Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_232

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 4679
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24


Found at i:1430 original size:26 final size:25

Alignment explanation


    Indices: 1379--1428  Score: 93
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1369 CCCAGCTCTT

                                     
       1379 TAAAAACACGACATTTCTGCTTGGG
          1 TAAAAACACGACATTTCTGCTTGGG

                  *                  
       1404 TAAAAATACGACATTTCTGCTTGGG
          1 TAAAAACACGACATTTCTGCTTGGG

       1429 GTTGACACAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Consensus pattern (25 bp):   
TAAAAACACGACATTTCTGCTTGGG
Done.