Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_295

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 3708
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.27


Found at i:371 original size:21 final size:21

Alignment explanation


    Indices: 345--404  Score: 99
    Period size: 21  Copynumber: 2.9  Consensus size: 21

        335 TGCTACGCAC

                                 
        345 AAGGAAAAGAAGAAGGCTAAG
          1 AAGGAAAAGAAGAAGGCTAAG

                                 
        366 AAGGAAAAGAAGAAGGCTAAG
          1 AAGGAAAAGAAGAAGGCTAAG

                  ***         
        387 AAGGAAGCCAAGAAGGCT
          1 AAGGAAAAGAAGAAGGCT

        405 CCTAAGACTG


Statistics
Matches: 36,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   36  1.00

ACGTcount: A:0.53, C:0.08, G:0.33, T:0.05


Consensus pattern (21 bp):   
AAGGAAAAGAAGAAGGCTAAG
Done.