Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_34

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 13567
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.25


Found at i:12021 original size:7 final size:7

Alignment explanation


    Indices: 12009--12040  Score: 50
    Period size: 7  Copynumber: 4.6  Consensus size: 7

      11999 ATCGAGTCCG

                   
      12009 GATACAA
          1 GATACAA

                   
      12016 GATACAA
          1 GATACAA

               *   
      12023 GATGCAA
          1 GATACAA

                  *
      12030 GATACAG
          1 GATACAA

                
      12037 GATA
          1 GATA

      12041 GAGAGGCTGT


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   7   22  1.00

ACGTcount: A:0.50, C:0.12, G:0.22, T:0.16


Consensus pattern (7 bp):   
GATACAA

Done.