Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_571

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 930

Length: 1551
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28


Found at i:245 original size:21 final size:21

Alignment explanation


    Indices: 221--293  Score: 125
    Period size: 21  Copynumber: 3.5  Consensus size: 21

        211 GTTGAGACGC

                                *
        221 TCGATGTTCTGTTTATACTGA
          1 TCGATGTTCTGTTTATACTGT

                                 
        242 TCGATGTTCTGTTTATACTGT
          1 TCGATGTTCTGTTTATACTGT

                  * *            
        263 TCGATGCTTTGTTTATACTGT
          1 TCGATGTTCTGTTTATACTGT

                      
        284 TCGATGTTCT
          1 TCGATGTTCT

        294 TGTTGAGGTT


Statistics
Matches: 47,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   47  1.00

ACGTcount: A:0.15, C:0.15, G:0.19, T:0.51


Consensus pattern (21 bp):   
TCGATGTTCTGTTTATACTGT

Done.