Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: MAG.C2.12_contig_112
Parameters: 2 5 7 80 10 50 2000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000
Length: 7780
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.21
Warning! 10 characters in sequence are not A, C, G, or T
Found at i:2392 original size:24 final size:24
Alignment explanation
Indices: 2364--2417 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
2354 TGCCCAGCAG
* *
2364 AAGGGGCCCGCCGAGGCTGTGGCG
1 AAGGGGCCCGCCGAGACTGTGGCA
* * * **
2388 CAGGGTCTCGTTGAGACTGTGGCA
1 AAGGGGCCCGCCGAGACTGTGGCA
2412 AAGGGG
1 AAGGGG
2418 TGCGAGAAGG
Statistics
Matches: 21, Mismatches: 9, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.17, C:0.22, G:0.46, T:0.15
Consensus pattern (24 bp):
AAGGGGCCCGCCGAGACTGTGGCA
Found at i:4269 original size:12 final size:12
Alignment explanation
Indices: 4252--4328 Score: 140
Period size: 12 Copynumber: 6.4 Consensus size: 12
4242 ACACCGACAT
4252 CAGCAGCACCGG
1 CAGCAGCACCGG
4264 CAGCAGCACCGG
1 CAGCAGCACCGG
4276 CAGCAGCACCGG
1 CAGCAGCACCGG
*
4288 CAGGAGCACCGG
1 CAGCAGCACCGG
*
4300 CAGGAGCACCGG
1 CAGCAGCACCGG
4312 CAGCAGCACCGG
1 CAGCAGCACCGG
4324 CAGCA
1 CAGCA
4329 ACGCCGAGTT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 63 1.00
ACGTcount: A:0.26, C:0.39, G:0.35, T:0.00
Consensus pattern (12 bp):
CAGCAGCACCGG
Done.