Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_342

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1939

Length: 3232
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.26


Found at i:440 original size:12 final size:11

Alignment explanation


    Indices: 409--442  Score: 52
    Period size: 11  Copynumber: 3.1  Consensus size: 11

        399 TTGATAGATG

                       
        409 TGCTAATAGAA
          1 TGCTAATAGAA

                        
        420 TGC-AATAGAGA
          1 TGCTAATAGA-A

                       
        431 TGCTAATAGAA
          1 TGCTAATAGAA

             
        442 T
          1 T

        443 TTTTTATTCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  10    6  0.29
  11    9  0.43
  12    6  0.29

ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26


Consensus pattern (11 bp):   
TGCTAATAGAA
Done.