Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_69

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 10431
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.22


Found at i:8065 original size:18 final size:18

Alignment explanation


    Indices: 8042--8077  Score: 65
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       8032 TGGCCCCAGT

                        *     
       8042 TGCTCCGGCTCCTGCGCC
          1 TGCTCCGGCTCCAGCGCC

                              
       8060 TGCTCCGGCTCCAGCGCC
          1 TGCTCCGGCTCCAGCGCC

       8078 GGAACCTGCC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.03, C:0.50, G:0.28, T:0.19


Consensus pattern (18 bp):   
TGCTCCGGCTCCAGCGCC

Found at i:8085 original size:24 final size:24

Alignment explanation


    Indices: 8058--8104  Score: 59
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       8048 GGCTCCTGCG

                 *  *  *            
       8058 CCTGCTCCGGCTCCAGCGCCGGAA
          1 CCTGCCCCCGCCCCAGCGCCGGAA

                          *  *     
       8082 CCTGCCCCCGCCCCGGCTCCGGA
          1 CCTGCCCCCGCCCCAGCGCCGGA

       8105 GAAACCTGCG


Statistics
Matches: 18,  Mismatches: 5, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  24   18  1.00

ACGTcount: A:0.09, C:0.53, G:0.28, T:0.11


Consensus pattern (24 bp):   
CCTGCCCCCGCCCCAGCGCCGGAA
Done.