Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_21

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 15999
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26


Found at i:2382 original size:17 final size:18

Alignment explanation


    Indices: 2351--2384  Score: 54
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       2341 TCGGAGACAA

                              
       2351 AGCCGTTGCAATGCAATT
          1 AGCCGTTGCAATGCAATT

                    *        
       2369 AGCCG-TGGAATGCAAT
          1 AGCCGTTGCAATGCAAT

       2385 AACCAGTTCT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17   10  0.67
  18    5  0.33

ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24


Consensus pattern (18 bp):   
AGCCGTTGCAATGCAATT

Found at i:4167 original size:20 final size:22

Alignment explanation


    Indices: 4142--4182  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       4132 GAGCCAAATT

                                  
       4142 GCCGAA-GAAACT-CCTGAGGC
          1 GCCGAATGAAACTGCCTGAGGC

                     *           
       4162 GCCGAATGATACTGCCTGAGG
          1 GCCGAATGAAACTGCCTGAGG

       4183 GATTCCGGTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    6  0.33
  21    5  0.28
  22    7  0.39

ACGTcount: A:0.27, C:0.27, G:0.32, T:0.15


Consensus pattern (22 bp):   
GCCGAATGAAACTGCCTGAGGC

Done.