Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_9

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 18904
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.22


Found at i:7922 original size:21 final size:21

Alignment explanation


    Indices: 7889--7933  Score: 69
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       7879 TCTCTAAATG

                    *            
       7889 CTTCTAAGTTAGAATCATAGT
          1 CTTCTAAGATAGAATCATAGT

               *               * 
       7910 CTTTTAAGATAGAATCATATT
          1 CTTCTAAGATAGAATCATAGT

               
       7931 CTT
          1 CTT

       7934 GCGCTCTCTG


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.33, C:0.13, G:0.11, T:0.42


Consensus pattern (21 bp):   
CTTCTAAGATAGAATCATAGT
Done.