Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_77

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 9748
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22


Found at i:894 original size:171 final size:169

Alignment explanation


    Indices: 379--893  Score: 581
    Period size: 171  Copynumber: 3.0  Consensus size: 169

        369 ATCCGGGGTT

                                                                    **  *    
        379 TCCTGCACCTCATGCCATTTAGGAAGCCCCACGTCCGTGCATCCGGCGGACTGGGTTTCCGTATA
          1 TCCTGCACCTCATGCCATTTAGGAAGCCCCACGTCCGTGCATCCGGCGGACTGGGTCCCCATATA

               * *   *  *        *       * * * * *        *                  
        444 CAGTATGCACGGTCCCTATGTGAAA----ACTAACAGTACCAGCGCCTGTGCTAACCAGTATTGC
         66 CAGCACGCATGGCCCCTATGTCAAACGGCCCCACCGGAACCAGCGCATGTGCTAACCAGTATTGC

              *    **   *                   *  *   
        505 CATGGGCTCTCATTGACCGGCGTTCCCGACAGCGGCCCC
        131 CACGGGCCATCACTGACCGGCGTTCCCGACAGTGGACCC

              *        *      *    **   *   *    **        *                 
        544 TCTTGCACCTCGTGCCATATAGGTGGCCTCACTTCCGGTCATCCGGCAGACTGGGTCCCCATATA
          1 TCCTGCACCTCATGCCATTTAGGAAGCCCCACGTCCGTGCATCCGGCGGACTGGGTCCCCATATA

            *              *     *                    *           *      **  
        609 TAGCACGCATGGCCCATATGTTAACACGAGCCCCACCGGAACTAGCGCATGTGCGAACCAGGCTT
         66 CAGCACGCATGGCCCCTATGTCAA-ACG-GCCCCACCGGAACCAGCGCATGTGCTAACCAGTATT

                   **  * *             ** *          
        674 GCCACGGAACAACTCTGACCGGCGTTCTTGGCAGTGGACCC
        129 GCCACGGGCCATCACTGACCGGCGTTCCCGACAGTGGACCC

                    * *            *     *                  *             *  
        715 TCCTGCACGTTATGCCATTTAGGGAGCCCGACGTCCGTGCATCCGGCGAACTGGGTCCCCATCTA
          1 TCCTGCACCTCATGCCATTTAGGAAGCCCCACGTCCGTGCATCCGGCGGACTGGGTCCCCATATA

                                                   *                         
        780 CAGCACGCATGGCCCCTATGTCAATACGGCCCCGACCGGGACCAGCGCATGTGCTAACCAGTATT
         66 CAGCACGCATGGCCCCTATGTCAA-ACGGCCCC-ACCGGAACCAGCGCATGTGCTAACCAGTATT

                      *  *        *                 *
        845 GCCACGGGCCTTCGCTGACCGGAGTTCCCGACAGTGGACCA
        129 GCCACGGGCCATCACTGACCGGCGTTCCCGACAGTGGACCC

                    
        886 TCCTGCAC
          1 TCCTGCAC

        894 GAGCTGCCAC


Statistics
Matches: 266,  Mismatches: 77, Indels: 8
        0.76            0.22        0.02

Matches are distributed among these distances:
 165   69  0.26
 166    1  0.00
 170    5  0.02
 171  191  0.72

ACGTcount: A:0.20, C:0.34, G:0.25, T:0.21


Consensus pattern (169 bp):   
TCCTGCACCTCATGCCATTTAGGAAGCCCCACGTCCGTGCATCCGGCGGACTGGGTCCCCATATA
CAGCACGCATGGCCCCTATGTCAAACGGCCCCACCGGAACCAGCGCATGTGCTAACCAGTATTGC
CACGGGCCATCACTGACCGGCGTTCCCGACAGTGGACCC
Done.