCATTGTACCCCACGTTTGGGCATTCCCCATTGGGA
ACCTTCCCCAGGTTCACTACCCCAGTCACTCTACCCCAGATGCGCGTATTTGGAGTGTACCCCGG
GTGCGGTCCACAGGAGACTACAAGAGCCACTGGGCAATATACATCTACCCGTGCACTCTAGACAT
ACCCATGCCCAAAGGAAGAACCACCCTATTGGCCCTCATGCATTGATCAACATGTCACCCTTGAC
CATCCCTACCAATTGCCTACTAGAACCCTATCCTAAGAAAGCATTGGCCACAACCACCACTCCCA
CACAACTATCACTTCCAACCACCACTTCCGCACACCACCTTCACGCACCATTTTCACCCCCTACT
TCACCCCTACTTCACCCCACCACTCCCACACTCCCACTTCTACAC
Right flanking sequence: Indices 77337 -- 77836
TCTTTGTCTCGTTTCATCGATGACGCTCCAGCCCGCTGCTCCTTTCGCTTAGCGCTAAGCCTACT
CCACCACTCCACCACCAATTACACACCCACTGTCCACCACCAACCCACACACCAACTGCCCAGCC
ACCGCCACCATCCCCACCGTGCCCCCATCCACCCCACCACACCACCACCGCACCATCCACCCACA
CCGCACCGCCTGGTTCCCCCACTACCCGCCCAGCGATGGCAGATCTGCTGCTTTCACGCGTGCTG
CGCGGTTACATAAGCAAGAATGCCTGTATATACGCCGTTTCTGTTGGTCGTTTTTCACCAGAAAA
AGAGACCGTGAAAGGGATAAACACACCTCTACGAACAAACATGGACGGCGCCGCAGCCACTGCAC
TGCCGACCCTACCCCCGCCGGGGCACACCCCGCCACACCCCACCAGCCCCCTCCCCCGCCGCGAA
TTGGACGCGCCCGCGGGCAACGTGGTCACCACCACCGTCGCGGCG
Found at i:89571 original size:14 final size:15
Alignment explanation
Indices: 89536--89574 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
89526 CGTATACACT
89536 CACCA-CCGATCCACA
1 CACCACCCG-TCCACA
89551 CACCACCCGTCCACA
1 CACCACCCGTCCACA
89566 -ACCACCCGT
1 CACCACCCGT
89575 TTACTAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.39
15 11 0.48
16 3 0.13
ACGTcount: A:0.28, C:0.56, G:0.08, T:0.08
Consensus pattern (15 bp):
CACCACCCGTCCACA
Left flanking sequence: Indices 89036 -- 89535
TTGCCCAAGTTGCCGTAGATGTTCGTCGAGTCCTCGTCTGCCTTGAAGGTGGCCAGCAGCTTGCG
GGACGACGACCCGGTCAACAGCAAGTTTTTGAGGAACGAGCTGAGGTTTTTCCCCTTGCCCCCGT
GCTCACCGAAGATGAACTCGTTGTTGCTCCCGTTGTACACTTGGGACATCTCTTGTTTCTTGCCC
ATGACAACAACCTTAGCAACGTGGTTTTTCGCACGCGGCGAAACGAGTAGGTTGGTGGTGGTGGG
GGGCGGTAGCGCAAGGGGTTCATGCGGGGCCTGGAAGGGGTTGAATGTGGCTGTGTGGCTACGGG
TGGTGTTTACTGGGTGTTTTTGGGCACGGGAGGCCCGAGTCGCGTTGTGGGGCAATGGCTGCAAA
AGATACGAGGAACGAGTGGGTGAAGCACTGATGGTTCAAGAAAGCTGTGGAACATGTGGGCTGGT
GGCATTCCCGATCAGCTTAACACGACTACCGCGATCGTATACACT
Right flanking sequence: Indices 89575 -- 90074
TTACTAATTACTTCCCTTACTCTCCCTCTTCAGCCGCATTAGGCCGAATTTTTCAGATCAGAGAC
CATGCTACTACCGCTACGACCGTTGCTCGGCAGCGCAGCAGCGCCGTGGCGCGTGCCCCGGAGGC
TTCTCCAGGTGCTGGCAGCGCGGTGGGCCGCTGCCAAACAGGTGTTGAGTGTCGAGGAGAAGCGC
CGGCTCCTCAACCAGGAGGCGTACCGCAAGGAGGTCGAGTCCCGCATCGCCAAAATCCCGATTGA
GAACTACCGCAACTTTTCCATCGTGGCCCACGTCGACCACGGCAAACTGACGCTCTCGGACCGGT
TGTTGGAGCTCACGGGAGTGATCCAGCCCGGCGGGAAACAGGTGTTGGACAAGCTCGATGTCGAG
CGCGAGCGGGGGATTACCGTCAAGGCACAGACAGTGTCGATGATCTACAACCACGAGGGCCAGGA
CTATCTCTTGCACTTGGTGGACACCCCCGGGCACGTCGATTTCCG
Found at i:92453 original size:12 final size:12
Alignment explanation
Indices: 92438--92467 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
92428 TGGACTCCTC
92438 CTTGGGAGCAGA
1 CTTGGGAGCAGA
92450 CTTGGGAGCAGA
1 CTTGGGAGCAGA
92462 CTTGGG
1 CTTGGG
92468 GGCGGGGGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.43, T:0.20
Consensus pattern (12 bp):
CTTGGGAGCAGA
Left flanking sequence: Indices 91938 -- 92437
ACACCACCGTTGGAGATGGTGAAGGTGCCACCAGCCATGTCCTCAAGGGCCAACTTGCCGTCTCT
GGCCTTCTTACCGAGAGCAGCGATCTCGGCCTCAATCCCGAGGATCGAGCGAGACTCGGCGTTGC
GGATAACGGGGGTCACCAAACCCTTGGGGGTGGCCACGGCAACCGAGATGTCGACGTAGTCTCTG
AACACCAAGGTGTCGTCGTTCTCGATGGCAGCGTTGATGGCGGGGTTCTCCTTGGCGGCAAGACA
CACCGCCTTGGCGAAGGGACCCATGAAACCAAGCTTGATGCCGGTCTTGTCGAGGAACTCGTCCT
TGTACTTCTTTCTGAACGCCATGATCTTGGACATGTCGATCTCGTTGAAGGTGGTCAACGACGCG
TGGGTGTTCTGCGACTCCTTAAGTCTCTCGGCGATTCTCAATCTCATGCGGTTCATCTTGACACG
CTCCTCACCACGCGAGAACGAGGCGGCGGGGGCCTTGGACTCCTC
Right flanking sequence: Indices 92468 -- 92967
GGCGGGGGCAGCAGCCTTGGGCTCCTCCTTGGCGGGAGCGGACTCCTGCTTGGGGGCCTCCTTGG
CGGGAGCCTCGTCCTTGGGCGCCTCCTCCTTGGGGGTCTCCTTGGGAGCAGCACCGCCCTCAGGG
GCGTCACCCTCCTCGATCTTGGCGATCTCCTGGCCCACCTCGACGGTGTCCTCAGCCGAAACCAA
GAGCTCAGTCACGGTACCACCAACGGGGGCGTTCACCTCGACATCGATCTTGTCGGTCTCAATGG
TGGCCAACAACTCGTCACGAGCCACGTACTCACCCACCTCCTTGTTCCAGGCGGACAAGGTACCC
TCGGTGATGGACTCGGCCATCTCGGGCACCTTGACGGTCTGGGAGGCAAAACGTCTGGGGACAAC
CATCGACGACCACACCGAAGGAGCAGCAGCGGTGGTTCTGGGGGCATTGGCCACCATCAGAACGG
TTCTGGCAGAAACATTGGCATGCTTAACCGTGGTCGCAGCCCGCA
Found at i:92557 original size:30 final size:31
Alignment explanation
Indices: 92482--92559 Score: 95
Period size: 33 Copynumber: 2.5 Consensus size: 31
92472 GGGGCAGCAG
*
92482 CCTTGGGCTCCTCCTTGGCGGGAGCGGACTCCT
1 CCTTGGGCGCCTCCTTGGCGGGAGC-G-CTCCT
* * *
92515 GCTTGGGGGCCTCCTTGGCGGGAGC-CTCGT
1 CCTTGGGCGCCTCCTTGGCGGGAGCGCTCCT
92545 CCTTGGGCGCCTCCT
1 CCTTGGGCGCCTCCT
92560 CCTTGGGGGT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
30 17 0.44
33 22 0.56
ACGTcount: A:0.04, C:0.36, G:0.36, T:0.24
Consensus pattern (31 bp):
CCTTGGGCGCCTCCTTGGCGGGAGCGCTCCT
Left flanking sequence: Indices 91982 -- 92481
AAGGGCCAACTTGCCGTCTCTGGCCTTCTTACCGAGAGCAGCGATCTCGGCCTCAATCCCGAGGA
TCGAGCGAGACTCGGCGTTGCGGATAACGGGGGTCACCAAACCCTTGGGGGTGGCCACGGCAACC
GAGATGTCGACGTAGTCTCTGAACACCAAGGTGTCGTCGTTCTCGATGGCAGCGTTGATGGCGGG
GTTCTCCTTGGCGGCAAGACACACCGCCTTGGCGAAGGGACCCATGAAACCAAGCTTGATGCCGG
TCTTGTCGAGGAACTCGTCCTTGTACTTCTTTCTGAACGCCATGATCTTGGACATGTCGATCTCG
TTGAAGGTGGTCAACGACGCGTGGGTGTTCTGCGACTCCTTAAGTCTCTCGGCGATTCTCAATCT
CATGCGGTTCATCTTGACACGCTCCTCACCACGCGAGAACGAGGCGGCGGGGGCCTTGGACTCCT
CCTTGGGAGCAGACTTGGGAGCAGACTTGGGGGCGGGGGCAGCAG
Right flanking sequence: Indices 92560 -- 93059
CCTTGGGGGTCTCCTTGGGAGCAGCACCGCCCTCAGGGGCGTCACCCTCCTCGATCTTGGCGATC
TCCTGGCCCACCTCGACGGTGTCCTCAGCCGAAACCAAGAGCTCAGTCACGGTACCACCAACGGG
GGCGTTCACCTCGACATCGATCTTGTCGGTCTCAATGGTGGCCAACAACTCGTCACGAGCCACGT
ACTCACCCACCTCCTTGTTCCAGGCGGACAAGGTACCCTCGGTGATGGACTCGGCCATCTCGGGC
ACCTTGACGGTCTGGGAGGCAAAACGTCTGGGGACAACCATCGACGACCACACCGAAGGAGCAGC
AGCGGTGGTTCTGGGGGCATTGGCCACCATCAGAACGGTTCTGGCAGAAACATTGGCATGCTTAA
CCGTGGTCGCAGCCCGCAAGCACGATCTTCTCAAGGTTCTAGACAACATAATTAATTGAATCTAG
CGGAGGATTGGCGTCTAATGAGAGATTTTCAATTTTTGGCTCGCC
Found at i:122531 original size:12 final size:12
Alignment explanation
Indices: 122507--122569 Score: 99
Period size: 12 Copynumber: 5.2 Consensus size: 12
122497 GATATCCTTG
*
122507 GTGACATCATCA
1 GTGACATCCTCA
*
122519 GTGCCATCCTCA
1 GTGACATCCTCA
*
122531 GTAACATCCTCA
1 GTGACATCCTCA
122543 GTGACATCCTCA
1 GTGACATCCTCA
122555 GTGACATCCTCA
1 GTGACATCCTCA
122567 GTG
1 GTG
122570 GGCTCCGTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 46 1.00
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.25
Consensus pattern (12 bp):
GTGACATCCTCA
Left flanking sequence: Indices 122007 -- 122506
CACCCCAAAGCGAGCCAAGGGCTCCGCCTACCGCACCGAGAGCGGCACCAGCGAGCGACGACGAC
GCAGCCTTGGGCTCGTCACCGCTGACCGCCTCCTTGACTACAGGCTCAGGCACCTCTTCCTCGGG
CTGTTTGGCCGCTTGTGCCAGCGGCTCGTTGAGTTCGGCGAGAAGCTCGTTCACCTCGTCGCCTT
GGAGCTGGTTGATAAGGTCGTCGATGTCGACAGACTCGTCTGCCGCCTTGGCCGACGTGTCAGCC
TTGCTGACCGCGTCGTCGGAGTCGCCAGTGGCTGCCTTCTTCGAAAGCGACAACCCTTGGATCTC
TTCGTCTTGGGCGTCAACCTCGGCATCGGTGGGTTCAGGGGCATCGTCCAGGTCCTTTTCGGGCT
CATCCTCCTTGTCAGCCTCCTCATCCCTCTCACCAGTGACGGAGGTGTCTGCCGCCTCGGATTCG
CCGGCTTTAGCTTCAGCAGCCTCCAACGGGGCCTCGATATCCTTG
Right flanking sequence: Indices 122570 -- 123069
GGCTCCGTCTTGGCTTCCTCGGTGTCAGCAGTGTCTACCTCGTCTTCGGCCTTGGTTTCTCCCTC
CTCCTCTGCCTCTTTAGTAGCATCAGCCTCCTCAGTGGCGTGTTCAGGCTTGACATCGGTGGAAT
CGTCAACGAGACTCTTGTCCGCCTCGGTAGCTACTTCCTCGTCCACCTTGGCATCGGCCTCCTCG
GTTTGAGTGGTGGCTTCTTCGTCCTCGTCCTCCTCCTTAGGTTTCTCAACTTCGTCAGAAATCTC
CTCCGCAGCCAGCTTGGCCTCGGCGTCTCCGTCACCTTCAACGTCGTCAAGAACCTTAGATGTCT
CCCCCTCAACCTCAGCAGCCTCGGCTTCAGTTTCATCCTCGTCGGCAACGGATTTTTCCGCTTCC
TCCTCCTTGTCGTCGGGCTTGTGGCCAGTGATGGCTTCGATGACGGCGGCACCAGCAGCTGCACC
AGCAGAAACACCAGCAACAGCACCAGCGGCTGCAGCTTCGGCAAC
Found at i:123025 original size:12 final size:12
Alignment explanation
Indices: 123008--123051 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
122998 GATGACGGCG
*
123008 GCACCAGCAGCT
1 GCACCAGCAGCA
*
123020 GCACCAGCAGAA
1 GCACCAGCAGCA
* *
123032 ACACCAGCAACA
1 GCACCAGCAGCA
123044 GCACCAGC
1 GCACCAGC
123052 GGCTGCAGCT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.36, C:0.41, G:0.20, T:0.02
Consensus pattern (12 bp):
GCACCAGCAGCA
Left flanking sequence: Indices 122508 -- 123007
TGACATCATCAGTGCCATCCTCAGTAACATCCTCAGTGACATCCTCAGTGACATCCTCAGTGGGC
TCCGTCTTGGCTTCCTCGGTGTCAGCAGTGTCTACCTCGTCTTCGGCCTTGGTTTCTCCCTCCTC
CTCTGCCTCTTTAGTAGCATCAGCCTCCTCAGTGGCGTGTTCAGGCTTGACATCGGTGGAATCGT
CAACGAGACTCTTGTCCGCCTCGGTAGCTACTTCCTCGTCCACCTTGGCATCGGCCTCCTCGGTT
TGAGTGGTGGCTTCTTCGTCCTCGTCCTCCTCCTTAGGTTTCTCAACTTCGTCAGAAATCTCCTC
CGCAGCCAGCTTGGCCTCGGCGTCTCCGTCACCTTCAACGTCGTCAAGAACCTTAGATGTCTCCC
CCTCAACCTCAGCAGCCTCGGCTTCAGTTTCATCCTCGTCGGCAACGGATTTTTCCGCTTCCTCC
TCCTTGTCGTCGGGCTTGTGGCCAGTGATGGCTTCGATGACGGCG
Right flanking sequence: Indices 123052 -- 123551
GGCTGCAGCTTCGGCAACCTTGGGGTCGTCCAGCTCGTCGTCTGCCTTCTCAGTCTCAGCAGAGT
CCTTGTCCTCCACCTTCGCCAGGTCAACCTCCTCGTCGTCCAAGGCCTTTGAAACGTCGGCTTCG
GCTTCGTCATCAACAATGCTCTTATCGCCCTCAGACTCCTTCGTCTCGGGGGACTCGGTCTTTGG
TTCGTCCTCAGCCACCTTTTCGGAGTCTTCCACCGCTTCGGAACCTTCATCATCCTTAGCCACGT
TCTTTTCATCACCTTCCTCCGTGCTGGTAACGGGTTTCTTCACAGGCGAAGCCAACGGCGAGGTA
AGGGATGCTTTGCTGTGCGAACGAGACTTAAGCAGCTTCGGAGAGGAGTGTTCAGACTTGGTCTC
CAGGGCAAAGAAGCCGTACTCAGCGGCAACCTCGTTAGATGCAAGAGCGCCTGATGCTACGGATG
TGTTCGCGTCGTCTTCGTCGTCTTCGTCGCCGCCAGTGGCAAGCA
Found at i:124386 original size:15 final size:14
Alignment explanation
Indices: 124349--124401 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 14
124339 TTCCTTAAGC
124349 GGCTCAACCTCCTT
1 GGCTCAACCTCCTT
*
124363 GG-TC-TCCTCCTCT
1 GGCTCAACCTCCT-T
124376 GGCTCAACCTCCTT
1 GGCTCAACCTCCTT
*
124390 CGC-C-ACCTCCTT
1 GGCTCAACCTCCTT
124402 AGCCTCGACT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
12 14 0.42
13 6 0.18
14 7 0.21
15 6 0.18
ACGTcount: A:0.09, C:0.47, G:0.13, T:0.30
Consensus pattern (14 bp):
GGCTCAACCTCCTT
Left flanking sequence: Indices 123849 -- 124348
CTTCCTTGACCTCATCCTCGTCAATGAGTTCGTCCTTTGACGCGTTCTCTTCGGGCTCACCCTTG
GCAATTTCTTCCTTAGTCTCCGACTCAGGCTTGATCTCTTCACTCGCAAGAATGTCCTTCGTAAC
GGGGGACTCTTCCTGCTTATTCACAGAGTGCACACTGGAATGGGGCTCGTCGTCGTCGTCAAACA
AGTCGTTGTTGAACATGTTAACCACCGAGGTGTTCGCGCTGGACGGCGCTGACTCCTTCTTAGGC
TCTGCGGGCAACTTATGCGCGATGGGGCGCCCGCGAACCTGGGTCATCACAACCTGCTCCACGGG
CGGGTTTGTAGTATCGGCTTCCACGGTGGTGTTTGCACTCTCAGCCTCATTGGTCTCCTTCTTGT
GCTCAGCTCTCTTGGTCTCCCCCTTAAGCTGAGCCTCTGTGGTTTCCTCATGTTGAGGCTCAACT
TCCGTGGTCTCCTTTTCAGGCTCAGCCTTCGTGGATTCCTTAAGC
Right flanking sequence: Indices 124402 -- 124901
AGCCTCGACTTCCTTCTCAGCCTCCTCATTGACCTCGTTTTCCTTGGGCTCCTCCTCCTTGACCT
CCAACTCCTTGGTATCGTCAGCCTCATCCGCAAGAACCTGGTCAAGAGCATGGACACGAGGCTCC
AGCCGGGTCAACCCACCCGAAGTGTTCGCGGGCTGGTTCTCCTCATCGTCGCTATAGAACGAAGA
GTGCCTCAGAAGAGACGCAGGGCGCTCAGCCACCTCAGTGGGTGCTGGTTGCGAGGGTTCGGGTT
CGTCGTCGCTATACTCCAGGGTAACCTCTTCGGGCTCCTGTTTAGGGGCAAGGGTGGCTTTCTCA
GTCTTGGCAGGCTTCTCGTCACCACCAGTTGCCTTGGAAACAGCCTCGCCGGCCATGCGAGCCTT
TGGCTGCTCCATTCGAGTCGCCAGCGAGCCGGGATCAAGTGCCAGGCGTGACACGTTGTGGGAGG
TGTTGTGGGTCGTATCAGGGGATACGTCAGTGTCGTCGTAAGTGA
Found at i:124398 original size:27 final size:27
Alignment explanation
Indices: 124349--124400 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
124339 TTCCTTAAGC
* * *
124349 GGCTCAACCTCCTTGGTCTCCTCCTCT
1 GGCTCAACCTCCTTCGCCACCTCCTCT
124376 GGCTCAACCTCCTTCGCCACCTCCT
1 GGCTCAACCTCCTTCGCCACCTCCT
124401 TAGCCTCGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.10, C:0.48, G:0.13, T:0.29
Consensus pattern (27 bp):
GGCTCAACCTCCTTCGCCACCTCCTCT
Left flanking sequence: Indices 123849 -- 124348
CTTCCTTGACCTCATCCTCGTCAATGAGTTCGTCCTTTGACGCGTTCTCTTCGGGCTCACCCTTG
GCAATTTCTTCCTTAGTCTCCGACTCAGGCTTGATCTCTTCACTCGCAAGAATGTCCTTCGTAAC
GGGGGACTCTTCCTGCTTATTCACAGAGTGCACACTGGAATGGGGCTCGTCGTCGTCGTCAAACA
AGTCGTTGTTGAACATGTTAACCACCGAGGTGTTCGCGCTGGACGGCGCTGACTCCTTCTTAGGC
TCTGCGGGCAACTTATGCGCGATGGGGCGCCCGCGAACCTGGGTCATCACAACCTGCTCCACGGG
CGGGTTTGTAGTATCGGCTTCCACGGTGGTGTTTGCACTCTCAGCCTCATTGGTCTCCTTCTTGT
GCTCAGCTCTCTTGGTCTCCCCCTTAAGCTGAGCCTCTGTGGTTTCCTCATGTTGAGGCTCAACT
TCCGTGGTCTCCTTTTCAGGCTCAGCCTTCGTGGATTCCTTAAGC
Right flanking sequence: Indices 124401 -- 124900
TAGCCTCGACTTCCTTCTCAGCCTCCTCATTGACCTCGTTTTCCTTGGGCTCCTCCTCCTTGACC
TCCAACTCCTTGGTATCGTCAGCCTCATCCGCAAGAACCTGGTCAAGAGCATGGACACGAGGCTC
CAGCCGGGTCAACCCACCCGAAGTGTTCGCGGGCTGGTTCTCCTCATCGTCGCTATAGAACGAAG
AGTGCCTCAGAAGAGACGCAGGGCGCTCAGCCACCTCAGTGGGTGCTGGTTGCGAGGGTTCGGGT
TCGTCGTCGCTATACTCCAGGGTAACCTCTTCGGGCTCCTGTTTAGGGGCAAGGGTGGCTTTCTC
AGTCTTGGCAGGCTTCTCGTCACCACCAGTTGCCTTGGAAACAGCCTCGCCGGCCATGCGAGCCT
TTGGCTGCTCCATTCGAGTCGCCAGCGAGCCGGGATCAAGTGCCAGGCGTGACACGTTGTGGGAG
GTGTTGTGGGTCGTATCAGGGGATACGTCAGTGTCGTCGTAAGTG
Found at i:128268 original size:31 final size:31
Alignment explanation
Indices: 128225--128348 Score: 114
Period size: 31 Copynumber: 4.1 Consensus size: 31
128215 CCCCTCAGGA
128225 TGGCCGTGGTCAGCCATCCTCTACACCGGGG
1 TGGCCGTGGTCAGCCATCCTCTACACCGGGG
* * * *
128256 TGGCCATCGTCAGCCCA-CC-C--C-TCGGGA
1 TGGCCGTGGTCAG-CCATCCTCTACACCGGGG
* *
128283 TGGCCGTGGTCAGCCATCCCCTACACCAGGG
1 TGGCCGTGGTCAGCCATCCTCTACACCGGGG
* * *
128314 TGGCCGTGGTCAGCCACCCTTCTACCCCGGAG
1 TGGCCGTGGTCAGCCATCC-TCTACACCGGGG
128346 TGG
1 TGG
128349 TCGTCGGCCC
Statistics
Matches: 72, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
26 3 0.04
27 17 0.24
28 2 0.03
30 2 0.03
31 34 0.47
32 14 0.19
ACGTcount: A:0.14, C:0.39, G:0.30, T:0.18
Consensus pattern (31 bp):
TGGCCGTGGTCAGCCATCCTCTACACCGGGG
Left flanking sequence: Indices 127725 -- 128224
TATCTTCAAGGTCTAGTTAGTGGATAGAAATGAAAGAAGGCTACAATTTAGTTCTATAAACAGAA
GGAACCGTTTTTTCAAGGTTAAATAACCGGAATGAGATTTCAAAATCCCCCTAAAAAGTTCACTA
TAACGGCCAGTGGCTTGTGCTCATGCACCTCAAGATCGAAATGGCATATTTTTTAAGCGAAAAAT
TAAGCGACTGTTGAAAAAATGGCCGAAAATTCGAATAAACGGACTGACCGTAGGGGGCTCTCCCC
GGTATTCATAAACCACTGTGACCGTAGGGGGTTCTCCCTAGGTCACAAAACGGAGGGGCCGTAGG
GGGCCCGCCCCGTTTCCTACATCGGGGTGACCGTACCGGCCCACCCGCCTACAGAGCGCTGGCCG
TAGCCGCCTCCTACTCCGCGGTGGCCGTGGTCGGCCCACCCGCCTACTCAGGGCCGGCCGTAGCC
ACCCTCCTACACCGGAGGGGCCACCTGTCGGCCCACCCCTCAGGA
Right flanking sequence: Indices 128349 -- 128531
TCGTCGGCCCACCCGGCGGGATGGCCGACAGTGGCCACCCCTCTATATACTCTATATACCCAGCC
AGGCGCCATGGCTGGGGTACCCCGGGTGGCTCAATGCTACCATCACAGTAGCATAGAGGTCCAGT
GACCGGGGTGGGGTGGGGTGGCCCGACGGTGGCCACCCCTCTATATACTCTAT
Found at i:128284 original size:58 final size:58
Alignment explanation
Indices: 128176--128332 Score: 201
Period size: 58 Copynumber: 2.7 Consensus size: 58
128166 GGCCGGCCGT
* * *
128176 AGCCACCCTCCTACACCGGAGG-GGCCACCTGTCGGCCCACCCCTCAGGATGGCCGTGGTC
1 AGCCATCCT-CTACACCGG-GGTGGCCATC-GTCAGCCCACCCCTCAGGATGGCCGTGGTC
*
128236 AGCCATCCTCTACACCGGGGTGGCCATCGTCAGCCCACCCCTCGGGATGGCCGTGGTC
1 AGCCATCCTCTACACCGGGGTGGCCATCGTCAGCCCACCCCTCAGGATGGCCGTGGTC
* * * *
128294 AGCCATCCCCTACACCAGGGTGGCCGTGGTCAG-CCACCC
1 AGCCATCCTCTACACCGGGGTGGCCATCGTCAGCCCACCC
128333 TTCTACCCCG
Statistics
Matches: 88, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
57 6 0.07
58 59 0.67
59 15 0.17
60 8 0.09
ACGTcount: A:0.15, C:0.42, G:0.28, T:0.15
Consensus pattern (58 bp):
AGCCATCCTCTACACCGGGGTGGCCATCGTCAGCCCACCCCTCAGGATGGCCGTGGTC
Left flanking sequence: Indices 127676 -- 128175
ACTACGCCAACAACACCGTCTCCACCTCGGGCATCGATGGCAAGGTTGTTATCTTCAAGGTCTAG
TTAGTGGATAGAAATGAAAGAAGGCTACAATTTAGTTCTATAAACAGAAGGAACCGTTTTTTCAA
GGTTAAATAACCGGAATGAGATTTCAAAATCCCCCTAAAAAGTTCACTATAACGGCCAGTGGCTT
GTGCTCATGCACCTCAAGATCGAAATGGCATATTTTTTAAGCGAAAAATTAAGCGACTGTTGAAA
AAATGGCCGAAAATTCGAATAAACGGACTGACCGTAGGGGGCTCTCCCCGGTATTCATAAACCAC
TGTGACCGTAGGGGGTTCTCCCTAGGTCACAAAACGGAGGGGCCGTAGGGGGCCCGCCCCGTTTC
CTACATCGGGGTGACCGTACCGGCCCACCCGCCTACAGAGCGCTGGCCGTAGCCGCCTCCTACTC
CGCGGTGGCCGTGGTCGGCCCACCCGCCTACTCAGGGCCGGCCGT
Right flanking sequence: Indices 128333 -- 128531
TTCTACCCCGGAGTGGTCGTCGGCCCACCCGGCGGGATGGCCGACAGTGGCCACCCCTCTATATA
CTCTATATACCCAGCCAGGCGCCATGGCTGGGGTACCCCGGGTGGCTCAATGCTACCATCACAGT
AGCATAGAGGTCCAGTGACCGGGGTGGGGTGGGGTGGCCCGACGGTGGCCACCCCTCTATATACT
CTAT
Found at i:128303 original size:27 final size:27
Alignment explanation
Indices: 128215--128304 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
128205 TGTCGGCCCA
*
128215 CCCCTCAGGATGGCCGTGGTCAGCCAT
1 CCCCTCGGGATGGCCGTGGTCAGCCAT
* * * *
128242 CCTCTACACCGGGGTGGCCATCGTCAGCCCA-
1 CC-C--C-TCGGGATGGCCGTGGTCAG-CCAT
128273 CCCCTCGGGATGGCCGTGGTCAGCCAT
1 CCCCTCGGGATGGCCGTGGTCAGCCAT
128300 CCCCT
1 CCCCT
128305 ACACCAGGGT
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
26 3 0.06
27 22 0.46
28 2 0.04
30 2 0.04
31 16 0.33
32 3 0.06
ACGTcount: A:0.13, C:0.41, G:0.28, T:0.18
Consensus pattern (27 bp):
CCCCTCGGGATGGCCGTGGTCAGCCAT
Left flanking sequence: Indices 127715 -- 128214
GCAAGGTTGTTATCTTCAAGGTCTAGTTAGTGGATAGAAATGAAAGAAGGCTACAATTTAGTTCT
ATAAACAGAAGGAACCGTTTTTTCAAGGTTAAATAACCGGAATGAGATTTCAAAATCCCCCTAAA
AAGTTCACTATAACGGCCAGTGGCTTGTGCTCATGCACCTCAAGATCGAAATGGCATATTTTTTA
AGCGAAAAATTAAGCGACTGTTGAAAAAATGGCCGAAAATTCGAATAAACGGACTGACCGTAGGG
GGCTCTCCCCGGTATTCATAAACCACTGTGACCGTAGGGGGTTCTCCCTAGGTCACAAAACGGAG
GGGCCGTAGGGGGCCCGCCCCGTTTCCTACATCGGGGTGACCGTACCGGCCCACCCGCCTACAGA
GCGCTGGCCGTAGCCGCCTCCTACTCCGCGGTGGCCGTGGTCGGCCCACCCGCCTACTCAGGGCC
GGCCGTAGCCACCCTCCTACACCGGAGGGGCCACCTGTCGGCCCA
Right flanking sequence: Indices 128305 -- 128531
ACACCAGGGTGGCCGTGGTCAGCCACCCTTCTACCCCGGAGTGGTCGTCGGCCCACCCGGCGGGA
TGGCCGACAGTGGCCACCCCTCTATATACTCTATATACCCAGCCAGGCGCCATGGCTGGGGTACC
CCGGGTGGCTCAATGCTACCATCACAGTAGCATAGAGGTCCAGTGACCGGGGTGGGGTGGGGTGG
CCCGACGGTGGCCACCCCTCTATATACTCTAT
Done.