Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_440

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1373

Length: 2289
ACGTcount: A:0.20, C:0.29, G:0.25, T:0.26


Found at i:599 original size:21 final size:22

Alignment explanation


    Indices: 570--610  Score: 61
    Period size: 21  Copynumber: 1.9  Consensus size: 22

        560 TGGACTCCAC

                                  
        570 CTCTCTCACCGATGC-GCTGAT
          1 CTCTCTCACCGATGCAGCTGAT

                *    *          
        591 CTCTTTCACTGATGCAGCTG
          1 CTCTCTCACCGATGCAGCTG

        611 TTTCCGTGGC


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   13  0.76
  22    4  0.24

ACGTcount: A:0.15, C:0.34, G:0.20, T:0.32


Consensus pattern (22 bp):   
CTCTCTCACCGATGCAGCTGAT
Done.