Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_76

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 9762
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26


Found at i:3058 original size:42 final size:41

Alignment explanation


    Indices: 2970--3060  Score: 106
    Period size: 42  Copynumber: 2.2  Consensus size: 41

       2960 ATGTCATCAC

                 *            *                      
       2970 CTTGAGGTTCTCAGCGACTTCCTGGACGTTCAGAACGGCGA
          1 CTTGATGTTCTCAGCGACCTCCTGGACGTTCAGAACGGCGA

                      *  * *                    *       
       3011 CCTTGATGTTTTCCGTGACCTCCTGGACGTTCAAGACCGTGCG-
          1 -CTTGATGTTCTCAGCGACCTCCTGGACGTTC-AGAACG-GCGA

                   
       3054 CTTGATG
          1 CTTGATG

       3061 GACTTGGACA


Statistics
Matches: 41,  Mismatches: 6, Indels: 4
        0.80            0.12        0.08

Matches are distributed among these distances:
  42   33  0.80
  43    5  0.12
  44    3  0.07

ACGTcount: A:0.16, C:0.27, G:0.27, T:0.29


Consensus pattern (41 bp):   
CTTGATGTTCTCAGCGACCTCCTGGACGTTCAGAACGGCGA
Done.