Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_113

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 7736
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.23


Found at i:4236 original size:21 final size:20

Alignment explanation


    Indices: 4198--4237  Score: 50
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       4188 GTTCCGAATT

                         *      
       4198 GATGCTTTGAACGGCATATA
          1 GATGCTTTGAACGACATATA

                *   *           
       4218 GATGTTTTTAATCGACATAT
          1 GATGCTTTGAA-CGACATAT

       4238 TTTCTCGCTT


Statistics
Matches: 16,  Mismatches: 3, Indels: 1
        0.80            0.15        0.05

Matches are distributed among these distances:
  20    9  0.56
  21    7  0.44

ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38


Consensus pattern (20 bp):   
GATGCTTTGAACGACATATA
Done.