Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_158

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 6139
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22


Found at i:2249 original size:18 final size:20

Alignment explanation


    Indices: 2201--2249  Score: 54
    Period size: 18  Copynumber: 2.5  Consensus size: 20

       2191 CAAGCCTACA

                             *   
       2201 ATCGTAAACAATGCCGAGACG
          1 ATCGTAAAC-ATGCCGACACG

                **              
       2222 ATCGCGAACATGCCG-CAC-
          1 ATCGTAAACATGCCGACACG

                      
       2240 ATCGTAAACA
          1 ATCGTAAACA

       2250 ACGGCGCTGA


Statistics
Matches: 23,  Mismatches: 5, Indels: 3
        0.74            0.16        0.10

Matches are distributed among these distances:
  18    8  0.35
  19    2  0.09
  20    6  0.26
  21    7  0.30

ACGTcount: A:0.37, C:0.29, G:0.20, T:0.14


Consensus pattern (20 bp):   
ATCGTAAACATGCCGACACG
Done.