Specifications ============== Sequence source file: "/media/bayegy/disk7/zhenghw_customer_data_analysis/tnr_test/test_cloud_20220923/13MISA/unigeneSeq.fa" Definement of microsatellites (unit size / minimum number of repeats): (1/10) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 16597 Total size of examined sequences (bp): 14990914 Total number of identified SSRs: 2111 Number of SSR containing sequences: 1767 Number of sequences containing more than 1 SSR: 283 Number of SSRs present in compound formation: 139 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 1030 2 527 3 510 4 29 5 4 6 11 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 total A - - - - - 145 68 61 35 23 36 20 17 7 19 17 4 7 6 2 5 2 1 1 1 1 1 3 1 1 484 C - - - - - 1 2 1 1 5 G - - - - - 3 2 1 6 T - - - - - 138 113 66 39 30 36 25 31 10 5 11 7 8 7 1 1 2 2 1 1 1 535 AC - 10 5 2 2 2 2 1 1 25 AG - 28 11 12 8 1 4 2 1 1 2 70 AT - 8 11 14 5 8 14 5 65 CA - 11 2 1 1 15 CG - 1 1 CT - 25 19 2 7 15 4 8 1 3 3 1 88 GA - 12 13 10 2 1 2 1 1 3 45 GT - 13 2 1 1 17 TA - 22 17 7 3 9 15 12 85 TC - 41 8 10 5 4 9 6 5 2 2 1 1 94 TG - 4 7 2 3 4 1 1 22 AAG 16 2 2 20 AAT 13 5 11 4 1 1 1 36 ACA 2 1 3 6 ACC 9 2 1 2 14 ACG 1 1 AGA 9 1 10 AGC 4 2 6 AGG 1 1 AGT 2 1 3 ATA 4 2 1 7 ATC 6 2 2 10 ATG 4 3 7 ATT 4 5 2 1 1 13 CAA 5 1 2 4 2 14 CAC 8 2 3 1 14 CAG 4 1 1 6 CAT 2 2 1 5 CCA 6 5 2 1 14 CCG 5 3 8 CCT 5 5 CGC 1 1 1 3 CGG 1 1 2 CTA 1 1 CTC 5 1 2 1 9 CTG 2 3 5 CTT 9 1 1 11 GAA 15 7 1 23 GAC 2 1 3 GAG 5 4 2 11 GAT 13 3 5 21 GCA 6 6 12 GCG 1 2 3 GCT 4 1 1 2 8 GGA 3 1 1 5 GGC 3 1 4 GGT 10 4 5 19 GTG 10 2 1 13 GTT 2 3 1 6 TAA 6 1 7 TAG 1 1 TAT 17 1 2 1 2 3 26 TCA 10 2 2 1 15 TCC 1 2 3 TCG 1 1 2 TCT 8 4 12 TGA 9 5 14 TGC 5 2 1 8 TGG 5 4 4 1 14 TGT 3 3 TTA 3 9 7 1 1 4 2 27 TTC 9 3 1 1 14 TTG 2 3 5 AAAT 6 6 AATA 3 3 ATAA 2 2 ATTA 2 2 CAAA 2 2 GAAA 1 1 TAAA 5 5 TGTT 1 1 TTAT 3 3 TTTA 3 3 TTTG 1 1 GTGTG 1 1 TTATT 1 1 TTGTG 1 1 TTTCT 1 1 CCAACA 1 1 CCACCT 1 1 CCGCCA 1 1 CCTGCC 2 2 TCAGCC 5 5 TTATAT 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 total A/T - - - - - 283 181 127 74 53 72 45 48 17 24 28 11 15 13 3 5 3 2 1 3 1 1 1 2 1 3 1 1 1019 C/G - - - - - 4 4 2 1 11 AC/GT - 38 16 6 5 4 2 2 1 2 1 1 1 79 AG/CT - 106 51 34 20 21 15 20 7 5 5 6 2 1 1 3 297 AT/AT - 30 28 21 8 17 29 17 150 CG/CG - 1 1 AAC/GTT 10 6 11 4 1 2 34 AAG/CTT 66 18 4 1 1 90 AAT/ATT 47 23 22 5 1 1 2 1 1 2 4 4 2 1 116 ACC/GGT 48 19 15 2 2 2 88 ACG/CGT 4 1 1 6 ACT/AGT 3 2 5 AGC/CTG 25 15 3 2 45 AGG/CCT 19 9 4 1 1 34 ATC/ATG 44 14 7 7 72 CCG/CGG 10 7 1 2 20 AAAC/GTTT 3 1 4 AAAG/CTTT 1 1 AAAT/ATTT 17 5 22 AATT/AATT 2 2 AAAAG/CTTTT 1 1 AAAAT/ATTTT 1 1 AACAC/GTGTT 1 1 ACACC/GGTGT 1 1 AAATAT/ATATTT 1 1 AACACC/GGTGTT 1 1 ACCGCC/CGGTGG 1 1 ACCTCC/AGGTGG 1 1 AGCCTC/AGGCTG 5 5 AGGGGC/CCCCTG 2 2