Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold102
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 99827
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Found at i:143 original size:25 final size:24
Alignment explanation
Indices: 109--155 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
99 GGGTGGTGGT
*
109 GGGTTGATTGGTGGTGGTGTGTGTG
1 GGGTTAATTGGTGGTGG-GTGTGTG
134 GGGTTAATTGGTGGTGGGTGTG
1 GGGTTAATTGGTGGTGGGTGTG
156 GGGTTGGTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.06, C:0.00, G:0.55, T:0.38
Consensus pattern (24 bp):
GGGTTAATTGGTGGTGGGTGTGTG
Left flanking sequence: Indices 1 -- 108
TGGGGGAGTGGGAGGAGATGAGGGTATGGTGGGTGTAGTGAGGGTGGAGATGGAGGTGTTGGTTG
GTGTGGCGGGGTGTGGTGAGGGTGTGGGGGTGGGGGTGGTGGT
Right flanking sequence: Indices 156 -- 655
GGGTTGGTTGGGTGGTTATTAATATAGGAGGTTAGTTCGGGTGGTGGCTTGGGTGGATCGTAAGA
TCAGTAGTAGTGGAGAGGGAGAGAGAGAGAGAGAGAGTAATGGGTGGAGAGACAGTTGAGCAATG
GTTGGCTACTGGTAATTGACTCGGTAATGGGTCCTCACTGTTCTCATAGCTGCAATTTCTTTGCG
CTTCGCTGCAAATGCTCTACTGCTCATTTGCCCGGGCCCTGGTATCCTAGTGTCAGTGCACATTC
CGTCACGTCCCACCACCCAGTCAAGGCTCCCATCAGTATCACACTACCACCCGTTTGAGCCGCCG
GGATCCCAGTTGTAATTGAGGCAGGTCCCTACAGTAGCTATCACCGAACCGCCAGTCCGAAGCAA
CCCTGGCCCAAAGCGACGCTAACCGCACCTAAATGACACCTAAAACGACACTACACCGACACCAG
ACTCACCCCTACACCTACACTGACACCTACACTAACCCCTACACT
Found at i:166 original size:22 final size:22
Alignment explanation
Indices: 116--171 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
106 GGTGGGTTGA
*
116 TTGG-TGGTGGTGTGTGTGGGG
1 TTGGTTGGTGGTGGGTGTGGGG
**
137 TTAATTGGTGGTGGGTGTGGGG
1 TTGGTTGGTGGTGGGTGTGGGG
159 TTGGTTGGGTGGT
1 TTGGTT-GGTGGT
172 TATTAATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
21 2 0.07
22 20 0.71
23 6 0.21
ACGTcount: A:0.04, C:0.00, G:0.57, T:0.39
Consensus pattern (22 bp):
TTGGTTGGTGGTGGGTGTGGGG
Left flanking sequence: Indices 1 -- 115
TGGGGGAGTGGGAGGAGATGAGGGTATGGTGGGTGTAGTGAGGGTGGAGATGGAGGTGTTGGTTG
GTGTGGCGGGGTGTGGTGAGGGTGTGGGGGTGGGGGTGGTGGTGGGTTGA
Right flanking sequence: Indices 172 -- 671
TATTAATATAGGAGGTTAGTTCGGGTGGTGGCTTGGGTGGATCGTAAGATCAGTAGTAGTGGAGA
GGGAGAGAGAGAGAGAGAGAGTAATGGGTGGAGAGACAGTTGAGCAATGGTTGGCTACTGGTAAT
TGACTCGGTAATGGGTCCTCACTGTTCTCATAGCTGCAATTTCTTTGCGCTTCGCTGCAAATGCT
CTACTGCTCATTTGCCCGGGCCCTGGTATCCTAGTGTCAGTGCACATTCCGTCACGTCCCACCAC
CCAGTCAAGGCTCCCATCAGTATCACACTACCACCCGTTTGAGCCGCCGGGATCCCAGTTGTAAT
TGAGGCAGGTCCCTACAGTAGCTATCACCGAACCGCCAGTCCGAAGCAACCCTGGCCCAAAGCGA
CGCTAACCGCACCTAAATGACACCTAAAACGACACTACACCGACACCAGACTCACCCCTACACCT
ACACTGACACCTACACTAACCCCTACACTGACCCCCCTTCCCCAC
Found at i:635 original size:29 final size:30
Alignment explanation
Indices: 596--654 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
586 TAAAACGACA
* *
596 CTACACCGACACC-AGACTCACCCCTACAC
1 CTACACCGACACCTACACTAACCCCTACAC
*
625 CTACACTGACACCTACACTAACCCCTACAC
1 CTACACCGACACCTACACTAACCCCTACAC
655 TGACCCCCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.49, G:0.05, T:0.14
Consensus pattern (30 bp):
CTACACCGACACCTACACTAACCCCTACAC
Left flanking sequence: Indices 96 -- 595
TGGGGGTGGTGGTGGGTTGATTGGTGGTGGTGTGTGTGGGGTTAATTGGTGGTGGGTGTGGGGTT
GGTTGGGTGGTTATTAATATAGGAGGTTAGTTCGGGTGGTGGCTTGGGTGGATCGTAAGATCAGT
AGTAGTGGAGAGGGAGAGAGAGAGAGAGAGAGTAATGGGTGGAGAGACAGTTGAGCAATGGTTGG
CTACTGGTAATTGACTCGGTAATGGGTCCTCACTGTTCTCATAGCTGCAATTTCTTTGCGCTTCG
CTGCAAATGCTCTACTGCTCATTTGCCCGGGCCCTGGTATCCTAGTGTCAGTGCACATTCCGTCA
CGTCCCACCACCCAGTCAAGGCTCCCATCAGTATCACACTACCACCCGTTTGAGCCGCCGGGATC
CCAGTTGTAATTGAGGCAGGTCCCTACAGTAGCTATCACCGAACCGCCAGTCCGAAGCAACCCTG
GCCCAAAGCGACGCTAACCGCACCTAAATGACACCTAAAACGACA
Right flanking sequence: Indices 655 -- 1154
TGACCCCCCTTCCCCACTGCCATTTCCACTCGTCAATCGCTAGCCGAGCCCAGTTGTGCACGGCC
CCACGCTTCCCCGGGCTTGTGCCCGGTGCCATGTGTGCACCCCATAAAGCGCATTTCTGGCGTGC
AGCCAGAGGGCTGTGCACCCGCTGAGCTCACTGTGCGGTGTGCCACCCGCGCCATGTTAAGAGCG
TTGGCAGCATGCAAAATAGGGGGCCCAAGCACCTCGAGCAACGTTTGCCGGGGTGTCAGTAGGCG
TCTCACTTGGCACGCCACAAAGCCGGCCGTAACCTGGGCCGGCGCGGGACTATTTCGCCTTTGGG
TAGCACACGCCTTTGAAATTGGAGGCACCGCGAAAAGCACCATGACCTCATAGGTGCAACACCCC
CAGTGAGGCTGGGGCAACGATATCGTAAATGCCGGTGACGGTGGGCGGCAGATTTCGTAACCACT
ACTGGATCGGGACGTCTCTCCCGGGACGATAATGGCTCGCGGGCA
Found at i:660 original size:12 final size:12
Alignment explanation
Indices: 624--661 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
614 CACCCCTACA
*
624 CCTACACTGACA
1 CCTACACTGACC
*
636 CCTACACTAACC
1 CCTACACTGACC
648 CCTACACTGACC
1 CCTACACTGACC
660 CC
1 CC
662 CCTTCCCCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.29, C:0.50, G:0.05, T:0.16
Consensus pattern (12 bp):
CCTACACTGACC
Left flanking sequence: Indices 124 -- 623
GGTGTGTGTGGGGTTAATTGGTGGTGGGTGTGGGGTTGGTTGGGTGGTTATTAATATAGGAGGTT
AGTTCGGGTGGTGGCTTGGGTGGATCGTAAGATCAGTAGTAGTGGAGAGGGAGAGAGAGAGAGAG
AGAGTAATGGGTGGAGAGACAGTTGAGCAATGGTTGGCTACTGGTAATTGACTCGGTAATGGGTC
CTCACTGTTCTCATAGCTGCAATTTCTTTGCGCTTCGCTGCAAATGCTCTACTGCTCATTTGCCC
GGGCCCTGGTATCCTAGTGTCAGTGCACATTCCGTCACGTCCCACCACCCAGTCAAGGCTCCCAT
CAGTATCACACTACCACCCGTTTGAGCCGCCGGGATCCCAGTTGTAATTGAGGCAGGTCCCTACA
GTAGCTATCACCGAACCGCCAGTCCGAAGCAACCCTGGCCCAAAGCGACGCTAACCGCACCTAAA
TGACACCTAAAACGACACTACACCGACACCAGACTCACCCCTACA
Right flanking sequence: Indices 662 -- 1161
CCTTCCCCACTGCCATTTCCACTCGTCAATCGCTAGCCGAGCCCAGTTGTGCACGGCCCCACGCT
TCCCCGGGCTTGTGCCCGGTGCCATGTGTGCACCCCATAAAGCGCATTTCTGGCGTGCAGCCAGA
GGGCTGTGCACCCGCTGAGCTCACTGTGCGGTGTGCCACCCGCGCCATGTTAAGAGCGTTGGCAG
CATGCAAAATAGGGGGCCCAAGCACCTCGAGCAACGTTTGCCGGGGTGTCAGTAGGCGTCTCACT
TGGCACGCCACAAAGCCGGCCGTAACCTGGGCCGGCGCGGGACTATTTCGCCTTTGGGTAGCACA
CGCCTTTGAAATTGGAGGCACCGCGAAAAGCACCATGACCTCATAGGTGCAACACCCCCAGTGAG
GCTGGGGCAACGATATCGTAAATGCCGGTGACGGTGGGCGGCAGATTTCGTAACCACTACTGGAT
CGGGACGTCTCTCCCGGGACGATAATGGCTCGCGGGCAAAACAAG
Found at i:1787 original size:15 final size:15
Alignment explanation
Indices: 1767--1807 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
1757 ACACCGCAGG
*
1767 CACACCGCACAGGCA
1 CACACCGCACAGACA
1782 CACACCGCACAGACA
1 CACACCGCACAGACA
1797 CACACCGCACA
1 CACACCGCACA
1808 CACCGCACAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.37, C:0.49, G:0.15, T:0.00
Consensus pattern (15 bp):
CACACCGCACAGACA
Left flanking sequence: Indices 1267 -- 1766
TTAGTACGAAGGATGGCTACGAAGGTGGGTATTGTACTTAGAGTAGTGGTTCGTGTAAGGCTCGG
GTAGTGGGCCGGGTATTGTCGTCGGGGCATTGTGGGTGCTGTTGGCTCAATGTCTTTGTGTAGTG
ATGATAGATCGTGCCTGGGGATTGCGCCAATTGTTTGTACCTGGGTTGTGCCTGGTGGCACGGGC
GATGAAGAGGTATTGTTGGCGATCGGCGACGATCAAGGCTGAAGTGGTGGCTGAACCCGTGGGCG
TCTCTGGTGGTATTGGGTGGTGGTGTCGTGAGCCGCACGGGTGTGGTGTCGCGTTGGTGCGCGCG
CACCGAGCCACGGTAGCACTCGTGGGTAGTGGACAGACCTGCGGAGTCTCCGCTGTTTATTACCG
TTTGGACCCGTGGTTCTTGGCAGTTTGCACGCTTCTGTTGGTTGACTAGGACAAGACTCGCACGA
GGTACCGCACAGGCATATCGCAGGTATATCCAAGCACACCGCAGG
Right flanking sequence: Indices 1808 -- 2307
CACCGCACAGGCCACCGCACACACAACAGACACAACAGGCACACCAGGTTGCACACGGCTTACAC
CCATATCCATCCAAGCCTTTATTGCGGTATACCCCCATACCGATCCACTCATCCACTCCACCCAA
CCATCCAAACTACACAACACCCATCCACGTCCACGTACCCACTGAATCAAGTACCCACCTATCCT
CGTCCACGACCCACACATCCACCGTACCCATAAAGAACCACCGTTCTTAGCATTACACACACGCA
CACACCCACACACACCCACACACATGCCTTCCACTGACTACACACCCGAAGGTGACTACCCCGAG
GACCCCCTCCCCAACCCAGACTCCGTCGACTCCGAGCTCTTCCTCAACCACCGCTACACCAAGCT
CGACGTCCTCACCAAGGACCTCTCCCAGGAGCTCGACCAGCTCAACACCCAGCTCCGCGACCTCG
TCAATGTGCTGTTTGACGACTTCGTCCGCTTAGGTAAGCTGATCA
Found at i:2091 original size:10 final size:10
Alignment explanation
Indices: 2066--2091 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
2056 TACACACACG
2066 CACACACCCA
1 CACACACCCA
2076 CACACACCCA
1 CACACACCCA
2086 CACACA
1 CACACA
2092 TGCCTTCCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.58, G:0.00, T:0.00
Consensus pattern (10 bp):
CACACACCCA
Left flanking sequence: Indices 1566 -- 2065
GGTGTGGTGTCGCGTTGGTGCGCGCGCACCGAGCCACGGTAGCACTCGTGGGTAGTGGACAGACC
TGCGGAGTCTCCGCTGTTTATTACCGTTTGGACCCGTGGTTCTTGGCAGTTTGCACGCTTCTGTT
GGTTGACTAGGACAAGACTCGCACGAGGTACCGCACAGGCATATCGCAGGTATATCCAAGCACAC
CGCAGGCACACCGCACAGGCACACACCGCACAGACACACACCGCACACACCGCACAGGCCACCGC
ACACACAACAGACACAACAGGCACACCAGGTTGCACACGGCTTACACCCATATCCATCCAAGCCT
TTATTGCGGTATACCCCCATACCGATCCACTCATCCACTCCACCCAACCATCCAAACTACACAAC
ACCCATCCACGTCCACGTACCCACTGAATCAAGTACCCACCTATCCTCGTCCACGACCCACACAT
CCACCGTACCCATAAAGAACCACCGTTCTTAGCATTACACACACG
Right flanking sequence: Indices 2092 -- 2591
TGCCTTCCACTGACTACACACCCGAAGGTGACTACCCCGAGGACCCCCTCCCCAACCCAGACTCC
GTCGACTCCGAGCTCTTCCTCAACCACCGCTACACCAAGCTCGACGTCCTCACCAAGGACCTCTC
CCAGGAGCTCGACCAGCTCAACACCCAGCTCCGCGACCTCGTCAATGTGCTGTTTGACGACTTCG
TCCGCTTAGGTAAGCTGATCAACTTGGAGGAGGACCCGAGCTGTCCCGACCTCCAGGGAGTCCGC
ACAGACCTTGGCCAGTACTTGGACCTGGTGGAACAGAAGCACCGCTCGCTCTCGGCCTCCCAGAG
CACCGCCGAGCGCGTGGTGGCCCACCGGCGCCGGCTCATCGCCCTCAAAACGGAGGCCAAGCTCG
GTTTGATCCTCAACGACTTGGTGGCTACGTTTGAGCAGCTGTTGGCTGCGCTGGCTGACGACGTC
CACCTCGTGGGCCTCTTTTTAGCGATCAAAACCACCTTTGCCAAG
Found at i:5800 original size:23 final size:22
Alignment explanation
Indices: 5770--5812 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
5760 GTCGTGCCAG
5770 CCCCCTGGCTGACCCCCTGGCAA
1 CCCCCTGGCTGA-CCCCTGGCAA
5793 CCCCCTGGCTGACCCCTGGC
1 CCCCCTGGCTGACCCCTGGC
5813 TGACCACTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.09, C:0.53, G:0.23, T:0.14
Consensus pattern (22 bp):
CCCCCTGGCTGACCCCTGGCAA
Left flanking sequence: Indices 5270 -- 5769
GCGCGTCACCCGCCTTTGCTGACCACTCCCGAGGAACAATGCCCCTCCAAGCTGCGGATACGAGA
GCCACTTACGAGCCCTCGAACCCAGATTACGACAGATGAACGCCAGACTATGGTAAAGAATCCCA
TTTGGCAGTTTGCAATTACAGCGAGTTTACCTGCCGCGGCTTTGTTTTGGCTCGGCTACCCCATT
GTGAGTGGATCCATGTAACATCCGGTGGGAACAAGGTTGAAGCGAGTGGAACAAGAGATTGTGTA
ATAACGAACAATAAAAAGCAGGAGAGCTGCTGGGGCCTTTGTGAGCGTGGCAGCCAGATTGAAAC
GTGCGTCGATTGAGGTACCATTGAATACGTTGAACAAGCCCACCGGCGTGTGTTGGCGGTATTGT
TGCGCAATATTGTCACCATTGCACATGAAGAAGCGAGTGTGGATCCAGCGTTTTCTCACGGGCTG
ACTATTGACCTCCTTGGCTGACATCCTCGCCGACAGTCGTGCCAG
Right flanking sequence: Indices 5813 -- 6312
TGACCACTGGTTGATCTCCAGACCCCCTTGCTTCCTTGGTTGACCAAATTTCGAAGCACCTGATG
AACCTCCTATCTTCCACCAAATAGTTTGGTTTGTCTCCAACCCAACAGCTTATCTAGTGTCAAGC
TAACTCCGTAGGCTCCTTTCTCCGTAGGCTCCCATCTCCGTAGGCTCCCTCTACCCTGACCTCCT
TCTTACCGTTCAGATTATTCCCATATATTTGTCTGGTAGTCAGACCCCTATCCTAAAAAGCGGCC
TCGTCGCCGTCTCCATCGTCTCCGCCGTCGTCATCGCCGTCGTCGAAGTACTTCTCAGCGTTGTA
GTCGTCCTCGTCGTCGTCGTCGTCGAACTCGTCGTCAACGTCCTCCTCAGGCTCCTCATCTTCGT
CCTCGTTCTTGGCGTCCTCAACGTCAGCCATGTTCTTCAAACGCTCAAGCATAGCAGCGGCCTCG
TCGTCGCCAGAGACGGTGTACTCCTTGAGCCCACCGTTGTCCCGG
Found at i:5814 original size:11 final size:12
Alignment explanation
Indices: 5770--5817 Score: 73
Period size: 11 Copynumber: 4.2 Consensus size: 12
5760 GTCGTGCCAG
5770 CCCCCTGGCTGA
1 CCCCCTGGCTGA
*
5782 CCCCCTGGC-AA
1 CCCCCTGGCTGA
5793 CCCCCTGGCTGA
1 CCCCCTGGCTGA
5805 -CCCCTGGCTGA
1 CCCCCTGGCTGA
5816 CC
1 CC
5818 ACTGGTTGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
11 21 0.66
12 11 0.34
ACGTcount: A:0.10, C:0.52, G:0.23, T:0.15
Consensus pattern (12 bp):
CCCCCTGGCTGA
Left flanking sequence: Indices 5270 -- 5769
GCGCGTCACCCGCCTTTGCTGACCACTCCCGAGGAACAATGCCCCTCCAAGCTGCGGATACGAGA
GCCACTTACGAGCCCTCGAACCCAGATTACGACAGATGAACGCCAGACTATGGTAAAGAATCCCA
TTTGGCAGTTTGCAATTACAGCGAGTTTACCTGCCGCGGCTTTGTTTTGGCTCGGCTACCCCATT
GTGAGTGGATCCATGTAACATCCGGTGGGAACAAGGTTGAAGCGAGTGGAACAAGAGATTGTGTA
ATAACGAACAATAAAAAGCAGGAGAGCTGCTGGGGCCTTTGTGAGCGTGGCAGCCAGATTGAAAC
GTGCGTCGATTGAGGTACCATTGAATACGTTGAACAAGCCCACCGGCGTGTGTTGGCGGTATTGT
TGCGCAATATTGTCACCATTGCACATGAAGAAGCGAGTGTGGATCCAGCGTTTTCTCACGGGCTG
ACTATTGACCTCCTTGGCTGACATCCTCGCCGACAGTCGTGCCAG
Right flanking sequence: Indices 5818 -- 6317
ACTGGTTGATCTCCAGACCCCCTTGCTTCCTTGGTTGACCAAATTTCGAAGCACCTGATGAACCT
CCTATCTTCCACCAAATAGTTTGGTTTGTCTCCAACCCAACAGCTTATCTAGTGTCAAGCTAACT
CCGTAGGCTCCTTTCTCCGTAGGCTCCCATCTCCGTAGGCTCCCTCTACCCTGACCTCCTTCTTA
CCGTTCAGATTATTCCCATATATTTGTCTGGTAGTCAGACCCCTATCCTAAAAAGCGGCCTCGTC
GCCGTCTCCATCGTCTCCGCCGTCGTCATCGCCGTCGTCGAAGTACTTCTCAGCGTTGTAGTCGT
CCTCGTCGTCGTCGTCGTCGAACTCGTCGTCAACGTCCTCCTCAGGCTCCTCATCTTCGTCCTCG
TTCTTGGCGTCCTCAACGTCAGCCATGTTCTTCAAACGCTCAAGCATAGCAGCGGCCTCGTCGTC
GCCAGAGACGGTGTACTCCTTGAGCCCACCGTTGTCCCGGTACTT
Found at i:5967 original size:16 final size:16
Alignment explanation
Indices: 5946--5991 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
5936 GTCAAGCTAA
**
5946 CTCCGTAGGCTCCTTT
1 CTCCGTAGGCTCCCAT
5962 CTCCGTAGGCTCCCAT
1 CTCCGTAGGCTCCCAT
5978 CTCCGTAGGCTCCC
1 CTCCGTAGGCTCCC
5992 TCTACCCTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.09, C:0.43, G:0.20, T:0.28
Consensus pattern (16 bp):
CTCCGTAGGCTCCCAT
Left flanking sequence: Indices 5446 -- 5945
TTGGCTCGGCTACCCCATTGTGAGTGGATCCATGTAACATCCGGTGGGAACAAGGTTGAAGCGAG
TGGAACAAGAGATTGTGTAATAACGAACAATAAAAAGCAGGAGAGCTGCTGGGGCCTTTGTGAGC
GTGGCAGCCAGATTGAAACGTGCGTCGATTGAGGTACCATTGAATACGTTGAACAAGCCCACCGG
CGTGTGTTGGCGGTATTGTTGCGCAATATTGTCACCATTGCACATGAAGAAGCGAGTGTGGATCC
AGCGTTTTCTCACGGGCTGACTATTGACCTCCTTGGCTGACATCCTCGCCGACAGTCGTGCCAGC
CCCCTGGCTGACCCCCTGGCAACCCCCTGGCTGACCCCTGGCTGACCACTGGTTGATCTCCAGAC
CCCCTTGCTTCCTTGGTTGACCAAATTTCGAAGCACCTGATGAACCTCCTATCTTCCACCAAATA
GTTTGGTTTGTCTCCAACCCAACAGCTTATCTAGTGTCAAGCTAA
Right flanking sequence: Indices 5992 -- 6491
TCTACCCTGACCTCCTTCTTACCGTTCAGATTATTCCCATATATTTGTCTGGTAGTCAGACCCCT
ATCCTAAAAAGCGGCCTCGTCGCCGTCTCCATCGTCTCCGCCGTCGTCATCGCCGTCGTCGAAGT
ACTTCTCAGCGTTGTAGTCGTCCTCGTCGTCGTCGTCGTCGAACTCGTCGTCAACGTCCTCCTCA
GGCTCCTCATCTTCGTCCTCGTTCTTGGCGTCCTCAACGTCAGCCATGTTCTTCAAACGCTCAAG
CATAGCAGCGGCCTCGTCGTCGCCAGAGACGGTGTACTCCTTGAGCCCACCGTTGTCCCGGTACT
TGGACACCGCCAAAAGCTTCTTCTTGGACACCCCCATCACCGAAAAGAGCTCCTGGGGGAACATC
TCAAGGGCAAACGGGTGGTCGTCAATGGTGCGTGCGGTTCTCTTGGGCTTGGTGTACCGGTCCAG
GTACCGGGCAATCCCATCGGCCTGGGTCGGGTGCTTGATCTCGGG
Found at i:6754 original size:10 final size:10
Alignment explanation
Indices: 6733--6805 Score: 50
Period size: 10 Copynumber: 7.3 Consensus size: 10
6723 CATGATGTGT
6733 GTGCTGGT--
1 GTGCTGGTGG
6741 GTGCTGGTGG
1 GTGCTGGTGG
6751 GTGCTGGTGCTGG
1 GTGCT-G-G-TGG
6764 GTG-TGGGTGG
1 GTGCT-GGTGG
6774 GTGCT--T-G
1 GTGCTGGTGG
6781 GTGCTGGTGG
1 GTGCTGGTGG
6791 GTGCTAGGTCGG
1 GTGCT-GGT-GG
6803 GTG
1 GTG
6806 GATGCTAGCG
Statistics
Matches: 54, Mismatches: 0, Indels: 18
0.75 0.00 0.25
Matches are distributed among these distances:
7 6 0.11
8 9 0.17
9 1 0.02
10 17 0.31
11 6 0.11
12 9 0.17
13 6 0.11
ACGTcount: A:0.01, C:0.11, G:0.56, T:0.32
Consensus pattern (10 bp):
GTGCTGGTGG
Left flanking sequence: Indices 6233 -- 6732
TGTTCTTCAAACGCTCAAGCATAGCAGCGGCCTCGTCGTCGCCAGAGACGGTGTACTCCTTGAGC
CCACCGTTGTCCCGGTACTTGGACACCGCCAAAAGCTTCTTCTTGGACACCCCCATCACCGAAAA
GAGCTCCTGGGGGAACATCTCAAGGGCAAACGGGTGGTCGTCAATGGTGCGTGCGGTTCTCTTGG
GCTTGGTGTACCGGTCCAGGTACCGGGCAATCCCATCGGCCTGGGTCGGGTGCTTGATCTCGGGG
TCCCGTTTCGACCGTTTTGTCCCGGCCAAACCCGGGTCGCTCTCGGTGAAAAAGAGCCCCTCGGC
CATGAGCCGTGAGAAGGCAATCTGCTGCTTGGCAGGGCCCATCTCCGCGGCCCGAATAGCGCCGT
TGACGGGGAGCACGATCAGCGCCTCGTCCAGGGCGTTGGATTGGACGTCGCTGTAGTCGAGCCCG
TACGGTAGCTTGTGTTTTGTGGATTTGAAGCCCAGCATGATGTGT
Right flanking sequence: Indices 6806 -- 7305
GATGCTAGCGTGCGCGGGTGGGTGCGGGAATGCGGCTGGTTGGTTTGTGGTGCCAGGGGTGGTAA
TGAAGGCTAGGTGGCCGGCTAATAGTAAGAACAAGACCGCTAGTGGAGACTAGGCTGGTACCGAT
GCAAAGCGAGGGCAGGTTACAGGTCGCATCGAAATCATCGCGCGCCGCACGAGATGCATCGTAGG
AGGAGTGGAGAGGAGTGGAGAGGAGTGGAGAGGAGTGGGAAGAAGTGGTGGATACGGACAAGTTG
GGAGATAAGGGGATTGGTGGTTTACGTAGAGTCACGCCTACACGACTTTCTCGGTGTCTTTCTCA
TATCTGGTTTTTGTCATCTTATCTTCCACCCCTCGCACCAGATCAGTGAAACACAGCCTGAGTAT
ACTTAGAGACTGAACCGACTGAACAGAATGAACAATCGAACACAAACCAGCGAGGACAAACCTTA
ATCAGCCAGTCATCGGACATCGCCCAGACCCTCGTCCCTATTTTC
Found at i:6776 original size:17 final size:17
Alignment explanation
Indices: 6756--6795 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
6746 GGTGGGTGCT
6756 GGTGCTGGGTG-TGGGTG
1 GGTGCTGGGTGCT-GGTG
*
6773 GGTGCTTGGTGCTGGTG
1 GGTGCTGGGTGCTGGTG
6790 GGTGCT
1 GGTGCT
6796 AGGTCGGGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 20 0.95
18 1 0.05
ACGTcount: A:0.00, C:0.10, G:0.57, T:0.33
Consensus pattern (17 bp):
GGTGCTGGGTGCTGGTG
Left flanking sequence: Indices 6256 -- 6755
GCAGCGGCCTCGTCGTCGCCAGAGACGGTGTACTCCTTGAGCCCACCGTTGTCCCGGTACTTGGA
CACCGCCAAAAGCTTCTTCTTGGACACCCCCATCACCGAAAAGAGCTCCTGGGGGAACATCTCAA
GGGCAAACGGGTGGTCGTCAATGGTGCGTGCGGTTCTCTTGGGCTTGGTGTACCGGTCCAGGTAC
CGGGCAATCCCATCGGCCTGGGTCGGGTGCTTGATCTCGGGGTCCCGTTTCGACCGTTTTGTCCC
GGCCAAACCCGGGTCGCTCTCGGTGAAAAAGAGCCCCTCGGCCATGAGCCGTGAGAAGGCAATCT
GCTGCTTGGCAGGGCCCATCTCCGCGGCCCGAATAGCGCCGTTGACGGGGAGCACGATCAGCGCC
TCGTCCAGGGCGTTGGATTGGACGTCGCTGTAGTCGAGCCCGTACGGTAGCTTGTGTTTTGTGGA
TTTGAAGCCCAGCATGATGTGTGTGCTGGTGTGCTGGTGGGTGCT
Right flanking sequence: Indices 6796 -- 7295
AGGTCGGGTGGATGCTAGCGTGCGCGGGTGGGTGCGGGAATGCGGCTGGTTGGTTTGTGGTGCCA
GGGGTGGTAATGAAGGCTAGGTGGCCGGCTAATAGTAAGAACAAGACCGCTAGTGGAGACTAGGC
TGGTACCGATGCAAAGCGAGGGCAGGTTACAGGTCGCATCGAAATCATCGCGCGCCGCACGAGAT
GCATCGTAGGAGGAGTGGAGAGGAGTGGAGAGGAGTGGAGAGGAGTGGGAAGAAGTGGTGGATAC
GGACAAGTTGGGAGATAAGGGGATTGGTGGTTTACGTAGAGTCACGCCTACACGACTTTCTCGGT
GTCTTTCTCATATCTGGTTTTTGTCATCTTATCTTCCACCCCTCGCACCAGATCAGTGAAACACA
GCCTGAGTATACTTAGAGACTGAACCGACTGAACAGAATGAACAATCGAACACAAACCAGCGAGG
ACAAACCTTAATCAGCCAGTCATCGGACATCGCCCAGACCCTCGT
Found at i:6789 original size:23 final size:23
Alignment explanation
Indices: 6733--6789 Score: 80
Period size: 23 Copynumber: 2.4 Consensus size: 23
6723 CATGATGTGT
6733 GTGCTGGTGTGCTGGTGGGTGCTG
1 GTGCTGGTGTGC-GGTGGGTGCTG
6757 GTGCTGGGTGTG-GGTGGGTGCTTG
1 GTGCT-GGTGTGCGGTGGGTGC-TG
6781 GTGCTGGTG
1 GTGCTGGTG
6790 GGTGCTAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 13 0.42
24 12 0.39
25 6 0.19
ACGTcount: A:0.00, C:0.11, G:0.56, T:0.33
Consensus pattern (23 bp):
GTGCTGGTGTGCGGTGGGTGCTG
Left flanking sequence: Indices 6233 -- 6732
TGTTCTTCAAACGCTCAAGCATAGCAGCGGCCTCGTCGTCGCCAGAGACGGTGTACTCCTTGAGC
CCACCGTTGTCCCGGTACTTGGACACCGCCAAAAGCTTCTTCTTGGACACCCCCATCACCGAAAA
GAGCTCCTGGGGGAACATCTCAAGGGCAAACGGGTGGTCGTCAATGGTGCGTGCGGTTCTCTTGG
GCTTGGTGTACCGGTCCAGGTACCGGGCAATCCCATCGGCCTGGGTCGGGTGCTTGATCTCGGGG
TCCCGTTTCGACCGTTTTGTCCCGGCCAAACCCGGGTCGCTCTCGGTGAAAAAGAGCCCCTCGGC
CATGAGCCGTGAGAAGGCAATCTGCTGCTTGGCAGGGCCCATCTCCGCGGCCCGAATAGCGCCGT
TGACGGGGAGCACGATCAGCGCCTCGTCCAGGGCGTTGGATTGGACGTCGCTGTAGTCGAGCCCG
TACGGTAGCTTGTGTTTTGTGGATTTGAAGCCCAGCATGATGTGT
Right flanking sequence: Indices 6790 -- 7289
GGTGCTAGGTCGGGTGGATGCTAGCGTGCGCGGGTGGGTGCGGGAATGCGGCTGGTTGGTTTGTG
GTGCCAGGGGTGGTAATGAAGGCTAGGTGGCCGGCTAATAGTAAGAACAAGACCGCTAGTGGAGA
CTAGGCTGGTACCGATGCAAAGCGAGGGCAGGTTACAGGTCGCATCGAAATCATCGCGCGCCGCA
CGAGATGCATCGTAGGAGGAGTGGAGAGGAGTGGAGAGGAGTGGAGAGGAGTGGGAAGAAGTGGT
GGATACGGACAAGTTGGGAGATAAGGGGATTGGTGGTTTACGTAGAGTCACGCCTACACGACTTT
CTCGGTGTCTTTCTCATATCTGGTTTTTGTCATCTTATCTTCCACCCCTCGCACCAGATCAGTGA
AACACAGCCTGAGTATACTTAGAGACTGAACCGACTGAACAGAATGAACAATCGAACACAAACCA
GCGAGGACAAACCTTAATCAGCCAGTCATCGGACATCGCCCAGAC
Found at i:7015 original size:10 final size:10
Alignment explanation
Indices: 7000--7038 Score: 78
Period size: 10 Copynumber: 3.9 Consensus size: 10
6990 TGCATCGTAG
7000 GAGGAGTGGA
1 GAGGAGTGGA
7010 GAGGAGTGGA
1 GAGGAGTGGA
7020 GAGGAGTGGA
1 GAGGAGTGGA
7030 GAGGAGTGG
1 GAGGAGTGG
7039 GAAGAAGTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.62, T:0.10
Consensus pattern (10 bp):
GAGGAGTGGA
Left flanking sequence: Indices 6500 -- 6999
TCGACCGTTTTGTCCCGGCCAAACCCGGGTCGCTCTCGGTGAAAAAGAGCCCCTCGGCCATGAGC
CGTGAGAAGGCAATCTGCTGCTTGGCAGGGCCCATCTCCGCGGCCCGAATAGCGCCGTTGACGGG
GAGCACGATCAGCGCCTCGTCCAGGGCGTTGGATTGGACGTCGCTGTAGTCGAGCCCGTACGGTA
GCTTGTGTTTTGTGGATTTGAAGCCCAGCATGATGTGTGTGCTGGTGTGCTGGTGGGTGCTGGTG
CTGGGTGTGGGTGGGTGCTTGGTGCTGGTGGGTGCTAGGTCGGGTGGATGCTAGCGTGCGCGGGT
GGGTGCGGGAATGCGGCTGGTTGGTTTGTGGTGCCAGGGGTGGTAATGAAGGCTAGGTGGCCGGC
TAATAGTAAGAACAAGACCGCTAGTGGAGACTAGGCTGGTACCGATGCAAAGCGAGGGCAGGTTA
CAGGTCGCATCGAAATCATCGCGCGCCGCACGAGATGCATCGTAG
Right flanking sequence: Indices 7039 -- 7538
GAAGAAGTGGTGGATACGGACAAGTTGGGAGATAAGGGGATTGGTGGTTTACGTAGAGTCACGCC
TACACGACTTTCTCGGTGTCTTTCTCATATCTGGTTTTTGTCATCTTATCTTCCACCCCTCGCAC
CAGATCAGTGAAACACAGCCTGAGTATACTTAGAGACTGAACCGACTGAACAGAATGAACAATCG
AACACAAACCAGCGAGGACAAACCTTAATCAGCCAGTCATCGGACATCGCCCAGACCCTCGTCCC
TATTTTCTTTACGTAAGTCAGCACGTGTCGCCCCCACCCGGTTGACAGTTCGCCAATAGTCACCT
CACCGGGCCAAACTGCAATTCCCCTGGCGATCTAGACCACCACACAGTTTTTCCGGGCAGACAGT
CACAAACCATCGCTGCTGATCGTATTTTCAGACACGGTGATGGTCGCCGTTGGCCGAGTGCCGTC
TAGGTGGTGCATAATCGTACATGGGCTCGTGGGGGATCCTACGGG
Found at i:7047 original size:20 final size:20
Alignment explanation
Indices: 7004--7048 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
6994 TCGTAGGAGG
*
7004 AGTGGAGAGGAGTGGAGAGG
1 AGTGGAGAGGAGTGGAGAGA
7024 AGTGGAGAGGAGTGG-GAAGA
1 AGTGGAGAGGAGTGGAG-AGA
7044 AGTGG
1 AGTGG
7049 TGGATACGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.31, C:0.00, G:0.58, T:0.11
Consensus pattern (20 bp):
AGTGGAGAGGAGTGGAGAGA
Left flanking sequence: Indices 6504 -- 7003
CCGTTTTGTCCCGGCCAAACCCGGGTCGCTCTCGGTGAAAAAGAGCCCCTCGGCCATGAGCCGTG
AGAAGGCAATCTGCTGCTTGGCAGGGCCCATCTCCGCGGCCCGAATAGCGCCGTTGACGGGGAGC
ACGATCAGCGCCTCGTCCAGGGCGTTGGATTGGACGTCGCTGTAGTCGAGCCCGTACGGTAGCTT
GTGTTTTGTGGATTTGAAGCCCAGCATGATGTGTGTGCTGGTGTGCTGGTGGGTGCTGGTGCTGG
GTGTGGGTGGGTGCTTGGTGCTGGTGGGTGCTAGGTCGGGTGGATGCTAGCGTGCGCGGGTGGGT
GCGGGAATGCGGCTGGTTGGTTTGTGGTGCCAGGGGTGGTAATGAAGGCTAGGTGGCCGGCTAAT
AGTAAGAACAAGACCGCTAGTGGAGACTAGGCTGGTACCGATGCAAAGCGAGGGCAGGTTACAGG
TCGCATCGAAATCATCGCGCGCCGCACGAGATGCATCGTAGGAGG
Right flanking sequence: Indices 7049 -- 7548
TGGATACGGACAAGTTGGGAGATAAGGGGATTGGTGGTTTACGTAGAGTCACGCCTACACGACTT
TCTCGGTGTCTTTCTCATATCTGGTTTTTGTCATCTTATCTTCCACCCCTCGCACCAGATCAGTG
AAACACAGCCTGAGTATACTTAGAGACTGAACCGACTGAACAGAATGAACAATCGAACACAAACC
AGCGAGGACAAACCTTAATCAGCCAGTCATCGGACATCGCCCAGACCCTCGTCCCTATTTTCTTT
ACGTAAGTCAGCACGTGTCGCCCCCACCCGGTTGACAGTTCGCCAATAGTCACCTCACCGGGCCA
AACTGCAATTCCCCTGGCGATCTAGACCACCACACAGTTTTTCCGGGCAGACAGTCACAAACCAT
CGCTGCTGATCGTATTTTCAGACACGGTGATGGTCGCCGTTGGCCGAGTGCCGTCTAGGTGGTGC
ATAATCGTACATGGGCTCGTGGGGGATCCTACGGGATCAGCGCAA
Found at i:8233 original size:20 final size:19
Alignment explanation
Indices: 8172--8234 Score: 71
Period size: 15 Copynumber: 3.5 Consensus size: 19
8162 GGTTGGCATT
8172 TCACTGGTTGACTTT--C-
1 TCACTGGTTGACTTTCACA
*
8188 -CACTGGTTGACTTTCTCA
1 TCACTGGTTGACTTTCACA
*
8206 TTACTGGTTGACTTTCCACA
1 TCACTGGTTGACTTT-CACA
8226 TCACTGGTT
1 TCACTGGTT
8235 AACCACTCGC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
15 14 0.36
17 1 0.03
19 13 0.33
20 11 0.28
ACGTcount: A:0.16, C:0.25, G:0.17, T:0.41
Consensus pattern (19 bp):
TCACTGGTTGACTTTCACA
Left flanking sequence: Indices 7672 -- 8171
AACACCCGGGGAATGGGGCCATGCTCCCCCAGCCACGCTCCCCCGACCGGGTATCCGGGTGGGGA
ATGTTTCATCTGGTGTTTCAGATACTCTTGAACCGCGCATCCACACCCACAGTGGCTGGTGCCCG
TCTACTCGGCTAACCGGTAGCCGCTACCGGCCCCCGCATTGTTGCGCTAAGCGCGCAATGACAGC
CTTAAATAGAATTAGCAATACCACCGGGCCCAGGGCAGATCTGCAGAGAGCCACCTGTCGCATCG
AGTTCCCGGTTTCCACACGCGTTCCTACATCCAGCCTCGACTCATCCCTGCAGCGCAAGCCGTTT
GGTGACTCACAAGCAACGGACCCCACAAACCCTATCAATTGTTGCCAAGGATTGTTGTTTGACGT
GATTGTTGACAACAGGAATTAACAATTGAAACAGTCCACTGAACTTACGAGTTATATCTGGTTGT
TTAGATTAGTTGCTGAGTCTCGCAGATATCTACAAGGTTGGCATT
Right flanking sequence: Indices 8235 -- 8734
AACCACTCGCATTACCAATTAGCCTTGCTGGTTGAATACCTCCTCGCTGGTTAATTTCCTCCTCA
CCGGTTAATCACCTCCCCCCTGGTTGATTGCCTCCTCACTGTTACCTCCTCAGTTTCCCTCCTCA
CCGGAAACTCCCTCACTGGTACCATCCCTCCAGTGAACCCTAATAAACCCATCCCATCACCACTT
AACCACACCATGTCCCAGTTCACCCACCTGAACACCGCCCGTCGCGGCCTGGTCGTCTACGGCCT
GGTCGGCAAGGGAGCCCTCTTCCTCCCGGAGGACTTTGTCGATGTCGACGCCACCGACGACGAGG
AGTCCGCGTTGCTCTCGCGCCAGACGTCGCACCACCTCTCGCGCCAGTCCTCCCGGCGCCAGTCC
CAGGTGCATCCCGACATCCTTGCCTCGGAACGGCTGCTTTTGGCCGACTTCAACATCCCTCCTCC
CTCCGCGGACGATGCGGTGGAGCTGGTGTTCTCCGAGGCCCTTGC
Found at i:8285 original size:19 final size:18
Alignment explanation
Indices: 8261--8315 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
8251 AATTAGCCTT
8261 GCTGGTTGAATACCTCCTC
1 GCTGGTT-AATACCTCCTC
*
8280 GCTGGTTAATTTCCTCCTC
1 GCTGGTTAA-TACCTCCTC
* *
8299 ACCGGTTAATCACCTCC
1 GCTGGTTAAT-ACCTCC
8316 CCCCTGGTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 3 0.10
19 27 0.90
ACGTcount: A:0.16, C:0.35, G:0.16, T:0.33
Consensus pattern (18 bp):
GCTGGTTAATACCTCCTC
Left flanking sequence: Indices 7761 -- 8260
CTCTTGAACCGCGCATCCACACCCACAGTGGCTGGTGCCCGTCTACTCGGCTAACCGGTAGCCGC
TACCGGCCCCCGCATTGTTGCGCTAAGCGCGCAATGACAGCCTTAAATAGAATTAGCAATACCAC
CGGGCCCAGGGCAGATCTGCAGAGAGCCACCTGTCGCATCGAGTTCCCGGTTTCCACACGCGTTC
CTACATCCAGCCTCGACTCATCCCTGCAGCGCAAGCCGTTTGGTGACTCACAAGCAACGGACCCC
ACAAACCCTATCAATTGTTGCCAAGGATTGTTGTTTGACGTGATTGTTGACAACAGGAATTAACA
ATTGAAACAGTCCACTGAACTTACGAGTTATATCTGGTTGTTTAGATTAGTTGCTGAGTCTCGCA
GATATCTACAAGGTTGGCATTTCACTGGTTGACTTTCCACTGGTTGACTTTCTCATTACTGGTTG
ACTTTCCACATCACTGGTTAACCACTCGCATTACCAATTAGCCTT
Right flanking sequence: Indices 8316 -- 8815
CCCCTGGTTGATTGCCTCCTCACTGTTACCTCCTCAGTTTCCCTCCTCACCGGAAACTCCCTCAC
TGGTACCATCCCTCCAGTGAACCCTAATAAACCCATCCCATCACCACTTAACCACACCATGTCCC
AGTTCACCCACCTGAACACCGCCCGTCGCGGCCTGGTCGTCTACGGCCTGGTCGGCAAGGGAGCC
CTCTTCCTCCCGGAGGACTTTGTCGATGTCGACGCCACCGACGACGAGGAGTCCGCGTTGCTCTC
GCGCCAGACGTCGCACCACCTCTCGCGCCAGTCCTCCCGGCGCCAGTCCCAGGTGCATCCCGACA
TCCTTGCCTCGGAACGGCTGCTTTTGGCCGACTTCAACATCCCTCCTCCCTCCGCGGACGATGCG
GTGGAGCTGGTGTTCTCCGAGGCCCTTGCCCAGCACAAGCTCGACGAAACCACCTCGAAAATCGA
GATCCGGGCCCTTGTCCGGGCCGCGGTGCCCCTCGTAGCCACCTT
Found at i:8314 original size:38 final size:38
Alignment explanation
Indices: 8264--8338 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
8254 TAGCCTTGCT
* * *
8264 GGTTGAATACCTCCTCGCTGGTTAATTTCCTCCTCACC
1 GGTTGAATACCTCCCCCCTGGTTAATTGCCTCCTCACC
*
8302 GGTT-AATCACCTCCCCCCTGGTTGATTGCCTCCTCAC
1 GGTTGAAT-ACCTCCCCCCTGGTTAATTGCCTCCTCAC
8339 TGTTACCTCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 3 0.09
38 29 0.91
ACGTcount: A:0.15, C:0.37, G:0.16, T:0.32
Consensus pattern (38 bp):
GGTTGAATACCTCCCCCCTGGTTAATTGCCTCCTCACC
Left flanking sequence: Indices 7764 -- 8263
TTGAACCGCGCATCCACACCCACAGTGGCTGGTGCCCGTCTACTCGGCTAACCGGTAGCCGCTAC
CGGCCCCCGCATTGTTGCGCTAAGCGCGCAATGACAGCCTTAAATAGAATTAGCAATACCACCGG
GCCCAGGGCAGATCTGCAGAGAGCCACCTGTCGCATCGAGTTCCCGGTTTCCACACGCGTTCCTA
CATCCAGCCTCGACTCATCCCTGCAGCGCAAGCCGTTTGGTGACTCACAAGCAACGGACCCCACA
AACCCTATCAATTGTTGCCAAGGATTGTTGTTTGACGTGATTGTTGACAACAGGAATTAACAATT
GAAACAGTCCACTGAACTTACGAGTTATATCTGGTTGTTTAGATTAGTTGCTGAGTCTCGCAGAT
ATCTACAAGGTTGGCATTTCACTGGTTGACTTTCCACTGGTTGACTTTCTCATTACTGGTTGACT
TTCCACATCACTGGTTAACCACTCGCATTACCAATTAGCCTTGCT
Right flanking sequence: Indices 8339 -- 8838
TGTTACCTCCTCAGTTTCCCTCCTCACCGGAAACTCCCTCACTGGTACCATCCCTCCAGTGAACC
CTAATAAACCCATCCCATCACCACTTAACCACACCATGTCCCAGTTCACCCACCTGAACACCGCC
CGTCGCGGCCTGGTCGTCTACGGCCTGGTCGGCAAGGGAGCCCTCTTCCTCCCGGAGGACTTTGT
CGATGTCGACGCCACCGACGACGAGGAGTCCGCGTTGCTCTCGCGCCAGACGTCGCACCACCTCT
CGCGCCAGTCCTCCCGGCGCCAGTCCCAGGTGCATCCCGACATCCTTGCCTCGGAACGGCTGCTT
TTGGCCGACTTCAACATCCCTCCTCCCTCCGCGGACGATGCGGTGGAGCTGGTGTTCTCCGAGGC
CCTTGCCCAGCACAAGCTCGACGAAACCACCTCGAAAATCGAGATCCGGGCCCTTGTCCGGGCCG
CGGTGCCCCTCGTAGCCACCTTCGTGCTCCAGAACTCGCTCTCTA
Found at i:10198 original size:41 final size:42
Alignment explanation
Indices: 10135--10221 Score: 131
Period size: 41 Copynumber: 2.1 Consensus size: 42
10125 CACTGAGCTC
* *
10135 TAGAGATAGAAGTAACGTTAGGCTTT-TTAAGCGTTTAAGAG
1 TAGAAATAGAAGTAACGCTAGGCTTTGTTAAGCGTTTAAGAG
* *
10176 TAGAAATAGAAGTGACGCTAGGCTTTGTTAAGCGTTTGAGAG
1 TAGAAATAGAAGTAACGCTAGGCTTTGTTAAGCGTTTAAGAG
10218 TAGA
1 TAGA
10222 TTGAGAGTAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 23 0.56
42 18 0.44
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (42 bp):
TAGAAATAGAAGTAACGCTAGGCTTTGTTAAGCGTTTAAGAG
Left flanking sequence: Indices 9635 -- 10134
TATTGCGGGGCTGACCCGGATCGCCAACTACTTGGGGGCTGGTTTGGCTCCCAACGCCAAGCGGG
CCACCCTGGTGGCTCTTGGCTCTGGTCTTTGCGTGGCTGCGTTCAACTGGGCGCTTGTGTTCTAC
TTCCGGTGGCCCATTGCCGCGCTCTTCACCGACGACGAGCAGGTGATCGAGGTGCTCCACAACGT
CATCTGGCTCATTGCGTTGATGCAGGTGGTGGACGCGATGAACGCGGTGCTGGCCGGGTGCTTGC
GTGGCCAGGGCCAGACCAAGGTTGGTGGCATCGTCAACTTGTTTGCCTACTACGTGGTGGGGCTT
CCGCTCTCGATCTGGCTCACGTTCTACTCGCCGTGGAAGGGCAACTTGGAGGGGTTGTGGGCCGG
GTGTGTTGCTGCGCTTGTGATTATCGCGGGCGTCCAGCTGTGGTACGCATTGGGTGCTAACTTCA
ACCGGTTGGTTGACTTGGCGCGGTTGCGCGGTGCCCACTGAGCTC
Right flanking sequence: Indices 10222 -- 10721
TTGAGAGTAGATTAAGAGAAGATTAAGATCGTCTGTGTGGACATCTTCACAGTAGGTTGCAATTT
CGCAGCCATTTCGGGGAGTGTGCAGGAGCCTGCATGTGTCCAGCCAATAAATGGCAACCAATTGC
AAAGCGAGTACTGAGTAGAGAAGTAGTTGGATAGCAGAGGGGAAATTGGCCTAAAAGGCTGTGTA
GGTGTTAAAGGCAGTTCGTTCTGCTTTGGTTTGATTGTTTTGCTACTGTGAAGACCGCTTCTGAA
TGGTTTGTGGGGACAGTTTGGTCCCACGGTAACCTCCGTAGTTCATTACGCTTTCCACAACCAGG
CAAACGCTAAGTGATCTGCTGGTGTTACTCTTGGTCGTCCCATCCACCCACTTGTTTGCTCCAGT
CGCAGCCAGGTCTACAACTACTTCGTCGGAACCAACCACCGTCTTCTCAAACTGGTAGCGCATAC
CTTCAGGAACACCACCACCAAACACGCCCAATCCCCCAAAATACA
Found at i:10246 original size:11 final size:11
Alignment explanation
Indices: 10214--10249 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
10204 TAAGCGTTTG
*
10214 AGAGTAGATTG
1 AGAGTAGATTA
10225 AGAGTAGATTA
1 AGAGTAGATTA
*
10236 AGAGAAGATTA
1 AGAGTAGATTA
10247 AGA
1 AGA
10250 TCGTCTGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.31, T:0.22
Consensus pattern (11 bp):
AGAGTAGATTA
Left flanking sequence: Indices 9714 -- 10213
CTTGGCTCTGGTCTTTGCGTGGCTGCGTTCAACTGGGCGCTTGTGTTCTACTTCCGGTGGCCCAT
TGCCGCGCTCTTCACCGACGACGAGCAGGTGATCGAGGTGCTCCACAACGTCATCTGGCTCATTG
CGTTGATGCAGGTGGTGGACGCGATGAACGCGGTGCTGGCCGGGTGCTTGCGTGGCCAGGGCCAG
ACCAAGGTTGGTGGCATCGTCAACTTGTTTGCCTACTACGTGGTGGGGCTTCCGCTCTCGATCTG
GCTCACGTTCTACTCGCCGTGGAAGGGCAACTTGGAGGGGTTGTGGGCCGGGTGTGTTGCTGCGC
TTGTGATTATCGCGGGCGTCCAGCTGTGGTACGCATTGGGTGCTAACTTCAACCGGTTGGTTGAC
TTGGCGCGGTTGCGCGGTGCCCACTGAGCTCTAGAGATAGAAGTAACGTTAGGCTTTTTAAGCGT
TTAAGAGTAGAAATAGAAGTGACGCTAGGCTTTGTTAAGCGTTTG
Right flanking sequence: Indices 10250 -- 10749
TCGTCTGTGTGGACATCTTCACAGTAGGTTGCAATTTCGCAGCCATTTCGGGGAGTGTGCAGGAG
CCTGCATGTGTCCAGCCAATAAATGGCAACCAATTGCAAAGCGAGTACTGAGTAGAGAAGTAGTT
GGATAGCAGAGGGGAAATTGGCCTAAAAGGCTGTGTAGGTGTTAAAGGCAGTTCGTTCTGCTTTG
GTTTGATTGTTTTGCTACTGTGAAGACCGCTTCTGAATGGTTTGTGGGGACAGTTTGGTCCCACG
GTAACCTCCGTAGTTCATTACGCTTTCCACAACCAGGCAAACGCTAAGTGATCTGCTGGTGTTAC
TCTTGGTCGTCCCATCCACCCACTTGTTTGCTCCAGTCGCAGCCAGGTCTACAACTACTTCGTCG
GAACCAACCACCGTCTTCTCAAACTGGTAGCGCATACCTTCAGGAACACCACCACCAAACACGCC
CAATCCCCCAAAATACACACAAGAAAAGACCCCAACCCCAACCTG
Found at i:11535 original size:16 final size:16
Alignment explanation
Indices: 11490--11538 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
11480 GCGATGGTTT
11490 TTGAGGATATAAGCCA
1 TTGAGGATATAAGCCA
* * *
11506 TTAATGATTATAAGCCG
1 TTGAGGA-TATAAGCCA
11523 TTGAGGATATAAGCCA
1 TTGAGGATATAAGCCA
11539 GATGTGGTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (16 bp):
TTGAGGATATAAGCCA
Left flanking sequence: Indices 10990 -- 11489
TCGACGAAGTCGGTGCCACCCTGGCGCCGCTTTTGCTGGCGGCGTACTTCATTGGTGCCCGCTGC
CAGCCCTACGGGGACGACTTTTTGATGTGCAAGCAGGAGAACAACGGCGGCGAGCTTGACTGTTT
GAAGGAGGGCCGTCGTGTCACCCGTTGCGCTGTCCAGGTGCTCAAGGACATCAACACCCACTGCT
TCGACGAGTTCAAATTGCACTACGAGTGTTTGGAGACGGAAAACCACCGCCAGGGCCACTGCCGT
GCCCTGGAGAAGGTGTTCAACAAGTGTGTGTTTGACAACTTGAAGCTTGAAAAGAAGATCCCCGG
TCCCGAGGCCCAGATCCACTTGAAGGAGAACCCGATCTACACCGGCGCCACGAAGGACAAAAAGA
TTACCGAGCAGTTCTTGGCCAAGCGTGACCAGCAGTAATTCATCTCATAGCATAAATAAATGACG
AACAGGACGGCGAGAGCGTAGGGACTAGGCTGAAAGCGATGGTTT
Right flanking sequence: Indices 11539 -- 12038
GATGTGGTAATAAGCCAGGTGAGCTATAAGCTGTAATGATTATAAAACAGTCCTATAAGCCAGTT
ATAAAAGAATTAAATGGGAAACGCCAGTTAGCTGGATGAGGATCAATGTGAATTACCTTAATGCA
CCTTGCTCAAGTGAGATTTCTCAATAAGGAGAATGTCAGGAAGACGCGTTATATTTAGCGTGACT
AGATAGGGGTTAGACGAGCGGGGAAGATGGAAGCGAATGGAAGGAGGGTGGGAGGGAAACAGAGG
GAAAATAGGAGGGAAAAGCTTCATGGTCATTTACTGTGGTAGCATGAGAATAAAATACTACGTGA
TAGTAGATTTTTGTCAGAATTAGCAAAACTACGAAGTACATCGAGTGTTAGAACAGCTTGACAGT
CCACTTGTCAAAAGTTCCTCTCCTATCCCATCACCCGTTTCAATCCCATTCATTCGCCTACGATC
TCTTTTCAATCATCTCTTGTTCATTAAACCTTCTCTACGACGGCG
Found at i:25577 original size:194 final size:194
Alignment explanation
Indices: 25221--25577 Score: 486
Period size: 194 Copynumber: 1.8 Consensus size: 194
25211 GGTAAGTTAT
* * *
25221 AAAGATTTCTGTATTGACTAAAAGTAAAGTTTTGTGTATTTATGGGAGAATTTTCTCCGTACGCT
1 AAAGATTTCTGTATTGACTAAAAGTAAAGTTTTGTGTAGTAATGAGAGAATTTTCTCCGTACGCT
* * *
25286 GCGCGCAGCGTTTGCAGCCATCGGCCTATAGCCGTGGCTAAGCCGTGAAAAAGAATCTTGGTCTA
66 GCGCGCAGCATTTGCAGCCATCGGCCTATAGCCGTGGCTAAGCCGTGAAAAAGAATCTTAGTCCA
* * *
25351 GGTCAATTGGTCTAGACCTAAGTTATTCCAACAATTAGATTCCAAAGGGGTTACAATCCCATCA
131 GGACAATTGGTCTAGACCTAAGTAACTCCAACAATTAGATTCCAAAGGGGTTACAATCCCATCA
* * * *
25415 AAAGATTTCTGTATTGACTAAAAGTGAAGTTTTTTGTAGTAATGAGAGCATTTTCTCCGTGCGCT
1 AAAGATTTCTGTATTGACTAAAAGTAAAGTTTTGTGTAGTAATGAGAGAATTTTCTCCGTACGCT
* ** * *
25480 GCGCGCAGCATTTGCAGCCATCGGCTTATTTCTGTGGCTAAGCCGTGAGGAAA-AA-CTTTAGTC
66 GCGCGCAGCATTTGCAGCCATCGGCCTATAGCCGTGGCTAAGCCGTGA-AAAAGAATC-TTAGTC
* *
25543 CAGGACAATTGGTTTAGAGCTAA-TAAACTCCAACA
129 CAGGACAATTGGTCTAGACCTAAGT-AACTCCAACA
25578 CTTCTCCATA
Statistics
Matches: 140, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
193 2 0.01
194 135 0.96
195 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (194 bp):
AAAGATTTCTGTATTGACTAAAAGTAAAGTTTTGTGTAGTAATGAGAGAATTTTCTCCGTACGCT
GCGCGCAGCATTTGCAGCCATCGGCCTATAGCCGTGGCTAAGCCGTGAAAAAGAATCTTAGTCCA
GGACAATTGGTCTAGACCTAAGTAACTCCAACAATTAGATTCCAAAGGGGTTACAATCCCATCA
Left flanking sequence: Indices 24721 -- 25220
AAAAAACTGTTTAAATAGTGAGTGTAGCCTCGCATCAACGTTAGAAAAAGCCATTTACACCCGCA
TAAAACGTGCTTCGCTCTATTCATTAAGAAGGATTTGATGGAATTATACCCCTATCGGGGTATAG
GGGAATAATTAACTTAAAAAACTGGAATTTAGGTTTATGTTTATTCGTATTCGGGGTACCCCGAG
AACATGGATGATTATTAGCAACGAATTTACCCACTATATAAGACCACCAGTTAGCTACGTACGTA
TCATCTTATTGTTGGAAAGACGTCTGGTTGCTGGCTCGACCGATGGCAGTCGAACGGGTCAGCAA
CACAGAGCTGTCATTCGCGAGAGAGTTCTCCTGGGGAGAAAAGGCCTGAGACATAGTTGTTGTCT
TAAGCGGTTCTTCTCTAATCAATTGGGTTACAGTGGTCTTAGGTTCTTACAGGGCAACGTCGGTA
TCTATACTATGAGTGGGATACTAAAGTTGCAAAAGGGTAAGTTAT
Right flanking sequence: Indices 25578 -- 26077
CTTCTCCATACTAACATCCTGACCGACATTTTAGGCTTCCGCCTTCCATAAAAATCGTCAAAGCT
ATCAAGATATAGGTACCTACATGGTGATGACTCTGTGCCTTATACGGTTTGCTTCTAAGTTTCCA
AATTCATAAAACTTAAATTTCACCAAAAACTGGAGGATGGTAAACCAGAAGATCTTGCCAAGCCA
TCAGCAACACGTGATAGAGCTATCTTAGAACGCGTTTTGCTACGCCTCGCAGTGACAAATACTTA
CACACCCTGGGCCGTCTTAGACTTCGGCAACGTCGACATGCGTACCAAAGTACGCAAAAACTGAC
GAAATAATCCCAAGAGTCAATAATATCTATCCAAACATTGCTTCCATGAATTGTAGCAGAATTTG
GTATACTACGAATATGACCTGCTCTCAGTTGTAAGCGGGTATTACATGATTTAGAACTACATTCC
TGTAATTGACAAGCTTCAACAGACGCCAAGCTTTTCCTGAAGTTT
Found at i:31749 original size:6 final size:6
Alignment explanation
Indices: 31738--31856 Score: 98
Period size: 6 Copynumber: 18.8 Consensus size: 6
31728 TCTTATTGGT
* * *
31738 GTGTTG GTGTTG GTG-TG TTGTTG TTGGT- GTGTTG GTGTTGG TGTGTTG
1 GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG
*
31786 GTGTTGG TGTGTTG GTGTTGG TGTGTTG GTGTCGG TGTGTTG GTGTTG
1 GTGTT-G -GTGTTG GTGTT-G -GTGTTG GTGT-TG -GTGTTG GTGTTG
* *
31834 GTGTTG TTGTTG GTGTTG TTGTT
1 GTGTTG GTGTTG GTGTTG GTGTT
31857 TTTGTTGCTG
Statistics
Matches: 94, Mismatches: 9, Indels: 20
0.76 0.07 0.16
Matches are distributed among these distances:
5 7 0.07
6 60 0.64
7 8 0.09
8 19 0.20
ACGTcount: A:0.00, C:0.01, G:0.47, T:0.52
Consensus pattern (6 bp):
GTGTTG
Left flanking sequence: Indices 31238 -- 31737
TGCACCCTGCAAGTCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAAAGAAAATC
AAAGAAGATGGGGGAAAAAAATCCCCCCAAGGAGGCTACAAAAGCTTGTCGTTAGCATGGTGATA
CTTGCTCACCACAGCCTCGGTGCTGTTGGTACTTCTGATGAAGTCTCTCGGCTGGGTCATTATCC
GTTGGCGCTTCGCGCCATGGTAATGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTTACTGG
TGGCGTCGCGACCCACCAGCTACAGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTA
CTCGATGGCCGACGGGCCGGGAGGTAGGGGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCAC
AGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGTTTCGCTTCCTTTGCCATATGA
GAGACGATATCAGAAGTACTAGCGGTACCACCCCCTCTTATTGGT
Right flanking sequence: Indices 31857 -- 32356
TTTGTTGCTGGTCGCTGTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCA
ATGGTATCCGATTCGATTCGTTGGATCGGGTGCTATTGGCGCCGTTTTTTCCCCCTGTTGGTGGT
GCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGAGGTA
GCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTTTGTAGTATATAGGATATGTACAG
GCTCGCTATAATCAACGCTTACTACGGTACCAACAGTAAAGTCACGTGACCCGGATCACACGACG
TGGAAGCCGCATTAGGCTATATAGCTCGTAAAGCGACTAACATAAGGTGTTATGTAATGCTCGTA
AAGTCTTCAGGAAATGAATGGTCATCGTATAGCTCGTCGTATAGTGGGGTGGTCGCTTGTTAGAG
GGGGCCGTTTTTACATGCAGACCTCTGAAATTTGTTAGAGGGGGC
Found at i:31752 original size:14 final size:14
Alignment explanation
Indices: 31733--31854 Score: 194
Period size: 14 Copynumber: 8.8 Consensus size: 14
31723 CCCCCTCTTA
31733 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
31747 TTGGTGTGTTGTTG
1 TTGGTGTGTTGGTG
31761 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
31775 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
31789 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
31803 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
31817 TCGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
31831 TT-G-GTGTTGTTG
1 TTGGTGTGTTGGTG
31843 TTGGTGTTGTTG
1 TTGGTG-TGTTG
31855 TTTTTGTTGC
Statistics
Matches: 100, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
12 10 0.10
13 2 0.02
14 83 0.83
15 5 0.05
ACGTcount: A:0.00, C:0.01, G:0.48, T:0.52
Consensus pattern (14 bp):
TTGGTGTGTTGGTG
Left flanking sequence: Indices 31233 -- 31732
TCGCTTGCACCCTGCAAGTCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAAAGA
AAATCAAAGAAGATGGGGGAAAAAAATCCCCCCAAGGAGGCTACAAAAGCTTGTCGTTAGCATGG
TGATACTTGCTCACCACAGCCTCGGTGCTGTTGGTACTTCTGATGAAGTCTCTCGGCTGGGTCAT
TATCCGTTGGCGCTTCGCGCCATGGTAATGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTT
ACTGGTGGCGTCGCGACCCACCAGCTACAGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGC
TTCTACTCGATGGCCGACGGGCCGGGAGGTAGGGGGTGCAATCTAGCGTCAGGATGGGCGGTATC
GCCACAGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGTTTCGCTTCCTTTGCCA
TATGAGAGACGATATCAGAAGTACTAGCGGTACCACCCCCTCTTA
Right flanking sequence: Indices 31855 -- 32354
TTTTTGTTGCTGGTCGCTGTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGT
CAATGGTATCCGATTCGATTCGTTGGATCGGGTGCTATTGGCGCCGTTTTTTCCCCCTGTTGGTG
GTGCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGAGG
TAGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTTTGTAGTATATAGGATATGTAC
AGGCTCGCTATAATCAACGCTTACTACGGTACCAACAGTAAAGTCACGTGACCCGGATCACACGA
CGTGGAAGCCGCATTAGGCTATATAGCTCGTAAAGCGACTAACATAAGGTGTTATGTAATGCTCG
TAAAGTCTTCAGGAAATGAATGGTCATCGTATAGCTCGTCGTATAGTGGGGTGGTCGCTTGTTAG
AGGGGGCCGTTTTTACATGCAGACCTCTGAAATTTGTTAGAGGGG
Found at i:44603 original size:39 final size:39
Alignment explanation
Indices: 44560--44802 Score: 342
Period size: 39 Copynumber: 6.2 Consensus size: 39
44550 CTCTGCTGGT
* * * * * *
44560 GACGCTTCTGCCTCCGCCACTGAGTCTGGCGACGGTTCC
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
*
44599 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCT
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
* * *
44638 GACGCCTCTGGTTCTGCCACTGAGTCTGGTGACGGTTCC
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
*
44677 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCT
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
* * *
44716 GACGCCTCTGGCTCTGCCACCGAGTCTGGTGACGGTTCC
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
* *
44755 GACGCCTCTGGCTCTGCCACCGAGTCCGGTGACGGCTCT
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
44794 GACGCCTCT
1 GACGCCTCT
44803 TCTACCGGCG
Statistics
Matches: 182, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 182 1.00
ACGTcount: A:0.10, C:0.36, G:0.30, T:0.23
Consensus pattern (39 bp):
GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
Left flanking sequence: Indices 44060 -- 44559
TACCCACAATGAAGTACCAATTGCTCGCTCTTGCTGCTGTTGCCCTCGCCGCTGACGGCGACTTT
GAGACCCGTAACCCCGAACAGATGTTGTCTTTCCTCCAGGAGAACACTGCTTCGATCCCCAGAGG
TTACTCTGACGTCTCCGCCTACATTACTGCCTACTCGAGATTGTACTCTGCCTACTCTGGTTCCA
TTCCCTTGAGAAACCAGGACGGTCAGAACGGTAACACCATCGGCGGTGGTGACGGTGACGACTCT
GGCTCTGGCTCTGGTGACGGCTCCGACGCCTCCTCTGACGTCGCTTCCGTTTCTGCCACCGCTAC
TGGCGGTGACGGCGACGACGCCTCCGAGACCGGTGCCTCTTCCACTGGTGACAACGACAACGACG
GTGACAACAACGGCGGTGCTGTTGGCGGTGCCGCCGGCTCTGGTGACAACGATGGTGACGACAAC
AACAACGACGGTGAGGACGGTGACAACGCCTCTGGCTCTGCTGGT
Right flanking sequence: Indices 44803 -- 45302
TCTACCGGCGACAACGACGGTGAGGAGGACGGTGCCGGTGGTGCTGGCTCTTCCGGTTCCGGTGA
CGGCGACGACTCCAAGGAGTCCGGCTCTGGTGACGGTGACGACTCCAAGGCTTCCGGCTCTGGCT
CTGGCTCTGGCTCCGACTCCAAGGAGTCTGGCGACAAGGGTGACGGTGACGACAAGTCTAAGTCT
TCTGACTCCGGCTCTAACTCGCTTGCTTACTCCGGTCTCTTCGCTGGTGTTGCCGTTCTTGGCGG
TCTCCTCATCTAAGAGTGCTAAAATTACGCTGTAGACGTTTATAATGTAATATCTAATAATGATT
TGAGTTAATTACTGGCGATTGTTCGCTTACTGTGGGAATTTTCGTTGACGCCTTCGCTGCAGCAT
TCGCGGCTAAATAATATTTCACACCGATGGTTGCTACTCAGTGCGACGATAAAAATAAGGGCCCA
GATAGTTGCCAATGCAATGGAACGCCTGTAATGGGCATAAATCTA
Found at i:44657 original size:78 final size:78
Alignment explanation
Indices: 44559--44802 Score: 425
Period size: 78 Copynumber: 3.1 Consensus size: 78
44549 GCTCTGCTGG
* * * *
44559 TGACGCTTCTGCCTCCGCCACTGAGTCTGGCGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
1 TGACGCCTCTGGCTCTGCCACTGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
44624 CCGGTGACGGCTC
66 CCGGTGACGGCTC
*
44637 TGACGCCTCTGGTTCTGCCACTGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
1 TGACGCCTCTGGCTCTGCCACTGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
44702 CCGGTGACGGCTC
66 CCGGTGACGGCTC
* *
44715 TGACGCCTCTGGCTCTGCCACCGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACCGAGT
1 TGACGCCTCTGGCTCTGCCACTGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
44780 CCGGTGACGGCTC
66 CCGGTGACGGCTC
44793 TGACGCCTCT
1 TGACGCCTCT
44803 TCTACCGGCG
Statistics
Matches: 158, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 158 1.00
ACGTcount: A:0.10, C:0.36, G:0.30, T:0.24
Consensus pattern (78 bp):
TGACGCCTCTGGCTCTGCCACTGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
CCGGTGACGGCTC
Left flanking sequence: Indices 44059 -- 44558
ATACCCACAATGAAGTACCAATTGCTCGCTCTTGCTGCTGTTGCCCTCGCCGCTGACGGCGACTT
TGAGACCCGTAACCCCGAACAGATGTTGTCTTTCCTCCAGGAGAACACTGCTTCGATCCCCAGAG
GTTACTCTGACGTCTCCGCCTACATTACTGCCTACTCGAGATTGTACTCTGCCTACTCTGGTTCC
ATTCCCTTGAGAAACCAGGACGGTCAGAACGGTAACACCATCGGCGGTGGTGACGGTGACGACTC
TGGCTCTGGCTCTGGTGACGGCTCCGACGCCTCCTCTGACGTCGCTTCCGTTTCTGCCACCGCTA
CTGGCGGTGACGGCGACGACGCCTCCGAGACCGGTGCCTCTTCCACTGGTGACAACGACAACGAC
GGTGACAACAACGGCGGTGCTGTTGGCGGTGCCGCCGGCTCTGGTGACAACGATGGTGACGACAA
CAACAACGACGGTGAGGACGGTGACAACGCCTCTGGCTCTGCTGG
Right flanking sequence: Indices 44803 -- 45302
TCTACCGGCGACAACGACGGTGAGGAGGACGGTGCCGGTGGTGCTGGCTCTTCCGGTTCCGGTGA
CGGCGACGACTCCAAGGAGTCCGGCTCTGGTGACGGTGACGACTCCAAGGCTTCCGGCTCTGGCT
CTGGCTCTGGCTCCGACTCCAAGGAGTCTGGCGACAAGGGTGACGGTGACGACAAGTCTAAGTCT
TCTGACTCCGGCTCTAACTCGCTTGCTTACTCCGGTCTCTTCGCTGGTGTTGCCGTTCTTGGCGG
TCTCCTCATCTAAGAGTGCTAAAATTACGCTGTAGACGTTTATAATGTAATATCTAATAATGATT
TGAGTTAATTACTGGCGATTGTTCGCTTACTGTGGGAATTTTCGTTGACGCCTTCGCTGCAGCAT
TCGCGGCTAAATAATATTTCACACCGATGGTTGCTACTCAGTGCGACGATAAAAATAAGGGCCCA
GATAGTTGCCAATGCAATGGAACGCCTGTAATGGGCATAAATCTA
Found at i:44928 original size:33 final size:33
Alignment explanation
Indices: 44852--44930 Score: 113
Period size: 33 Copynumber: 2.4 Consensus size: 33
44842 GGTGCTGGCT
* *
44852 CTTCCGGTTCCGGTGACGGCGACGACTCCAAGG
1 CTTCCGGCTCTGGTGACGGCGACGACTCCAAGG
** *
44885 AGTCCGGCTCTGGTGACGGTGACGACTCCAAGG
1 CTTCCGGCTCTGGTGACGGCGACGACTCCAAGG
44918 CTTCCGGCTCTGG
1 CTTCCGGCTCTGG
44931 CTCTGGCTCT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.14, C:0.32, G:0.34, T:0.20
Consensus pattern (33 bp):
CTTCCGGCTCTGGTGACGGCGACGACTCCAAGG
Left flanking sequence: Indices 44352 -- 44851
CTCTGACGTCGCTTCCGTTTCTGCCACCGCTACTGGCGGTGACGGCGACGACGCCTCCGAGACCG
GTGCCTCTTCCACTGGTGACAACGACAACGACGGTGACAACAACGGCGGTGCTGTTGGCGGTGCC
GCCGGCTCTGGTGACAACGATGGTGACGACAACAACAACGACGGTGAGGACGGTGACAACGCCTC
TGGCTCTGCTGGTGACGCTTCTGCCTCCGCCACTGAGTCTGGCGACGGTTCCGACGCCTCTGGCT
CTGCCACTGAGTCCGGTGACGGCTCTGACGCCTCTGGTTCTGCCACTGAGTCTGGTGACGGTTCC
GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCTGACGCCTCTGGCTCTGCCACCGAGTC
TGGTGACGGTTCCGACGCCTCTGGCTCTGCCACCGAGTCCGGTGACGGCTCTGACGCCTCTTCTA
CCGGCGACAACGACGGTGAGGAGGACGGTGCCGGTGGTGCTGGCT
Right flanking sequence: Indices 44931 -- 45430
CTCTGGCTCTGGCTCCGACTCCAAGGAGTCTGGCGACAAGGGTGACGGTGACGACAAGTCTAAGT
CTTCTGACTCCGGCTCTAACTCGCTTGCTTACTCCGGTCTCTTCGCTGGTGTTGCCGTTCTTGGC
GGTCTCCTCATCTAAGAGTGCTAAAATTACGCTGTAGACGTTTATAATGTAATATCTAATAATGA
TTTGAGTTAATTACTGGCGATTGTTCGCTTACTGTGGGAATTTTCGTTGACGCCTTCGCTGCAGC
ATTCGCGGCTAAATAATATTTCACACCGATGGTTGCTACTCAGTGCGACGATAAAAATAAGGGCC
CAGATAGTTGCCAATGCAATGGAACGCCTGTAATGGGCATAAATCTAAGCAGTGAATGTTTCTTT
GCCACAGGTGGGTGAAATCGAAAACAGAATTGAAGTGCTCCCCACACGTCAATTATGCGATCAAG
AGTTTTACGATTACACGAGATTAGGAGCACTGCACTTCTCGTAGT
Found at i:52790 original size:13 final size:13
Alignment explanation
Indices: 52758--52790 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
52748 CATCGGACCT
*
52758 CTATCCCAGCCTC
1 CTATTCCAGCCTC
52771 C-ATTCCAGCCTC
1 CTATTCCAGCCTC
52783 CTATTCCA
1 CTATTCCA
52791 CCGCCCCGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.18, C:0.48, G:0.06, T:0.27
Consensus pattern (13 bp):
CTATTCCAGCCTC
Left flanking sequence: Indices 52258 -- 52757
AAAACCGGGGTAGCGGTGTCTAGCCGTCGGCTAGTCTAACTTTATTGGTAGGGGTACATGCGTAA
CACCGCATGGTATGCATGGTGAGCCGAGAGGACGGGGATGACGATAGGCGTTGCAAGGGCACGTA
GGTGTATTGTTTTTGCTGGTGGGTCATCGGTGAGCCAGTGATCACTTGGGTTTGTTGAAGTAAAT
CTGAGGAGACAGCGATATTCGCAATACCACGGGAGCCAACGTGGTACGTCTGATAACGAGGAATT
TTGGGAGAGTGTCAAATTATCCAACAGTGCTTCCAGCTTTTACATGCTTACCCGCCACACATAGG
TGATCAATCTCGAGGCTTGCGAACAGTATGGTTGATCTAATGGCTTGCCAATTGTGTTCAACCTC
AATGCTACCCTTTGGTCGTGGCAATGGTACCCACCACATCATCACATCCTCTCGACCGTACTCAA
TTTTTGGCCCATCTCAACTACAAGCTTAGTGATACCATCGGACCT
Right flanking sequence: Indices 52791 -- 53290
CCGCCCCGTCGTCGTGTCTGCTCCCTTCCCCTTCTGCTCCTCCGGTAGCGCGACGGTTCATAACC
AGGCATCGTATGCACCAGACCACCAGCACGTCTCCAGAGAACCATGTTACGGATCCTGGTGCGGC
TAAAGTCGCTGAAAACCTCGTTCCTCCCGCCTGAACTCCGCCGTCTGGCCAAACGGCTTGACATC
GGGCCACTTCCCACCCCCACGAAACCCACGCCTTCCCCCCAACCCTCTGCTAAAGATGGGGCCCT
GAAGGTCGCTCTCGTCAAGGAGATCCTCGGGGAGGTCACTCTGTGGAAGAAGCCCGGCTACTACG
ACCCGGCCAACACCTCGTTGGATCTCACCCGCCCCAACCACGAGTTGTGGGACGACATCTACGCG
GGCCTGCTACAACGGTACCGTCTTCGGTACAAGCAGCCGTCCACCGAGTGGACCCGCCGGGCTGG
GGGTGTCCACACGGTGGAAGATCTCACCTCAGCTGTGTCGTCTGA
Found at i:58387 original size:12 final size:12
Alignment explanation
Indices: 58366--58404 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
58356 CTCTTAGGGA
*
58366 CTGAGCGTATGT
1 CTGAGTGTATGT
58378 CTGAGTGTATGT
1 CTGAGTGTATGT
58390 CTGAGTGTATGT
1 CTGAGTGTATGT
58402 CTG
1 CTG
58405 GCGTATGCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.15, C:0.13, G:0.33, T:0.38
Consensus pattern (12 bp):
CTGAGTGTATGT
Left flanking sequence: Indices 57866 -- 58365
AGGTGCGAGTATAAAAGAGGGGCGAATTTGCCAATTCTAGTTTTTTTTTCTTTGTCGATATACTC
TATGGGATCATTTTCTATAGTGAATATCTCTCTTTGACTCTATAAAAGAGCCACTGAACCCAACT
TGGTTGATGAGATAGATACCCTTGTGCCCTCAAAGTGAGAACGTTTTTGCTTGACCATGTGCTCC
TAGCAGCCTGGCCATCTCAAATTTGCCGAACACCACGGGCTGTCGCAAGACGGCCTAGTTCGGAG
CGATGATCTTTACCCCATTGCGTATGCTTCTTCGGGAGAAACGCTTTGGGGTGGGCGCAAGTGGC
TGTCTGACAAGCTGGGTTTAGCAAGAGAGACGATTGATGTTCGACCTTCTGGTTGTCCGCCTGGC
GGTGGCTAACCAGCAGATCAAACATGGTCTTGCCCACGTAGGAAACAAGAAAAAACATGGTGAAG
TGGTCGAGGTTGATGGTGGCGTGTAGTTGGTGGGGCTCTTAGGGA
Right flanking sequence: Indices 58405 -- 58904
GCGTATGCCGTGGTCGGCCTTGCGATGACCTGTTGATCCGAAAATGTCTTAACTCCGGAGTTGTT
CCGAAATGCTGTAACGTCTAGCTTGGAAGTGTTTTACCGAAACGGCCCGATAAAGTCTCAAATTG
TCCAAATTGTCCAAACAATCCAAATAGGCTTAACCGGTCTATGACTCGTAACCTGTAGCTCGTAA
CTCACTCTGTGACCTGTTCTGAACCGTCAGAGCCACCCAAAGCAGTACCCTCTACACCACACCAA
ACCGCATATATACCCCGATTACGCGCTTAGTCAACCCACCAGCACCGCCCGCGACCAGGGTGGCT
AGGGCCATCTGCGTCGCGTGCCCGCCTAGGACACATGCGCGCTTACTACAATGGCCCTAGCCACG
CTGGTCGCGGACGCTGCGCCCACCCCACACCCGCGCTCGGTCGCCTTCCCTTCCGGGACACCTAG
GCGCTTAGTCACCGCCAAGCCCCCGTTACTAACATTACAAACGTG
Found at i:60265 original size:21 final size:21
Alignment explanation
Indices: 60239--60292 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
60229 GCCAGTTCCA
60239 GCCCGGCTACGACCAAAACCG
1 GCCCGGCTACGACCAAAACCG
* *
60260 GCCCGGCTACGACCAGACCCG
1 GCCCGGCTACGACCAAAACCG
*
60281 GCCCAGCTACGA
1 GCCCGGCTACGA
60293 GCGCAAGGCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.44, G:0.26, T:0.06
Consensus pattern (21 bp):
GCCCGGCTACGACCAAAACCG
Left flanking sequence: Indices 59739 -- 60238
CTGTTTTTGCCCAAGAACATCGTGCTCCAGTTCACCAACGTGGCCAACTTCTACTTCCTTGTGTT
GATTATCTTGGGTGCCTTCACCATTTTCGGCGTCGACCTGCCTGGGTTGGCAGCAGTGCCGCTTA
TTGTCATTGTGTGTATTACGGCGGCCAAGGACGCCTTCGAGGACTACCGCCGGGCCCTGCTGGAC
TCCGAGCTCAACAACTCGCCCGTGCACCTCGTGGTGGGACTCGACAACGCCAACGTGGTCCACCT
CCCGCCCACCGCGCTCCAGAAGTTCAATCTGGCGCTCGGGAGCGTGTTTGCCGGGATGTGGCGCG
GGATCAAGCGTGCGTTCATCGCTGTGTTCTTCACCAAGGCCGCGAAGCAGAAGTTGCACGACCAG
GAGGTGGCCGACCACGACTTGGCCCTCCGGCGGGTGAGCACGGTGGAGTCGCGGGTGAGCCCACG
CGCGAGCTACGAGCGCAAGGACGCCAACCAGCCTGGCCAGTTCCA
Right flanking sequence: Indices 60293 -- 60792
GCGCAAGGCGTCGTCACCACTTCCCCACTACGAGACGGCCACCGACGCACTCAACCAGCCCGCCA
ACCGCGGAAGCGTGCTCCTGCCGCGCCACAGCGTCTACAGCCCGCGGCGGCTGCTCCAGCTGGCG
GCCCTGCGGCTCCACCCGACCCAGATCGTGCCCCACACCATCATCCTGCCCGAGTTGGTGCGGGA
CAACGGGGACGCGGGCAACGTGCTGAAGTTCAAGAACCGGCGGTGGAAGGACATCGAGGTGGGGT
CGTTTGTGCGGATCCGCGCCAACGAGGAGATGCCCGCGGACCTCATTTTGTTGTCGCTGTCGGAC
CCCGAGGGGGGCTGTCTGGTGGAAACAAAGAACTTGGACGGCGAAACCAACTTGAAGCCGCGCCA
GCTGGTGGCGTGCGGTGGCACCAGCGTCATCAAACGGCCCACCGACCTCGGCAACACCCGGTTCT
GGGTCGAGTGCGACGCACCCAACCTGCACTTGTACGAGTTCAAGG
Found at i:64492 original size:12 final size:12
Alignment explanation
Indices: 64475--64509 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
64465 ACTCCCCACC
*
64475 CTTCTCTTCATT
1 CTTCTCTTCACT
*
64487 CTTCTCTTCGCT
1 CTTCTCTTCACT
64499 CTTCTCTTCAC
1 CTTCTCTTCAC
64510 ACTCACTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.40, G:0.03, T:0.51
Consensus pattern (12 bp):
CTTCTCTTCACT
Left flanking sequence: Indices 63975 -- 64474
TTGCCGCAAGCAGACACGCTTATGAAATATCACTCTGCCACTTCGCGTCAACAAGTGGTTTAATT
GTTCGTCATTAATAAAAATAATAGATAGTGAAGGATGCGAGGTTCGAACTCGCGCGGACAAACGT
CCAACCGATCTTAAGTCGGTCGCCTTAGACCACTCGGCCAACCCTCCAAAACGCACGATTTTTGG
AAATTTTGGATATGTAGGGGTAGAGTAATGAAGGGGTCAGAGAAGTTTTTTTTTTGATCTCGCAA
TTGTATAAATTAGTTTTTGGTGTTTCAAATACCGTTAATAAGGCTATGGAGTATTTAAATGTAGC
AATTGCTCCACATATTGGCAATTCTACGTGGTTTCTCAAAATTTTGGCAAATCGATCGAGCCTAA
TAATTCCCCCAAATTTCACTCAAATCCTACAAAAATCTCCAACGCTCTGGTCACATTCTTAAACC
CTAGCAACTCTATAAATTCCAATACTAATACAATCACTCCCCACC
Right flanking sequence: Indices 64510 -- 65009
ACTCACTCTTCTTCGCAAAGAGCTTCGCGTTGGCCAAGAACTTCGCGAGATTGGGCTTGGCCACC
ACCGCCGCCACCTCGGGGAACTCGTAGCCCTCGTCGGTCTTCACCGGCTGCATCGCCGCAAGCCG
ACGCCGGTTGGCCTCGTCCCCATGCACCTGCTCGTAGTCCGCCCACGCCTGGAGAAGCGCGATGT
GCGCCTGGTCGTCACCACTGACCCGGAACGCCTCGGCAGCCCGCGTGAACACCGCACGGGTCTTG
TCGCGGTGGCTGTTGGTAATCTCCACCTCGAGCTCGTCGGCATCGGACGCATTGAACGCATCCAA
CTGCTCGTCGGTGGGAATGGCCGACTCCCACAACGCATAGGCCACCCAGTCGCCCACCAGCGCCT
CGGGCGCCCCCACCGTCCGCTCGTACACCTCGCGAGCCTCGGGATACAACAACTCGTCGGTGAAC
CAGTCCACGGCGAACCGGCGCGCCTGGGCATCGGGCGCGGACGCC
Found at i:66528 original size:18 final size:17
Alignment explanation
Indices: 66502--66540 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
66492 GCGCCAGATC
66502 GAAGAGGTGGTGGAGAAG
1 GAAG-GGTGGTGGAGAAG
66520 GAA-GG-GGTGGAGAAG
1 GAAGGGTGGTGGAGAAG
66535 GAAGGG
1 GAAGGG
66541 GTGGAGGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.65
16 4 0.20
18 3 0.15
ACGTcount: A:0.33, C:0.00, G:0.59, T:0.08
Consensus pattern (17 bp):
GAAGGGTGGTGGAGAAG
Left flanking sequence: Indices 66002 -- 66501
AAAGTCGAGGTAGGCCTCCCACGCCACGGACGGGGGACGCCATTCGAGCCACCGCTCGAACACCA
GGCGGGTTTTGGGGAAGTTCTTGAGCATCTCCTCCGTCTGCACGTACATGAACCACAACTTCTGC
TCGTGGGGAAGCACGGTGACCGCCCGGTCGAGCAAGTTTCGGGCGTGGTTCACGGCCTTGAGCGC
GAGCTCAAACCGGATGTAGTGGACCCAGAGGGGCACGTGGGCGATGTCGGCGTCGAGTGCCCGTT
CGTAGATCGAGCGGGCCCGGGCGTAGTCGTGGTTCTCCTCGGCCTCCCATCGGGCGTAGCGGAGC
CACAGGCCGAAAGCCTTGGGATTGCGGCCCACCAGCCGCTCAAAGTCACGGCGTTTGACGAGCTG
CCACAGCCGGAGCTCCTCGAGGTCCGCAGCCTCGTGGAGCCGCGGAGCCTGGGCCGGGGGCTCGG
GTCTGGTTTCGGTCGCCATGGGTCAGATGAGATTCGCGCCAGATC
Right flanking sequence: Indices 66541 -- 67040
GTGGAGGGAGGGATGGAGAAGGAAGGGATGGAAGAGAATGGGTGTGTGGTGTGGGTTGGTGTTGT
GGGTTGGAATTGGTGGTTTGGGTAGTAGTTTGGTTTAGTTGTGTTTGGGCTGTTGTGTTTGGATA
GTTTCCTGGTGGCTAGTTGGTTATATTTAGTAGCGCGTGTATGGGAAGTAAATAGAGTCGACTCA
ATGGCGATGAAAAAGTAAACTGGGAATGAAAGCTGCCTTGGTTTTGGTTCATAGGTCAATCAGTG
ACGCCAATGTGTGCCAATTTTGACTGTTGGTGTTCCACCCTGAACACCTTCTCACCCAACACCTT
TCTAGAGCCTCCACTCACTCGAGCCTCCACCTACTCGAGTCCACCCCTACACCGCTAAACCTTCT
CCAAATCGCGCCCCACATCATTCTTTACCTGCCACTGTGCCCTCAACACCCGCCTCCCGGCCTAC
ACCATACTATTCTATGCGTTTATTAGATTTTTCATTCATGACGGT
Found at i:66550 original size:19 final size:15
Alignment explanation
Indices: 66510--66572 Score: 87
Period size: 15 Copynumber: 4.4 Consensus size: 15
66500 TCGAAGAGGT
66510 GGTGGAGAAGGAAGG
1 GGTGGAGAAGGAAGG
66525 GGTGGAGAAGGAAGG
1 GGTGGAGAAGGAAGG
66540 GGTGGAG--GG-AGG
1 GGTGGAGAAGGAAGG
*
66552 GATGGAGAAGGAAGG
1 GGTGGAGAAGGAAGG
*
66567 GATGGA
1 GGTGGA
66573 AGAGAATGGG
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
12 9 0.20
13 2 0.05
14 2 0.05
15 31 0.70
ACGTcount: A:0.32, C:0.00, G:0.60, T:0.08
Consensus pattern (15 bp):
GGTGGAGAAGGAAGG
Left flanking sequence: Indices 66010 -- 66509
GGTAGGCCTCCCACGCCACGGACGGGGGACGCCATTCGAGCCACCGCTCGAACACCAGGCGGGTT
TTGGGGAAGTTCTTGAGCATCTCCTCCGTCTGCACGTACATGAACCACAACTTCTGCTCGTGGGG
AAGCACGGTGACCGCCCGGTCGAGCAAGTTTCGGGCGTGGTTCACGGCCTTGAGCGCGAGCTCAA
ACCGGATGTAGTGGACCCAGAGGGGCACGTGGGCGATGTCGGCGTCGAGTGCCCGTTCGTAGATC
GAGCGGGCCCGGGCGTAGTCGTGGTTCTCCTCGGCCTCCCATCGGGCGTAGCGGAGCCACAGGCC
GAAAGCCTTGGGATTGCGGCCCACCAGCCGCTCAAAGTCACGGCGTTTGACGAGCTGCCACAGCC
GGAGCTCCTCGAGGTCCGCAGCCTCGTGGAGCCGCGGAGCCTGGGCCGGGGGCTCGGGTCTGGTT
TCGGTCGCCATGGGTCAGATGAGATTCGCGCCAGATCGAAGAGGT
Right flanking sequence: Indices 66573 -- 67072
AGAGAATGGGTGTGTGGTGTGGGTTGGTGTTGTGGGTTGGAATTGGTGGTTTGGGTAGTAGTTTG
GTTTAGTTGTGTTTGGGCTGTTGTGTTTGGATAGTTTCCTGGTGGCTAGTTGGTTATATTTAGTA
GCGCGTGTATGGGAAGTAAATAGAGTCGACTCAATGGCGATGAAAAAGTAAACTGGGAATGAAAG
CTGCCTTGGTTTTGGTTCATAGGTCAATCAGTGACGCCAATGTGTGCCAATTTTGACTGTTGGTG
TTCCACCCTGAACACCTTCTCACCCAACACCTTTCTAGAGCCTCCACTCACTCGAGCCTCCACCT
ACTCGAGTCCACCCCTACACCGCTAAACCTTCTCCAAATCGCGCCCCACATCATTCTTTACCTGC
CACTGTGCCCTCAACACCCGCCTCCCGGCCTACACCATACTATTCTATGCGTTTATTAGATTTTT
CATTCATGACGGTAACTTAATCCTTCTTGATCAAGTCGAGGTTTT
Found at i:66891 original size:16 final size:16
Alignment explanation
Indices: 66870--66904 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
66860 CACCTTTCTA
66870 GAGCCTCCA-CTCACTC
1 GAGCCTCCACCT-ACTC
66886 GAGCCTCCACCTACTC
1 GAGCCTCCACCTACTC
66902 GAG
1 GAG
66905 TCCACCCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.20, C:0.46, G:0.17, T:0.17
Consensus pattern (16 bp):
GAGCCTCCACCTACTC
Left flanking sequence: Indices 66370 -- 66869
AGTCACGGCGTTTGACGAGCTGCCACAGCCGGAGCTCCTCGAGGTCCGCAGCCTCGTGGAGCCGC
GGAGCCTGGGCCGGGGGCTCGGGTCTGGTTTCGGTCGCCATGGGTCAGATGAGATTCGCGCCAGA
TCGAAGAGGTGGTGGAGAAGGAAGGGGTGGAGAAGGAAGGGGTGGAGGGAGGGATGGAGAAGGAA
GGGATGGAAGAGAATGGGTGTGTGGTGTGGGTTGGTGTTGTGGGTTGGAATTGGTGGTTTGGGTA
GTAGTTTGGTTTAGTTGTGTTTGGGCTGTTGTGTTTGGATAGTTTCCTGGTGGCTAGTTGGTTAT
ATTTAGTAGCGCGTGTATGGGAAGTAAATAGAGTCGACTCAATGGCGATGAAAAAGTAAACTGGG
AATGAAAGCTGCCTTGGTTTTGGTTCATAGGTCAATCAGTGACGCCAATGTGTGCCAATTTTGAC
TGTTGGTGTTCCACCCTGAACACCTTCTCACCCAACACCTTTCTA
Right flanking sequence: Indices 66905 -- 67404
TCCACCCCTACACCGCTAAACCTTCTCCAAATCGCGCCCCACATCATTCTTTACCTGCCACTGTG
CCCTCAACACCCGCCTCCCGGCCTACACCATACTATTCTATGCGTTTATTAGATTTTTCATTCAT
GACGGTAACTTAATCCTTCTTGATCAAGTCGAGGTTTTCGTAGACACGGCCAGACTTTTTGTACA
AGTCGGCGGCAGTGACACCCGACTTGTTGGCCTCGTTGTGCTGCAACTGCTTCAACATGAGCTTG
ACCTGCGCCCGCTCCTTGGTCCCGTGGAGACACTCGTAGTAGTCGTCGTACTGGGGGATGCACTG
CTTCTTGGACGAGGTGTCCGCCGAGGTGTAGCACGCCGCAAGCGTCTGGAACTCGTAAAAGCACT
TTCTCGTGCCGCCGGATCTCGAAATGGGCTCCATATTAGTATAGGGTTTTTTTTAATTGGTTGAA
TTCGTTTGGTTGAAGTGCGAAAAACCGTGCGGCGCGTACAGGAGG
Found at i:71625 original size:15 final size:17
Alignment explanation
Indices: 71605--71647 Score: 63
Period size: 15 Copynumber: 2.6 Consensus size: 17
71595 AACACGCAAC
71605 CACGCTCGTCAG-T-CT
1 CACGCTCGTCAGTTCCT
71620 CACGCTCGTCAGTTCCT
1 CACGCTCGTCAGTTCCT
*
71637 CACACTCGTCA
1 CACGCTCGTCA
71648 CGCTGTCACG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 12 0.48
16 1 0.04
17 12 0.48
ACGTcount: A:0.16, C:0.42, G:0.16, T:0.26
Consensus pattern (17 bp):
CACGCTCGTCAGTTCCT
Left flanking sequence: Indices 71105 -- 71604
AGGAGGTGGGGGAGAGGATGGGATATAAGGGTGGGGAGAGGCTGTGGTGTGTTTATGTTGTTGGT
GGGTAGTGGGTGTGTGTGTGTATGGGTAGTGGTGGTGGTAGGGTTTGTATTTTTGGTGTTGCGTT
CAGTGTTTGGTGATGGTGCGTAGGTAGTGAGGAGACTGTAGGGTGGGAAAGAAGGTCAATTGGGT
GGAAGGGGCGAAGCAGTGTGGTGGTAGGTTTAGGGAGGGAAAGTCGGTGGGGTTTCCGGTGTCAT
TGTTGCCTTAGTATCGTCTTTTGGTGTCTTCTACGGAATGCAATGCTATGTCACTCGCAAACAAT
ACACACTACAATGGACGTTCCTGAGCCAATGTGTAAGGTGAATGTGGAGCGTTAGCGTGTGACTT
GGCCATACAACACCCAGCACCATCCTACGTTACTTGGCTCTCCAACGCGTAAGGAAGCTCGCCAC
AGCACAGACCCACCGGTAGTACGCAACCACGCGATAACACGCAAC
Right flanking sequence: Indices 71648 -- 72147
CGCTGTCACGCTTTCACGCTCACCACACTCACCACACCCAGCCGCTTGTCTGTCTTCGCGCTACC
TTCGTTCCACCGCAATTGCAACGCTCACACCCACACCCAACCACGTCTACAGCCACAACCACTGG
CCACAACCAACAGCCCCAAGCTCTCCCACTTCCAATCATAACTCGTGTATTAGCTACCTAGTAAC
CCCCTCTCAACGACAACACCACGTGGAGGTTCGATCCCGGCTGGATCCCGCACTCCGCCACCAGG
AGGTCGTCCTGGAGCTGGCTCCCCTGGTAGATGAGCCGCTGCTGCGACGGGTGGATCCCCTCCTT
CTCCTCCATCATCTCCTTGATGCGGATGATCTTGTCGGTGGGCTCCACGTCCACAGGGATGTTGC
GCCCGGTCAACGTCTTGACGTGCACTTGCATGGTGTGATGAATGTCGTTGATGCGCGTTTATTTC
GCACGTCTGGTAGTGGGCTGGGCGAGACCACACCACGGGAGAAGA
Found at i:71644 original size:17 final size:15
Alignment explanation
Indices: 71609--71647 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
71599 CGCAACCACG
*
71609 CTCGTCAGTCTCACG
1 CTCGTCAGTCTCACA
71624 CTCGTCAGTTCCTCACA
1 CTCGTCAG-T-CTCACA
71641 CTCGTCA
1 CTCGTCA
71648 CGCTGTCACG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 1 0.05
17 12 0.57
ACGTcount: A:0.15, C:0.41, G:0.15, T:0.28
Consensus pattern (15 bp):
CTCGTCAGTCTCACA
Left flanking sequence: Indices 71109 -- 71608
GGTGGGGGAGAGGATGGGATATAAGGGTGGGGAGAGGCTGTGGTGTGTTTATGTTGTTGGTGGGT
AGTGGGTGTGTGTGTGTATGGGTAGTGGTGGTGGTAGGGTTTGTATTTTTGGTGTTGCGTTCAGT
GTTTGGTGATGGTGCGTAGGTAGTGAGGAGACTGTAGGGTGGGAAAGAAGGTCAATTGGGTGGAA
GGGGCGAAGCAGTGTGGTGGTAGGTTTAGGGAGGGAAAGTCGGTGGGGTTTCCGGTGTCATTGTT
GCCTTAGTATCGTCTTTTGGTGTCTTCTACGGAATGCAATGCTATGTCACTCGCAAACAATACAC
ACTACAATGGACGTTCCTGAGCCAATGTGTAAGGTGAATGTGGAGCGTTAGCGTGTGACTTGGCC
ATACAACACCCAGCACCATCCTACGTTACTTGGCTCTCCAACGCGTAAGGAAGCTCGCCACAGCA
CAGACCCACCGGTAGTACGCAACCACGCGATAACACGCAACCACG
Right flanking sequence: Indices 71648 -- 72147
CGCTGTCACGCTTTCACGCTCACCACACTCACCACACCCAGCCGCTTGTCTGTCTTCGCGCTACC
TTCGTTCCACCGCAATTGCAACGCTCACACCCACACCCAACCACGTCTACAGCCACAACCACTGG
CCACAACCAACAGCCCCAAGCTCTCCCACTTCCAATCATAACTCGTGTATTAGCTACCTAGTAAC
CCCCTCTCAACGACAACACCACGTGGAGGTTCGATCCCGGCTGGATCCCGCACTCCGCCACCAGG
AGGTCGTCCTGGAGCTGGCTCCCCTGGTAGATGAGCCGCTGCTGCGACGGGTGGATCCCCTCCTT
CTCCTCCATCATCTCCTTGATGCGGATGATCTTGTCGGTGGGCTCCACGTCCACAGGGATGTTGC
GCCCGGTCAACGTCTTGACGTGCACTTGCATGGTGTGATGAATGTCGTTGATGCGCGTTTATTTC
GCACGTCTGGTAGTGGGCTGGGCGAGACCACACCACGGGAGAAGA
Found at i:72275 original size:10 final size:10
Alignment explanation
Indices: 72260--72300 Score: 82
Period size: 10 Copynumber: 4.1 Consensus size: 10
72250 ACCTACGTCC
72260 CACCCACCGT
1 CACCCACCGT
72270 CACCCACCGT
1 CACCCACCGT
72280 CACCCACCGT
1 CACCCACCGT
72290 CACCCACCGT
1 CACCCACCGT
72300 C
1 C
72301 GCCACCGCCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.20, C:0.61, G:0.10, T:0.10
Consensus pattern (10 bp):
CACCCACCGT
Left flanking sequence: Indices 71760 -- 72259
TACAGCCACAACCACTGGCCACAACCAACAGCCCCAAGCTCTCCCACTTCCAATCATAACTCGTG
TATTAGCTACCTAGTAACCCCCTCTCAACGACAACACCACGTGGAGGTTCGATCCCGGCTGGATC
CCGCACTCCGCCACCAGGAGGTCGTCCTGGAGCTGGCTCCCCTGGTAGATGAGCCGCTGCTGCGA
CGGGTGGATCCCCTCCTTCTCCTCCATCATCTCCTTGATGCGGATGATCTTGTCGGTGGGCTCCA
CGTCCACAGGGATGTTGCGCCCGGTCAACGTCTTGACGTGCACTTGCATGGTGTGATGAATGTCG
TTGATGCGCGTTTATTTCGCACGTCTGGTAGTGGGCTGGGCGAGACCACACCACGGGAGAAGACG
AAAGGGACTGCTACGAGCGGGTGTGGGCCCTGCTGAGTCCACCCCGCGCGTGCCCCGCTCCGTGC
CCGCTATCTACGTGTCGGCTACGCTATTTATAGCCACCTACGTCC
Right flanking sequence: Indices 72301 -- 72800
GCCACCGCCCACACCACCAAACCACGCCACCAAACACCACCAAACAACACCAAACACCACCAAAC
ACACCACCCACCCCACCGCACACCCCACCGCACACCCCACTTCTATTTTTATCTAGTCGTATACC
ATCCTTTGTAGACCCTTATCTCTGTGCGGCTTCGCACGATCAACTCGATCTCCACACCCGATGCT
CTCCACACCCGATGTCCGCAACCTCCACGAGCAGGTGTACGAGCCCGCGGAGGACCTGTTCTTGC
TCCTCGACTGCTTCGAGCAGGACCGGGCCGAGCTCATGGCGCGGTTTGCGTTCCCCGTGGTGTGC
GAGATCGGTGCCGGCTCGGGGGTGGTGCTGAGCTTTGTCGCCCAGCACTTGTACCCGAAGGGGTA
CACCGTAGCCACCGACATCAACCCCCACGCGTGCTCGCAGGTGGTGTCTACGTTTCGCGAAAACC
ACCTCCGCAACGGGGTGGAGATGATGCAGATGAGCCTTGGCGATG
Found at i:72325 original size:13 final size:13
Alignment explanation
Indices: 72309--72373 Score: 53
Period size: 13 Copynumber: 4.8 Consensus size: 13
72299 TCGCCACCGC
72309 CCACACCACCAAA
1 CCACACCACCAAA
*
72322 CCACGCCACCAAA
1 CCACACCACCAAA
*
72335 -CACCACCAAACAACA
1 CCA-CACC-ACCAA-A
72350 CCAAACACCACCAAA
1 CC--ACACCACCAAA
72365 -CACACCACC
1 CCACACCACC
72374 CACCCCACCG
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
12 10 0.24
13 15 0.36
14 5 0.12
15 2 0.05
16 5 0.12
17 4 0.10
18 1 0.02
ACGTcount: A:0.46, C:0.52, G:0.02, T:0.00
Consensus pattern (13 bp):
CCACACCACCAAA
Left flanking sequence: Indices 71809 -- 72308
CCAATCATAACTCGTGTATTAGCTACCTAGTAACCCCCTCTCAACGACAACACCACGTGGAGGTT
CGATCCCGGCTGGATCCCGCACTCCGCCACCAGGAGGTCGTCCTGGAGCTGGCTCCCCTGGTAGA
TGAGCCGCTGCTGCGACGGGTGGATCCCCTCCTTCTCCTCCATCATCTCCTTGATGCGGATGATC
TTGTCGGTGGGCTCCACGTCCACAGGGATGTTGCGCCCGGTCAACGTCTTGACGTGCACTTGCAT
GGTGTGATGAATGTCGTTGATGCGCGTTTATTTCGCACGTCTGGTAGTGGGCTGGGCGAGACCAC
ACCACGGGAGAAGACGAAAGGGACTGCTACGAGCGGGTGTGGGCCCTGCTGAGTCCACCCCGCGC
GTGCCCCGCTCCGTGCCCGCTATCTACGTGTCGGCTACGCTATTTATAGCCACCTACGTCCCACC
CACCGTCACCCACCGTCACCCACCGTCACCCACCGTCGCCACCGC
Right flanking sequence: Indices 72374 -- 72873
CACCCCACCGCACACCCCACCGCACACCCCACTTCTATTTTTATCTAGTCGTATACCATCCTTTG
TAGACCCTTATCTCTGTGCGGCTTCGCACGATCAACTCGATCTCCACACCCGATGCTCTCCACAC
CCGATGTCCGCAACCTCCACGAGCAGGTGTACGAGCCCGCGGAGGACCTGTTCTTGCTCCTCGAC
TGCTTCGAGCAGGACCGGGCCGAGCTCATGGCGCGGTTTGCGTTCCCCGTGGTGTGCGAGATCGG
TGCCGGCTCGGGGGTGGTGCTGAGCTTTGTCGCCCAGCACTTGTACCCGAAGGGGTACACCGTAG
CCACCGACATCAACCCCCACGCGTGCTCGCAGGTGGTGTCTACGTTTCGCGAAAACCACCTCCGC
AACGGGGTGGAGATGATGCAGATGAGCCTTGGCGATGGCCTCCGCCCGGGAGTGGTGGATCTACT
CGTGTTCAACCCGCCGTATGTGCCGGCCGAGGAGGTTCCGGCCCG
Found at i:72342 original size:10 final size:10
Alignment explanation
Indices: 72311--72371 Score: 79
Period size: 10 Copynumber: 5.9 Consensus size: 10
72301 GCCACCGCCC
72311 ACACCACCAA
1 ACACCACCAA
72321 ACCACGCCACCAA
1 A-CA--CCACCAA
72334 ACACCACCAA
1 ACACCACCAA
*
72344 ACAACACCAA
1 ACACCACCAA
72354 ACACCACCAA
1 ACACCACCAA
72364 ACA-CACCA
1 ACACCACCA
72372 CCCACCCCAC
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
9 5 0.11
10 29 0.63
11 2 0.04
12 2 0.04
13 8 0.17
ACGTcount: A:0.49, C:0.49, G:0.02, T:0.00
Consensus pattern (10 bp):
ACACCACCAA
Left flanking sequence: Indices 71811 -- 72310
AATCATAACTCGTGTATTAGCTACCTAGTAACCCCCTCTCAACGACAACACCACGTGGAGGTTCG
ATCCCGGCTGGATCCCGCACTCCGCCACCAGGAGGTCGTCCTGGAGCTGGCTCCCCTGGTAGATG
AGCCGCTGCTGCGACGGGTGGATCCCCTCCTTCTCCTCCATCATCTCCTTGATGCGGATGATCTT
GTCGGTGGGCTCCACGTCCACAGGGATGTTGCGCCCGGTCAACGTCTTGACGTGCACTTGCATGG
TGTGATGAATGTCGTTGATGCGCGTTTATTTCGCACGTCTGGTAGTGGGCTGGGCGAGACCACAC
CACGGGAGAAGACGAAAGGGACTGCTACGAGCGGGTGTGGGCCCTGCTGAGTCCACCCCGCGCGT
GCCCCGCTCCGTGCCCGCTATCTACGTGTCGGCTACGCTATTTATAGCCACCTACGTCCCACCCA
CCGTCACCCACCGTCACCCACCGTCACCCACCGTCGCCACCGCCC
Right flanking sequence: Indices 72372 -- 72871
CCCACCCCACCGCACACCCCACCGCACACCCCACTTCTATTTTTATCTAGTCGTATACCATCCTT
TGTAGACCCTTATCTCTGTGCGGCTTCGCACGATCAACTCGATCTCCACACCCGATGCTCTCCAC
ACCCGATGTCCGCAACCTCCACGAGCAGGTGTACGAGCCCGCGGAGGACCTGTTCTTGCTCCTCG
ACTGCTTCGAGCAGGACCGGGCCGAGCTCATGGCGCGGTTTGCGTTCCCCGTGGTGTGCGAGATC
GGTGCCGGCTCGGGGGTGGTGCTGAGCTTTGTCGCCCAGCACTTGTACCCGAAGGGGTACACCGT
AGCCACCGACATCAACCCCCACGCGTGCTCGCAGGTGGTGTCTACGTTTCGCGAAAACCACCTCC
GCAACGGGGTGGAGATGATGCAGATGAGCCTTGGCGATGGCCTCCGCCCGGGAGTGGTGGATCTA
CTCGTGTTCAACCCGCCGTATGTGCCGGCCGAGGAGGTTCCGGCC
Found at i:72382 original size:12 final size:12
Alignment explanation
Indices: 72374--72405 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
72364 ACACACCACC
72374 CACCCCACCGCA
1 CACCCCACCGCA
72386 CACCCCACCGCA
1 CACCCCACCGCA
72398 CACCCCAC
1 CACCCCAC
72406 TTCTATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.69, G:0.06, T:0.00
Consensus pattern (12 bp):
CACCCCACCGCA
Left flanking sequence: Indices 71874 -- 72373
CGATCCCGGCTGGATCCCGCACTCCGCCACCAGGAGGTCGTCCTGGAGCTGGCTCCCCTGGTAGA
TGAGCCGCTGCTGCGACGGGTGGATCCCCTCCTTCTCCTCCATCATCTCCTTGATGCGGATGATC
TTGTCGGTGGGCTCCACGTCCACAGGGATGTTGCGCCCGGTCAACGTCTTGACGTGCACTTGCAT
GGTGTGATGAATGTCGTTGATGCGCGTTTATTTCGCACGTCTGGTAGTGGGCTGGGCGAGACCAC
ACCACGGGAGAAGACGAAAGGGACTGCTACGAGCGGGTGTGGGCCCTGCTGAGTCCACCCCGCGC
GTGCCCCGCTCCGTGCCCGCTATCTACGTGTCGGCTACGCTATTTATAGCCACCTACGTCCCACC
CACCGTCACCCACCGTCACCCACCGTCACCCACCGTCGCCACCGCCCACACCACCAAACCACGCC
ACCAAACACCACCAAACAACACCAAACACCACCAAACACACCACC
Right flanking sequence: Indices 72406 -- 72905
TTCTATTTTTATCTAGTCGTATACCATCCTTTGTAGACCCTTATCTCTGTGCGGCTTCGCACGAT
CAACTCGATCTCCACACCCGATGCTCTCCACACCCGATGTCCGCAACCTCCACGAGCAGGTGTAC
GAGCCCGCGGAGGACCTGTTCTTGCTCCTCGACTGCTTCGAGCAGGACCGGGCCGAGCTCATGGC
GCGGTTTGCGTTCCCCGTGGTGTGCGAGATCGGTGCCGGCTCGGGGGTGGTGCTGAGCTTTGTCG
CCCAGCACTTGTACCCGAAGGGGTACACCGTAGCCACCGACATCAACCCCCACGCGTGCTCGCAG
GTGGTGTCTACGTTTCGCGAAAACCACCTCCGCAACGGGGTGGAGATGATGCAGATGAGCCTTGG
CGATGGCCTCCGCCCGGGAGTGGTGGATCTACTCGTGTTCAACCCGCCGTATGTGCCGGCCGAGG
AGGTTCCGGCCCGGCCCCAGGCAGACGACGACCCGGTGTGGCTTG
Found at i:72500 original size:16 final size:16
Alignment explanation
Indices: 72479--72509 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
72469 ATCAACTCGA
72479 TCTCCACACCCGATGC
1 TCTCCACACCCGATGC
72495 TCTCCACACCCGATG
1 TCTCCACACCCGATG
72510 TCCGCAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.48, G:0.13, T:0.19
Consensus pattern (16 bp):
TCTCCACACCCGATGC
Left flanking sequence: Indices 71979 -- 72478
CATCATCTCCTTGATGCGGATGATCTTGTCGGTGGGCTCCACGTCCACAGGGATGTTGCGCCCGG
TCAACGTCTTGACGTGCACTTGCATGGTGTGATGAATGTCGTTGATGCGCGTTTATTTCGCACGT
CTGGTAGTGGGCTGGGCGAGACCACACCACGGGAGAAGACGAAAGGGACTGCTACGAGCGGGTGT
GGGCCCTGCTGAGTCCACCCCGCGCGTGCCCCGCTCCGTGCCCGCTATCTACGTGTCGGCTACGC
TATTTATAGCCACCTACGTCCCACCCACCGTCACCCACCGTCACCCACCGTCACCCACCGTCGCC
ACCGCCCACACCACCAAACCACGCCACCAAACACCACCAAACAACACCAAACACCACCAAACACA
CCACCCACCCCACCGCACACCCCACCGCACACCCCACTTCTATTTTTATCTAGTCGTATACCATC
CTTTGTAGACCCTTATCTCTGTGCGGCTTCGCACGATCAACTCGA
Right flanking sequence: Indices 72510 -- 73009
TCCGCAACCTCCACGAGCAGGTGTACGAGCCCGCGGAGGACCTGTTCTTGCTCCTCGACTGCTTC
GAGCAGGACCGGGCCGAGCTCATGGCGCGGTTTGCGTTCCCCGTGGTGTGCGAGATCGGTGCCGG
CTCGGGGGTGGTGCTGAGCTTTGTCGCCCAGCACTTGTACCCGAAGGGGTACACCGTAGCCACCG
ACATCAACCCCCACGCGTGCTCGCAGGTGGTGTCTACGTTTCGCGAAAACCACCTCCGCAACGGG
GTGGAGATGATGCAGATGAGCCTTGGCGATGGCCTCCGCCCGGGAGTGGTGGATCTACTCGTGTT
CAACCCGCCGTATGTGCCGGCCGAGGAGGTTCCGGCCCGGCCCCAGGCAGACGACGACCCGGTGT
GGCTTGATCTCGCGTTGCTCGGGGGCGCAGACGGCATGGAGACGACGTGGCAGGTGCTCGACAAC
TTGGACACCCTCCTCTCTCGCGATGGCATCGCCTACATCTTGTTC
Found at i:74538 original size:18 final size:18
Alignment explanation
Indices: 74502--74541 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
74492 ACAAACACTC
*
74502 GCACAAGCACGACCACAA
1 GCACAAGCACAACCACAA
74520 GCACAAGCACAAACC-CAA
1 GCACAAGCAC-AACCACAA
74538 GCAC
1 GCAC
74542 GCCTCCTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.45, C:0.40, G:0.15, T:0.00
Consensus pattern (18 bp):
GCACAAGCACAACCACAA
Left flanking sequence: Indices 74002 -- 74501
TGATCCCGTTGGTAGTGCTATATAAGGTTTGAGGCAGACTAACAATGGCTAAGGAACTGGCAACG
CCTTGGCGTGGGCGCCAATCGTCCGTCAGTCTCCACAGTAGCCCCTACAGTAGCCCCCACGGTGT
TCACCTTGTCCACCTGTGGCGTTGGAATAGTTTTCGTTGGGCCTGGTTCCCGTGTAGATAAACCT
CTCAAATTTGTTGCGGCTGCGAACATGGCTGGGGACAAGAGGAAGCGGAAGAGATCCAAGAAGAA
GGGCCACCACGAGGTGGCCGCGGCAGACGAGCCCGTGTACGAGCCCCAGAACACCGTCAACACCA
AGATCCGCTTCGATGAGACCCCACAGCCCGCTGGCGAGCCCGCTGAGCCGCGCGATGAGGAGGCC
ATCGCTGGCGAGGACGTCCCCCAGGAGCCGGTGGAGGCCCAGGAACCCACAGAGAACGCTCCTGA
GGACGCATTGGAGCCCCTGGAAGCCCCCAAGCACCACAAACACTC
Right flanking sequence: Indices 74542 -- 75041
GCCTCCTTCTACGACCACGACGACGACGAGGACGACGACTTTGGCGGCGACCGCGGCCACAAGAG
TCGCCACGAGTTGGCTGCCACCGCCGCCAAGCTCTTGGAAGTGCGCAAAACCCTTCCCATCTACC
GCCATCGCCAGGCGATCCTCGACCAGATCAACGCGCACCAGGTGACGGTGGTGATTGGTGAGACC
GGTTCCGGTAAGTCGACCCAGATCCCGCAGTTCTTGTTGGAGCAGGGTCTGGAGAAGCTTGTGGG
GTGTACCCAGCCCCGTCGAGTGGCCGCAGCCTCGTTGGCGGCCCGTGTGGCCCAGGAGTATGGCA
CCCGCTTGGGGGACGCCGTGGGTTACCAGGTGCGGTTCTCCAACATCACCAGCCACAAGACCAAG
CTCAAGTACCTCACAGACGGTATGTTGCTTCGAGAGATCATGTTGGACGGCACTCTCCAGCGGTA
CCTGTCGATCATCATCGACGAGGCCCACGAGAGAACCGTGCTCAC
Found at i:79659 original size:11 final size:11
Alignment explanation
Indices: 79621--79651 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
79611 TCGTTACACT
79621 GCACCTGCGCG
1 GCACCTGCGCG
79632 GCACCTGCGCG
1 GCACCTGCGCG
79643 GCACCTGCG
1 GCACCTGCG
79652 ATGCACCTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.10, C:0.45, G:0.35, T:0.10
Consensus pattern (11 bp):
GCACCTGCGCG
Left flanking sequence: Indices 79121 -- 79620
GCAAGTCGGCTACGGCCTCGATCCGCAGTCTCATGTCGCTGAGCACTGTTTCGCGAGTGGCTACC
CGTTTGATACTGATGCCCTCATCGTCCAAACCGCCGTAGATGCTGGCTCGCAGGTACTGGCGCGG
CTGGGCCTCCTCATCGGTGGATACGTTGTACGCCTGCACGGTGCCGTCAGAGCTGTCGTGGGACA
GGTACTTATCCAGGTCCCGTGTCATGATCTGTGCTTAAATGAAATTTCGGACTTGTTTTGCGGTT
CTCCGTTACCTTTATATACTACAGCAAACGGGGTTAATGCTATGTCCGCATCATCTTGCCGATGA
GTCAGCGCCGGTGGTGTGGGGGAAGGAAGGGCGCTACGGACGGGAAAAACGGTGGACCGGGTACT
AGGGGCAGCAAAGAGGAAGCCTAGCTGGTAAAAAGTGCACCAACAGGCGCCCAATTGGCCCTAGC
CCGCCCGTCGGCTTGAACCCGTTCCGGTATGTGTGTCGTTACACT
Right flanking sequence: Indices 79652 -- 80151
ATGCACCTCCTTAACGGGGACGAAAGAGATTGCTTACTAATGGTCGGGCGAGTTCACCCCCGCCA
GAGGGGCAGCGAAGGACCAGCAATCCGCGCTATACCCGCGCAGCAACTCCAGGCGACCCCGTCAA
CACCCGCTGCTTCTCTTGCACCCACCGTAGCCGCACTAGTGTCATCCGGAAAATCGCGCTGTTCT
CCGAGAGGCGCCACAGTGCGCATGGCACCACTGCACTCACGCCGTTCGTGGTGGCTGAGACATTG
ACTGCATGGGTTCTTGGCACGGTGTCGTGCTATATTTGACCGCTGTCGGCACCGGACCTCTTGGG
CCGGTTTACGGCCGCTGCCCGTGGGATGTCGGCACGGTGGTGACTCTCGCCGGTGCACAGGTGGT
GCACCTACAGTGCACATTCCCCGCTTCAATGTCGTGTCGATCCTCGGGCCGAAGCCGACAACGGT
GGACGAGCCGTAGCTGCGTACACAAACGCATTGTGTGGGTGCGGA
Found at i:80458 original size:17 final size:17
Alignment explanation
Indices: 80436--80472 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
80426 TGTGTAAAGG
80436 AAGAGGTGTAGGGTGTA
1 AAGAGGTGTAGGGTGTA
80453 AAGAGGTGTAGGGTGTA
1 AAGAGGTGTAGGGTGTA
80470 AAG
1 AAG
80473 GAAAGAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.46, T:0.22
Consensus pattern (17 bp):
AAGAGGTGTAGGGTGTA
Left flanking sequence: Indices 79936 -- 80435
TCGTGCTATATTTGACCGCTGTCGGCACCGGACCTCTTGGGCCGGTTTACGGCCGCTGCCCGTGG
GATGTCGGCACGGTGGTGACTCTCGCCGGTGCACAGGTGGTGCACCTACAGTGCACATTCCCCGC
TTCAATGTCGTGTCGATCCTCGGGCCGAAGCCGACAACGGTGGACGAGCCGTAGCTGCGTACACA
AACGCATTGTGTGGGTGCGGACAAAGGACACACGGGTGATTACAATCGACTGATGACAAATAGCA
AACGGTGCGGGATCGGGCCAACGGGTGGGCTTACGAGAGGACCGGGGGCTCGGGGATAGGAGCGG
GTGGGGATCGGTGAACTGGCCGACCCCTCAGTGTTTCTTTTGTGGCCCGGGTGGATGCGAAGGGT
GGAGGAGAGACGAGCGGCTGTAGACGTGGGTGAGGTGGGCGGTAGTGCGGACGAACGGGCCGGAC
CGGTGCAGTGAAGGGGTGTCAGGGAAGAGTCATAATGTGTAAAGG
Right flanking sequence: Indices 80473 -- 80972
GAAAGAGTCAATATGTGGACGAGTAGTGCTAAGCAAATTTGGTTGTTTATGTGGAGCAATGAGTG
ACCGGTGGTGGCCTAGACTCTACCCAGGTACACGCTACACGCTATTGCCAACCACCACTGGGGTG
TCTTACATTTCTTTTGGCAGCTTATCACGCTACTGCTCGCCTATAACGCCACTAGCAACCACGGG
AGAGACTCGTCCACGGTCAGACGGTAGATCGGAAGTGCGTAATACCACCAGTTTAGACGTGGGGG
TTGAAGGTTTTAACAATGCGATGCGCTCTCAAATTAGCGATGACGTAGATCATCTACACTGCTTA
GAGCAAGCGTCAACGGACCTAGCCACCGGTCCCAGCCGCGAGCTGCTGGATGACGTGTGCCAAGC
TATCGGTCCACACGGCTGAGTTTCTTTTGAGGGGGAAAGTGGCTAGTGGAAACAGTGGGTGGCGA
GACCGGAGATGATGGTATTGGCCAGTTCGGACAAGTCCTTGTGGT
Found at i:85019 original size:11 final size:11
Alignment explanation
Indices: 85005--85059 Score: 76
Period size: 11 Copynumber: 5.1 Consensus size: 11
84995 GACGGTAGAA
*
85005 GCGATGTAGGG
1 GCGAGGTAGGG
* *
85016 GCGAGTTAGGC
1 GCGAGGTAGGG
85027 GCGAGGTAGGG
1 GCGAGGTAGGG
85038 GCGAGGTA-GG
1 GCGAGGTAGGG
85048 GCGAGGTAGGG
1 GCGAGGTAGGG
85059 G
1 G
85060 GCTCGGTGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
10 10 0.26
11 28 0.74
ACGTcount: A:0.18, C:0.11, G:0.58, T:0.13
Consensus pattern (11 bp):
GCGAGGTAGGG
Left flanking sequence: Indices 84505 -- 85004
ACTTGGCGCGACATGGTATGACAATCAACAGGCGGGTGCGCACTACGGAGTCTGTGCGCCTGGGG
GTCGGGTTCGGGCGTGGCAAGGGGTAGGCTCCGGTGACAGTGTTGCCCAACTTGCTTTTTTTTCG
ACTCGGGCGTGTGCAGGTCGGGAGTGGCGGTTCGGTGGAGGACGGCGGGGGTGGGCAGCGGCGGT
AGCGGGCTGGGGATGGTGGCAGCGGGTAGCGTGGGTGCTGGCGGTGCTGGCGGTGTGCTTGGTTT
TGGCGTGGGGCTCGTGGTGGGCGAGATCTACGGGGGTATATGTCGCCCCTATTATCAGATTATCA
AGGTGTGACTAAGAGGCTGAGACGGTGAGACTTAGTCAGATATGAACAACGGGGTCTATGGGGGT
AGTGGCGGCGACTACGGCCGTGTCGTCTGCCGGCACTGCCTGCCGTGGGCTAAATCACGCAAACT
GCGCATGCGGTGGTTCCGGAGGCGGGCCGTGCAGTGACGGTAGAA
Right flanking sequence: Indices 85060 -- 85559
GCTCGGTGTTGCTACGGATGGGGTAGGGATGGGTAGTGTTGTGTTGTGGGGTGGTTGTGGTGTGG
TTGTGGTTCTACTAGTTTTATTCTTGTTTTACTCTTGTTTTATTCTAGTTTTTATTCTTTTTATT
CTTGTTCGTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTCAAGCCTTTCTCGCGTAGA
CGGCGATAGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGGCCGGTGTGGTCCCGTGCA
GCTAAGAATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGGGCGTCTGATTGGCTGGCG
ACCGGCCCGGGATGTGGAGCCGAGCGTTTCTTGGTTTTTGGTATCTTAGTTCTTGGTTTCTTGGT
CCTTAGCAATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGGA
ATGTGTCAACGATCCTCGTCAACGAGACAAAATAGAACAATCGTG
Found at i:85051 original size:10 final size:10
Alignment explanation
Indices: 85014--85058 Score: 63
Period size: 10 Copynumber: 4.3 Consensus size: 10
85004 AGCGATGTAG
*
85014 GGGCGAGTTA
1 GGGCGAGGTA
85024 GGCGCGAGGTA
1 GG-GCGAGGTA
85035 GGGGCGAGGTA
1 -GGGCGAGGTA
85046 GGGCGAGGTA
1 GGGCGAGGTA
85056 GGG
1 GGG
85059 GGCTCGGTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 15 0.47
11 15 0.47
12 2 0.06
ACGTcount: A:0.18, C:0.11, G:0.60, T:0.11
Consensus pattern (10 bp):
GGGCGAGGTA
Left flanking sequence: Indices 84514 -- 85013
GACATGGTATGACAATCAACAGGCGGGTGCGCACTACGGAGTCTGTGCGCCTGGGGGTCGGGTTC
GGGCGTGGCAAGGGGTAGGCTCCGGTGACAGTGTTGCCCAACTTGCTTTTTTTTCGACTCGGGCG
TGTGCAGGTCGGGAGTGGCGGTTCGGTGGAGGACGGCGGGGGTGGGCAGCGGCGGTAGCGGGCTG
GGGATGGTGGCAGCGGGTAGCGTGGGTGCTGGCGGTGCTGGCGGTGTGCTTGGTTTTGGCGTGGG
GCTCGTGGTGGGCGAGATCTACGGGGGTATATGTCGCCCCTATTATCAGATTATCAAGGTGTGAC
TAAGAGGCTGAGACGGTGAGACTTAGTCAGATATGAACAACGGGGTCTATGGGGGTAGTGGCGGC
GACTACGGCCGTGTCGTCTGCCGGCACTGCCTGCCGTGGGCTAAATCACGCAAACTGCGCATGCG
GTGGTTCCGGAGGCGGGCCGTGCAGTGACGGTAGAAGCGATGTAG
Right flanking sequence: Indices 85059 -- 85558
GGCTCGGTGTTGCTACGGATGGGGTAGGGATGGGTAGTGTTGTGTTGTGGGGTGGTTGTGGTGTG
GTTGTGGTTCTACTAGTTTTATTCTTGTTTTACTCTTGTTTTATTCTAGTTTTTATTCTTTTTAT
TCTTGTTCGTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTCAAGCCTTTCTCGCGTAG
ACGGCGATAGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGGCCGGTGTGGTCCCGTGC
AGCTAAGAATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGGGCGTCTGATTGGCTGGC
GACCGGCCCGGGATGTGGAGCCGAGCGTTTCTTGGTTTTTGGTATCTTAGTTCTTGGTTTCTTGG
TCCTTAGCAATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGG
AATGTGTCAACGATCCTCGTCAACGAGACAAAATAGAACAATCGT
Found at i:85061 original size:22 final size:22
Alignment explanation
Indices: 85005--85059 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
84995 GACGGTAGAA
* *
85005 GCGATGTAGGGGCGAGTTAGGC
1 GCGAGGTAGGGGCGAGGTAGGC
85027 GCGAGGTAGGGGCGAGGTAGG-
1 GCGAGGTAGGGGCGAGGTAGGC
85048 GCGAGGTAGGGG
1 GCGAGGTAGGGG
85060 GCTCGGTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 12 0.39
22 19 0.61
ACGTcount: A:0.18, C:0.11, G:0.58, T:0.13
Consensus pattern (22 bp):
GCGAGGTAGGGGCGAGGTAGGC
Left flanking sequence: Indices 84505 -- 85004
ACTTGGCGCGACATGGTATGACAATCAACAGGCGGGTGCGCACTACGGAGTCTGTGCGCCTGGGG
GTCGGGTTCGGGCGTGGCAAGGGGTAGGCTCCGGTGACAGTGTTGCCCAACTTGCTTTTTTTTCG
ACTCGGGCGTGTGCAGGTCGGGAGTGGCGGTTCGGTGGAGGACGGCGGGGGTGGGCAGCGGCGGT
AGCGGGCTGGGGATGGTGGCAGCGGGTAGCGTGGGTGCTGGCGGTGCTGGCGGTGTGCTTGGTTT
TGGCGTGGGGCTCGTGGTGGGCGAGATCTACGGGGGTATATGTCGCCCCTATTATCAGATTATCA
AGGTGTGACTAAGAGGCTGAGACGGTGAGACTTAGTCAGATATGAACAACGGGGTCTATGGGGGT
AGTGGCGGCGACTACGGCCGTGTCGTCTGCCGGCACTGCCTGCCGTGGGCTAAATCACGCAAACT
GCGCATGCGGTGGTTCCGGAGGCGGGCCGTGCAGTGACGGTAGAA
Right flanking sequence: Indices 85060 -- 85559
GCTCGGTGTTGCTACGGATGGGGTAGGGATGGGTAGTGTTGTGTTGTGGGGTGGTTGTGGTGTGG
TTGTGGTTCTACTAGTTTTATTCTTGTTTTACTCTTGTTTTATTCTAGTTTTTATTCTTTTTATT
CTTGTTCGTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTCAAGCCTTTCTCGCGTAGA
CGGCGATAGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGGCCGGTGTGGTCCCGTGCA
GCTAAGAATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGGGCGTCTGATTGGCTGGCG
ACCGGCCCGGGATGTGGAGCCGAGCGTTTCTTGGTTTTTGGTATCTTAGTTCTTGGTTTCTTGGT
CCTTAGCAATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGGA
ATGTGTCAACGATCCTCGTCAACGAGACAAAATAGAACAATCGTG
Found at i:85131 original size:11 final size:11
Alignment explanation
Indices: 85102--85131 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
85092 GTAGTGTTGT
*
85102 GTTGTGGGGTG
1 GTTGTGGTGTG
85113 GTTGTGGTGTG
1 GTTGTGGTGTG
85124 GTTGTGGT
1 GTTGTGGT
85132 TCTACTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.57, T:0.43
Consensus pattern (11 bp):
GTTGTGGTGTG
Left flanking sequence: Indices 84602 -- 85101
GGTGACAGTGTTGCCCAACTTGCTTTTTTTTCGACTCGGGCGTGTGCAGGTCGGGAGTGGCGGTT
CGGTGGAGGACGGCGGGGGTGGGCAGCGGCGGTAGCGGGCTGGGGATGGTGGCAGCGGGTAGCGT
GGGTGCTGGCGGTGCTGGCGGTGTGCTTGGTTTTGGCGTGGGGCTCGTGGTGGGCGAGATCTACG
GGGGTATATGTCGCCCCTATTATCAGATTATCAAGGTGTGACTAAGAGGCTGAGACGGTGAGACT
TAGTCAGATATGAACAACGGGGTCTATGGGGGTAGTGGCGGCGACTACGGCCGTGTCGTCTGCCG
GCACTGCCTGCCGTGGGCTAAATCACGCAAACTGCGCATGCGGTGGTTCCGGAGGCGGGCCGTGC
AGTGACGGTAGAAGCGATGTAGGGGCGAGTTAGGCGCGAGGTAGGGGCGAGGTAGGGCGAGGTAG
GGGGCTCGGTGTTGCTACGGATGGGGTAGGGATGGGTAGTGTTGT
Right flanking sequence: Indices 85132 -- 85631
TCTACTAGTTTTATTCTTGTTTTACTCTTGTTTTATTCTAGTTTTTATTCTTTTTATTCTTGTTC
GTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTCAAGCCTTTCTCGCGTAGACGGCGAT
AGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGGCCGGTGTGGTCCCGTGCAGCTAAGA
ATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGGGCGTCTGATTGGCTGGCGACCGGCC
CGGGATGTGGAGCCGAGCGTTTCTTGGTTTTTGGTATCTTAGTTCTTGGTTTCTTGGTCCTTAGC
AATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGGAATGTGTC
AACGATCCTCGTCAACGAGACAAAATAGAACAATCGTGCCGAAAAAGAAAACACGGATCTGCAAG
ATCTGGCCAACCGCAGGCACGTTGAGGCCCGATGGGTGGCTTTGA
Found at i:85155 original size:11 final size:11
Alignment explanation
Indices: 85139--85195 Score: 73
Period size: 11 Copynumber: 5.3 Consensus size: 11
85129 GGTTCTACTA
85139 GTTTTATTCTT
1 GTTTTATTCTT
*
85150 GTTTTACTCTT
1 GTTTTATTCTT
*
85161 GTTTTATTCTA
1 GTTTTATTCTT
85172 GTTTTTATTC-T
1 G-TTTTATTCTT
85183 -TTTTATTCTT
1 GTTTTATTCTT
85193 GTT
1 GTT
85196 CGTTCTTCGT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.21
10 1 0.03
11 22 0.56
12 8 0.21
ACGTcount: A:0.11, C:0.11, G:0.09, T:0.70
Consensus pattern (11 bp):
GTTTTATTCTT
Left flanking sequence: Indices 84639 -- 85138
GGGCGTGTGCAGGTCGGGAGTGGCGGTTCGGTGGAGGACGGCGGGGGTGGGCAGCGGCGGTAGCG
GGCTGGGGATGGTGGCAGCGGGTAGCGTGGGTGCTGGCGGTGCTGGCGGTGTGCTTGGTTTTGGC
GTGGGGCTCGTGGTGGGCGAGATCTACGGGGGTATATGTCGCCCCTATTATCAGATTATCAAGGT
GTGACTAAGAGGCTGAGACGGTGAGACTTAGTCAGATATGAACAACGGGGTCTATGGGGGTAGTG
GCGGCGACTACGGCCGTGTCGTCTGCCGGCACTGCCTGCCGTGGGCTAAATCACGCAAACTGCGC
ATGCGGTGGTTCCGGAGGCGGGCCGTGCAGTGACGGTAGAAGCGATGTAGGGGCGAGTTAGGCGC
GAGGTAGGGGCGAGGTAGGGCGAGGTAGGGGGCTCGGTGTTGCTACGGATGGGGTAGGGATGGGT
AGTGTTGTGTTGTGGGGTGGTTGTGGTGTGGTTGTGGTTCTACTA
Right flanking sequence: Indices 85196 -- 85695
CGTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTCAAGCCTTTCTCGCGTAGACGGCGA
TAGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGGCCGGTGTGGTCCCGTGCAGCTAAG
AATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGGGCGTCTGATTGGCTGGCGACCGGC
CCGGGATGTGGAGCCGAGCGTTTCTTGGTTTTTGGTATCTTAGTTCTTGGTTTCTTGGTCCTTAG
CAATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGGAATGTGT
CAACGATCCTCGTCAACGAGACAAAATAGAACAATCGTGCCGAAAAAGAAAACACGGATCTGCAA
GATCTGGCCAACCGCAGGCACGTTGAGGCCCGATGGGTGGCTTTGAACGGGGTACGCCGGACCGT
GGCTAGGTGTGACCCGTCGTGGTGTTTTCTGGTGGTGTTCGATGC
Found at i:85454 original size:22 final size:22
Alignment explanation
Indices: 85412--85455 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
85402 AGCCGAGCGT
*
85412 TTCTTGGTTTTTGGTATCTTAG
1 TTCTTGGTTTTTGGTACCTTAG
85434 TTCTTGGTTTCTTGGT-CCTTAG
1 TTCTTGGTTT-TTGGTACCTTAG
85456 CAATCCCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.07, C:0.14, G:0.23, T:0.57
Consensus pattern (22 bp):
TTCTTGGTTTTTGGTACCTTAG
Left flanking sequence: Indices 84912 -- 85411
CCGTGTCGTCTGCCGGCACTGCCTGCCGTGGGCTAAATCACGCAAACTGCGCATGCGGTGGTTCC
GGAGGCGGGCCGTGCAGTGACGGTAGAAGCGATGTAGGGGCGAGTTAGGCGCGAGGTAGGGGCGA
GGTAGGGCGAGGTAGGGGGCTCGGTGTTGCTACGGATGGGGTAGGGATGGGTAGTGTTGTGTTGT
GGGGTGGTTGTGGTGTGGTTGTGGTTCTACTAGTTTTATTCTTGTTTTACTCTTGTTTTATTCTA
GTTTTTATTCTTTTTATTCTTGTTCGTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTC
AAGCCTTTCTCGCGTAGACGGCGATAGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGG
CCGGTGTGGTCCCGTGCAGCTAAGAATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGG
GCGTCTGATTGGCTGGCGACCGGCCCGGGATGTGGAGCCGAGCGT
Right flanking sequence: Indices 85456 -- 85955
CAATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGGAATGTGT
CAACGATCCTCGTCAACGAGACAAAATAGAACAATCGTGCCGAAAAAGAAAACACGGATCTGCAA
GATCTGGCCAACCGCAGGCACGTTGAGGCCCGATGGGTGGCTTTGAACGGGGTACGCCGGACCGT
GGCTAGGTGTGACCCGTCGTGGTGTTTTCTGGTGGTGTTCGATGCACAACTCGCAGCAACGTGCC
CCTGTCTGACAACGGGTTTACGGGGCCCGTTGTTGCGATTGTGGGGAAAGCGGGGAGCCTACGGA
GGGCGATGGTGTAATGGTGCGTGCCCCCACGCTCCCCCACGGGAGGACCAGTAGAGTGCAGCGAG
AGGAGGGTCAAAGCCCGACGGCCTAAGCCCCAGTGATTCGGAGTCATTGGTGAGCACACGACAGG
CGGGTCAGACGTGGTGTGAGCCAGCACACGCGGGTCTGGCACCAT
Found at i:86262 original size:24 final size:25
Alignment explanation
Indices: 86215--86263 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
86205 CAGCGGAATG
**
86215 AGGTATGAACCACACGTATGCAACC
1 AGGTATGAACCACACGTACACAACC
*
86240 AGGTATG-AGCACACGTACACAACC
1 AGGTATGAACCACACGTACACAACC
86264 CGGTGGAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.37, C:0.29, G:0.20, T:0.14
Consensus pattern (25 bp):
AGGTATGAACCACACGTACACAACC
Left flanking sequence: Indices 85715 -- 86214
CCCTGTCTGACAACGGGTTTACGGGGCCCGTTGTTGCGATTGTGGGGAAAGCGGGGAGCCTACGG
AGGGCGATGGTGTAATGGTGCGTGCCCCCACGCTCCCCCACGGGAGGACCAGTAGAGTGCAGCGA
GAGGAGGGTCAAAGCCCGACGGCCTAAGCCCCAGTGATTCGGAGTCATTGGTGAGCACACGACAG
GCGGGTCAGACGTGGTGTGAGCCAGCACACGCGGGTCTGGCACCATTGGTAGTGGCGTGTGAGCC
AGCACACGAAAGGCGGGTCAGGCATCACCTGGGGAATACATAGGTTGTAGGTAGCTCAAACTGAC
GCAACTTCGGTGTCAATTGTTTGATGCTGAAAGTAAATTAAGGCATATGAGTACATTACTAGGAT
TATTTAACACGACTATCCATTCACAGACATGTGAGCGATTGATATAAGTATCAACTGAGTTCAGA
TTCATCCATCAATTCGACCAACGTATTACCTGGAACAGCGGAATG
Right flanking sequence: Indices 86264 -- 86763
CGGTGGAAATCTAGTAATCCAGCCAACTCACAACAATTGTCCAACAACAGTTGTCTAACCTTAGA
ATTACAGCAACCACGCACAATCAACTGAACGCTGGCTTCTTCACCATTCGCAACAGCTCAAAGCG
TAAATCACCCTGACGTTGAAGGAATCTGTTAGATACTTAGACAGCACACCCAATTTACTGGTGTC
CATTTCAAACGTTCAATCACTCACCATTCCTCTAAGACCTTCACACCTGTCCTCACACAACCTAC
CACATACCATACAACAGACCACACAGTCTAACAAAGAATCCACCACACGATACCCCCACCCATTA
CTTTCTCATGCTATTGATATCTACCTTATAAGCCAGTTATAGTGTTACAGTCCGCCCGTTAAATG
CATTTCACCGCACTCAATGCGGCAGTCCCCCAGTCCAAGTGCTCGGACGGAGCCGTCAGAATCAG
CTCGGTGTCGCTAAACACCCGCAGCGTCGGCAGGCCAAACACCAG
Found at i:96486 original size:14 final size:14
Alignment explanation
Indices: 96469--96498 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
96459 ATGCGGCAGC
96469 GGGTGCGCGTGCTG
1 GGGTGCGCGTGCTG
96483 GGGTGCGCGTGCTG
1 GGGTGCGCGTGCTG
96497 GG
1 GG
96499 TGTGACGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.20, G:0.60, T:0.20
Consensus pattern (14 bp):
GGGTGCGCGTGCTG
Left flanking sequence: Indices 95969 -- 96468
CCGCCCGGGCCCGGCTATTTCCACGCGCGCTGAAAATGTCGGCTGGAACCCGGCACTAACGGCGT
TCCACCATGCAGATAAGACGAGGGGAGTGGGGAAGCTTCGCGGGCGAACAGGGGTAGAGGCACCA
CACGAGGCGTTTTGGGAACCCTGGGTGCGCAGTAGTGGGTCGGGGTGGCCAACAATGGGGTGTGG
CCCGACCCGGCGATGAGCTCGGGTAAGGGTTCGTGACGGAGATGGTCACGGCGACGTAGCCGTGT
AACCGACGAGAGATGACTAGCAAGGATGACGGTGACAGCGTTGCTGTGTACGGGTAGAGTGCGTA
GAGTGAGTAGAGCGAAAGATGGTGGTGACCACACGTGGCGGGCGTGGGTGTCCCGGGACGGTTAC
CCCTCGAGTGACTCGGGAATTTTCTTGGACGCCTCGTGGAATTTGGTGGTATGGGGCGAGTGGAC
GAGGCGAGTTTAGTGGAGATGCGTGGGATGGGGGTATGCGGCAGC
Right flanking sequence: Indices 96499 -- 96998
TGTGACGGTTTGGCGGTGGACCGCTTCTGTGCGGGCTAGTTGCCGCTAGCGTAACCTTAATTCGG
TAAGTGCGTGTTTTACCGAGCCGACCGTTGAATGTGGCATGAGAGGAACGGAGAGGGGTGGTTAG
ACGGTGGTTACGTGTTTATGGGTGATTAGAGTGTGGTTTTTAGGTGTGCTAGTTTTCTACGGTGA
CATTTTGGTGACGGATACGGGTGACCTCGTGTGTTATTGTTTATGCCCGTTTGGGTAGTGTAATG
AACGTTATCGGTAGGTTAATGTACGGCAAAGGGTGGAAGAGGGGTGGAGAAACTGGAGAGAAAAG
GAGGTGGTGAGAAAGTGGAGGAGGTGGTGGGAAGGCGGTGGGAGGGCGGTGAGACGGTGGTGGGA
AGGTGGTGGAAAGAGTTTACGGGGTTCCCCGGGGGCTTAGGCGTCGTGATGGAAATATTAGCCGA
CACAAAGGCGATGGTTGCTAAATGAGTGGCCATGGTGATTAGACG
Found at i:96865 original size:11 final size:11
Alignment explanation
Indices: 96849--96897 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
96839 TGGAGGAGGT
96849 GGTGGGAAGGC
1 GGTGGGAAGGC
*
96860 GGTGGGAGGGC
1 GGTGGGAAGGC
* * *
96871 GGTGAGACGGT
1 GGTGGGAAGGC
*
96882 GGTGGGAAGGT
1 GGTGGGAAGGC
96893 GGTGG
1 GGTGG
96898 AAAGAGTTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.14, C:0.06, G:0.65, T:0.14
Consensus pattern (11 bp):
GGTGGGAAGGC
Left flanking sequence: Indices 96349 -- 96848
GGACGGTTACCCCTCGAGTGACTCGGGAATTTTCTTGGACGCCTCGTGGAATTTGGTGGTATGGG
GCGAGTGGACGAGGCGAGTTTAGTGGAGATGCGTGGGATGGGGGTATGCGGCAGCGGGTGCGCGT
GCTGGGGTGCGCGTGCTGGGTGTGACGGTTTGGCGGTGGACCGCTTCTGTGCGGGCTAGTTGCCG
CTAGCGTAACCTTAATTCGGTAAGTGCGTGTTTTACCGAGCCGACCGTTGAATGTGGCATGAGAG
GAACGGAGAGGGGTGGTTAGACGGTGGTTACGTGTTTATGGGTGATTAGAGTGTGGTTTTTAGGT
GTGCTAGTTTTCTACGGTGACATTTTGGTGACGGATACGGGTGACCTCGTGTGTTATTGTTTATG
CCCGTTTGGGTAGTGTAATGAACGTTATCGGTAGGTTAATGTACGGCAAAGGGTGGAAGAGGGGT
GGAGAAACTGGAGAGAAAAGGAGGTGGTGAGAAAGTGGAGGAGGT
Right flanking sequence: Indices 96898 -- 97397
AAAGAGTTTACGGGGTTCCCCGGGGGCTTAGGCGTCGTGATGGAAATATTAGCCGACACAAAGGC
GATGGTTGCTAAATGAGTGGCCATGGTGATTAGACGATGCTTGGCACACGTTGCTGAGTGACGTT
CAAACATCGTGATTTAAGCCAATGTTTCTTAGCATAGTACAAAATATTTGTTAAAAATTTGGAAA
GAATGTGGAAACGGACGGATTTAACCAACCACTCGTACCGGGTTCGAACCGAAGAAACCAGGTCC
ATTGGCGTAGCACGTAACTAGCGTAGTCAAGCATTTGACAGAATCTACACATCTCGAGCGATTCA
AGCCTGGTGTACAAGAGGGGTTAAGATATCCCCGCGTTCATGGCTAGCGACAGTAATAGCCCCAT
GGGCAACGTGTGTCTAGAAGTCAACAAGCATAAACAGACTGTCAAGCTTGGCTGGCTTACCAGTA
TCCACCTGCCTCCAACCATATAGCCTACCACAACCACATCAAAAT
Found at i:96896 original size:22 final size:22
Alignment explanation
Indices: 96845--96896 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
96835 AAAGTGGAGG
*
96845 AGGTGGTGGGAAGGCGGTGGGA
1 AGGTGGTGAGAAGGCGGTGGGA
* * * *
96867 GGGCGGTGAGACGGTGGTGGGA
1 AGGTGGTGAGAAGGCGGTGGGA
96889 AGGTGGTG
1 AGGTGGTG
96897 GAAAGAGTTT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.06, G:0.63, T:0.15
Consensus pattern (22 bp):
AGGTGGTGAGAAGGCGGTGGGA
Left flanking sequence: Indices 96345 -- 96844
CCCGGGACGGTTACCCCTCGAGTGACTCGGGAATTTTCTTGGACGCCTCGTGGAATTTGGTGGTA
TGGGGCGAGTGGACGAGGCGAGTTTAGTGGAGATGCGTGGGATGGGGGTATGCGGCAGCGGGTGC
GCGTGCTGGGGTGCGCGTGCTGGGTGTGACGGTTTGGCGGTGGACCGCTTCTGTGCGGGCTAGTT
GCCGCTAGCGTAACCTTAATTCGGTAAGTGCGTGTTTTACCGAGCCGACCGTTGAATGTGGCATG
AGAGGAACGGAGAGGGGTGGTTAGACGGTGGTTACGTGTTTATGGGTGATTAGAGTGTGGTTTTT
AGGTGTGCTAGTTTTCTACGGTGACATTTTGGTGACGGATACGGGTGACCTCGTGTGTTATTGTT
TATGCCCGTTTGGGTAGTGTAATGAACGTTATCGGTAGGTTAATGTACGGCAAAGGGTGGAAGAG
GGGTGGAGAAACTGGAGAGAAAAGGAGGTGGTGAGAAAGTGGAGG
Right flanking sequence: Indices 96897 -- 97396
GAAAGAGTTTACGGGGTTCCCCGGGGGCTTAGGCGTCGTGATGGAAATATTAGCCGACACAAAGG
CGATGGTTGCTAAATGAGTGGCCATGGTGATTAGACGATGCTTGGCACACGTTGCTGAGTGACGT
TCAAACATCGTGATTTAAGCCAATGTTTCTTAGCATAGTACAAAATATTTGTTAAAAATTTGGAA
AGAATGTGGAAACGGACGGATTTAACCAACCACTCGTACCGGGTTCGAACCGAAGAAACCAGGTC
CATTGGCGTAGCACGTAACTAGCGTAGTCAAGCATTTGACAGAATCTACACATCTCGAGCGATTC
AAGCCTGGTGTACAAGAGGGGTTAAGATATCCCCGCGTTCATGGCTAGCGACAGTAATAGCCCCA
TGGGCAACGTGTGTCTAGAAGTCAACAAGCATAAACAGACTGTCAAGCTTGGCTGGCTTACCAGT
ATCCACCTGCCTCCAACCATATAGCCTACCACAACCACATCAAAA
Found at i:97642 original size:21 final size:21
Alignment explanation
Indices: 97616--97673 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
97606 TCTCCCATTC
**
97616 TACCACCCATGCCACCACTGA
1 TACCACCCATGCCACCACCAA
* *
97637 TACCACCCAAGCTACCACCAA
1 TACCACCCATGCCACCACCAA
* *
97658 AACCACCCATACCACC
1 TACCACCCATGCCACC
97674 TACTTTTCAT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.50, G:0.05, T:0.10
Consensus pattern (21 bp):
TACCACCCATGCCACCACCAA
Left flanking sequence: Indices 97116 -- 97615
ACCAACCACTCGTACCGGGTTCGAACCGAAGAAACCAGGTCCATTGGCGTAGCACGTAACTAGCG
TAGTCAAGCATTTGACAGAATCTACACATCTCGAGCGATTCAAGCCTGGTGTACAAGAGGGGTTA
AGATATCCCCGCGTTCATGGCTAGCGACAGTAATAGCCCCATGGGCAACGTGTGTCTAGAAGTCA
ACAAGCATAAACAGACTGTCAAGCTTGGCTGGCTTACCAGTATCCACCTGCCTCCAACCATATAG
CCTACCACAACCACATCAAAATACCATACTCTGACCACACCAATCCCTCCAACCAACAACCACAT
CAAACATAACGCACAACCCCCTCTCCAATTCACTACCCCAACCCCCAATGCATTAAATGATCAAC
AACGCCAACCACTACTTGTAAAAGCCAAAAACACCGACTACGAAACCAACCACTTAAGGCAACCT
CGAGGATATAAAACATTCAACAAGCATAATACCACTCTCCCATTC
Right flanking sequence: Indices 97674 -- 98173
TACTTTTCATACCACTCGTGCAAGCCACACACACTAGCCTACCCAAATGGGTGTAGATACTATTA
CAGCGTTAACAATACTAATCCCACCAACCATACTAGATCCCAACCAACACACTCAACTGTACATT
AACTACAACACAATGCAAACCACCCATATGGCTAACCATCCGTGCGTACGGCCCTAGTTCAACCA
CCCATACTACCCTACTAACCTCCACGCCAACCACCCTACTAACCTCCACGCCAACCACCCTACTA
ACCTCACCACGCCCCCACCTTACCACCCCACCACGCCCCCCTTACTGAATTTAAATTATAATACA
ATGCACCGCACTACTTTATAGAGATGTATTATTAGAGATGCTATAAAATGGGCTCATAAGATGTA
GTCGCCAGCCTAAAACTGGAAGTTCTGGTTCTGCTGTCCCTGCTGCAAGCCAAAGTTGTAGTGGG
AGTCGTACGCCGCCGGCGCCGTCATGTCGTCCTCGATCCCCTCGT
Found at i:97773 original size:18 final size:20
Alignment explanation
Indices: 97750--97786 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
97740 AGCGTTAACA
97750 ATACTA-ATCCC-ACCAACC
1 ATACTAGATCCCAACCAACC
97768 ATACTAGATCCCAACCAAC
1 ATACTAGATCCCAACCAAC
97787 ACACTCAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.41, C:0.41, G:0.03, T:0.16
Consensus pattern (20 bp):
ATACTAGATCCCAACCAACC
Left flanking sequence: Indices 97250 -- 97749
ATCCCCGCGTTCATGGCTAGCGACAGTAATAGCCCCATGGGCAACGTGTGTCTAGAAGTCAACAA
GCATAAACAGACTGTCAAGCTTGGCTGGCTTACCAGTATCCACCTGCCTCCAACCATATAGCCTA
CCACAACCACATCAAAATACCATACTCTGACCACACCAATCCCTCCAACCAACAACCACATCAAA
CATAACGCACAACCCCCTCTCCAATTCACTACCCCAACCCCCAATGCATTAAATGATCAACAACG
CCAACCACTACTTGTAAAAGCCAAAAACACCGACTACGAAACCAACCACTTAAGGCAACCTCGAG
GATATAAAACATTCAACAAGCATAATACCACTCTCCCATTCTACCACCCATGCCACCACTGATAC
CACCCAAGCTACCACCAAAACCACCCATACCACCTACTTTTCATACCACTCGTGCAAGCCACACA
CACTAGCCTACCCAAATGGGTGTAGATACTATTACAGCGTTAACA
Right flanking sequence: Indices 97787 -- 98286
ACACTCAACTGTACATTAACTACAACACAATGCAAACCACCCATATGGCTAACCATCCGTGCGTA
CGGCCCTAGTTCAACCACCCATACTACCCTACTAACCTCCACGCCAACCACCCTACTAACCTCCA
CGCCAACCACCCTACTAACCTCACCACGCCCCCACCTTACCACCCCACCACGCCCCCCTTACTGA
ATTTAAATTATAATACAATGCACCGCACTACTTTATAGAGATGTATTATTAGAGATGCTATAAAA
TGGGCTCATAAGATGTAGTCGCCAGCCTAAAACTGGAAGTTCTGGTTCTGCTGTCCCTGCTGCAA
GCCAAAGTTGTAGTGGGAGTCGTACGCCGCCGGCGCCGTCATGTCGTCCTCGATCCCCTCGTCCT
CCTCGCCAAAGTAGGTGTCGATGATGGCAAACGCCTTGTCGTAGATCTTGTCGTTGTCGTTCAGC
TGGCACGCAAAAATCTTCTCCATGCCCCCGGCCTCCTCGATCCAC
Found at i:97904 original size:24 final size:24
Alignment explanation
Indices: 97877--97938 Score: 124
Period size: 24 Copynumber: 2.6 Consensus size: 24
97867 CACCCATACT
97877 ACCCTACTAACCTCCACGCCAACC
1 ACCCTACTAACCTCCACGCCAACC
97901 ACCCTACTAACCTCCACGCCAACC
1 ACCCTACTAACCTCCACGCCAACC
97925 ACCCTACTAACCTC
1 ACCCTACTAACCTC
97939 ACCACGCCCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.29, C:0.53, G:0.03, T:0.15
Consensus pattern (24 bp):
ACCCTACTAACCTCCACGCCAACC
Left flanking sequence: Indices 97377 -- 97876
CTACCACAACCACATCAAAATACCATACTCTGACCACACCAATCCCTCCAACCAACAACCACATC
AAACATAACGCACAACCCCCTCTCCAATTCACTACCCCAACCCCCAATGCATTAAATGATCAACA
ACGCCAACCACTACTTGTAAAAGCCAAAAACACCGACTACGAAACCAACCACTTAAGGCAACCTC
GAGGATATAAAACATTCAACAAGCATAATACCACTCTCCCATTCTACCACCCATGCCACCACTGA
TACCACCCAAGCTACCACCAAAACCACCCATACCACCTACTTTTCATACCACTCGTGCAAGCCAC
ACACACTAGCCTACCCAAATGGGTGTAGATACTATTACAGCGTTAACAATACTAATCCCACCAAC
CATACTAGATCCCAACCAACACACTCAACTGTACATTAACTACAACACAATGCAAACCACCCATA
TGGCTAACCATCCGTGCGTACGGCCCTAGTTCAACCACCCATACT
Right flanking sequence: Indices 97939 -- 98438
ACCACGCCCCCACCTTACCACCCCACCACGCCCCCCTTACTGAATTTAAATTATAATACAATGCA
CCGCACTACTTTATAGAGATGTATTATTAGAGATGCTATAAAATGGGCTCATAAGATGTAGTCGC
CAGCCTAAAACTGGAAGTTCTGGTTCTGCTGTCCCTGCTGCAAGCCAAAGTTGTAGTGGGAGTCG
TACGCCGCCGGCGCCGTCATGTCGTCCTCGATCCCCTCGTCCTCCTCGCCAAAGTAGGTGTCGAT
GATGGCAAACGCCTTGTCGTAGATCTTGTCGTTGTCGTTCAGCTGGCACGCAAAAATCTTCTCCA
TGCCCCCGGCCTCCTCGATCCACATGGCGTTCTCGTTCACCTTCAACCCCTTGGCCTCCTTGGCC
ATCTCCCCCATCCGCAAGATGTTCTCGAGCGAGTCGAGCGTCACCTCGATGATCTTGGCGTCGGC
AATCGTCAACAAGTCGCACAACGGCTTGATGCACCCCTGCTGCAC
Done.