Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_384

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1698

Length: 2831
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27


Found at i:2114 original size:18 final size:18

Alignment explanation


    Indices: 2081--2116  Score: 51
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       2071 TCTTAGCGCA

                              
       2081 TCTTTATTCAAGGCAGCC
          1 TCTTTATTCAAGGCAGCC

                 *  *  *      
       2099 TCTTTTTTTAATGCAGCC
          1 TCTTTATTCAAGGCAGCC

       2117 CATTATTTTG


Statistics
Matches: 15,  Mismatches: 3, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.19, C:0.25, G:0.14, T:0.42


Consensus pattern (18 bp):   
TCTTTATTCAAGGCAGCC
Done.