Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_16

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 17541
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25


Found at i:14281 original size:12 final size:12

Alignment explanation


    Indices: 14264--14289  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

      14254 AATAATGGCA

                        
      14264 GCCAAGAAGAAG
          1 GCCAAGAAGAAG

                        
      14276 GCCAAGAAGAAG
          1 GCCAAGAAGAAG

              
      14288 GC
          1 GC

      14290 GACCAAGAAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.46, C:0.19, G:0.35, T:0.00


Consensus pattern (12 bp):   
GCCAAGAAGAAG

Found at i:14309 original size:15 final size:15

Alignment explanation


    Indices: 14277--14316  Score: 59
    Period size: 15  Copynumber: 2.7  Consensus size: 15

      14267 AAGAAGAAGG

                      *  * 
      14277 CCAAGAAGAAGGCGA
          1 CCAAGAAGAAAGCCA

                           
      14292 CCAAGAAGAAAGCCA
          1 CCAAGAAGAAAGCCA

                *     
      14307 CCAAAAAGAA
          1 CCAAGAAGAA

      14317 GTAGTTTTTA


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   22  1.00

ACGTcount: A:0.55, C:0.23, G:0.23, T:0.00


Consensus pattern (15 bp):   
CCAAGAAGAAAGCCA
Done.