Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_491

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1179

Length: 1965
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24


Found at i:1495 original size:12 final size:12

Alignment explanation


    Indices: 1471--1505  Score: 56
    Period size: 12  Copynumber: 2.9  Consensus size: 12

       1461 AGCCGAGTCG

                *   *   
       1471 AAACATCAAGCC
          1 AAACCTCAGGCC

                        
       1483 AAACCTCAGGCC
          1 AAACCTCAGGCC

                       
       1495 AAACCTCAGGC
          1 AAACCTCAGGC

       1506 TGGTCCTGAG


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.40, C:0.37, G:0.14, T:0.09


Consensus pattern (12 bp):   
AAACCTCAGGCC
Done.