Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_272

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 4113
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25


Found at i:3472 original size:20 final size:20

Alignment explanation


    Indices: 3433--3472  Score: 52
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       3423 CAAAGCGCAC

                   *      *     
       3433 AAGCAATCTTTTCTTATCCG
          1 AAGCAATATTTTCTGATCCG

               *           *    
       3453 AAGTAATATTTTCTGCTCCG
          1 AAGCAATATTTTCTGATCCG

       3473 GCCGCACCTT


Statistics
Matches: 16,  Mismatches: 4, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  20   16  1.00

ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40


Consensus pattern (20 bp):   
AAGCAATATTTTCTGATCCG
Done.